Clone RE28575 Report

Search the DGRC for RE28575

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:285
Well:75
Vector:pFlc-1
Associated Gene/TranscriptCG6763-RA
Protein status:RE28575.pep: gold
Preliminary Size:2593
Sequenced Size:1990

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6759 2002-01-01 Sim4 clustering to Release 2
CG6763 2003-07-07 Blastp of sequenced clone
CG6763 2008-04-29 Release 5.5 accounting
CG6763 2008-08-15 Release 5.9 accounting
CG6763 2008-12-18 5.12 accounting

Clone Sequence Records

RE28575.complete Sequence

1990 bp (1990 high quality bases) assembled on 2003-07-07

GenBank Submission: AY075469

> RE28575.complete
ATCATAATTGTACGGCCAGCCAAGAGTGGTCCTCTAGCCACGTTCTCTCA
TTCATTTTGTAACTTGAATACCATTTTATAATAATTAAAGTAAGCTTAGC
ATATGCAAGAAGAACTAAAGTTGTAATCACAAGAGTTTGCTTCCTCTAAT
AAGCACGTACCGCAAAGTTACAATCAAAACATGAACTTTTTCAATGCCAT
TTGGTAAGATTTCTTTGGAGTGGAAACAAAGTTCCGTAGATACAAATTAT
ACAAGTGTTTCGCGTGTCTTTCCACTCCAAATAGCCGGCAAATTATTCCG
GAATATCTTCCAACAGCAGGCGGTATAAATCCATAAAGGCAAGAGGTCGC
CGCGATAGTGCTTATCGGTTATCGCTTTGGGGGCGACAAATTACGTATAA
AGTCGTTAAACTTTGGATATGCAAACAAACTACTGATACACTTTATGGCA
ATAGCGAAGCAGACAGACACAGTCCCATATGTATAGCCGCTTAACGAGAG
TGCTGGCCAAATATTTACCAGGCCATAAAGCGTGTGACAAACCAAGAAGC
CAGCGATGACGATTGCAGCTCCGTTGAAGGTTTCCTCGTGGAAAACATGT
TTATGCATATGAAAGCCACCGCCACCGGCAAAGTTTGATAAGCGTTGGCG
GCGGCGATTATGCTGGAAAATATATAAATCCCGACCGGGTCAGAACTCAG
CACAGTTTCATTCTAGCCATTCAACAAAGAGGCAATCCAATCACCCAAAC
AAAAGCAATTACGATTATAACAATGAGCCTGAAAGTTTTTCTAGTCCTAG
CTTTGGCTCTATCGTCCTGCCAAGCGCTTCCCTATGTATCCTATGATGAT
GTTGACGATACGGAGGTCATCGAGCTGCCTGGAAATGGAATCGAGGAGAT
ACCACCCACTCTTGGCAAGGATATCATCGACCTGACACCATTGGGAACGG
CGCTCTTTGGCAAACCGGATGAGGAGCTAACGGCGAATCGTGTGGGTAAC
TTTAGTGCGGATGCAGATGAGATGAATCCTGAGGAACTGGGCAGCTATCT
GGAGGGTGATATGCTGGTGCCGCAAACGGATCTGATTATGAAAAATGGAC
TGCCCACTCAGTCCTCCCGTTGGCCAAATGGTGTGGTGCCATATGAAATC
CGAGGAAACTTCAATGCCAGAGATATGGCCACAATTGAAAATGCCATTGG
TGAGTACCATCGTCGGACGTGCATTCGGTTTGTGAAGCGCAGCTCTGAGC
GGGACTACATCTCCATTCGCGGCGACAACTCCGGCTGTTGGTCCTCCGTT
GGTCGAGTGGGTGGCAAGCAGGAGGTGAACCTACAGTCTCCCGGCTGTCT
CAGCCGTCCAGGAACCGCCATGCACGAGCTGATGCACGCCCTCGGCTTCC
TTCATGAACAGAACCGTATGGAGCGCGATGGTTATGTGGCCATCCAGTAC
AACAATGTCCAGTCCTCGGCGATGAACAACTTCGAAAAGGCCGCCCGCAC
GGAAGCCTTTGGGGTGCCCTACGACTATGGCAGCGTGATGCACTACTCCA
AGAACGCCTTCTCCATCAACGGACAGCCCACCATACTGGCCATGCAAGCC
AATGGCGCCGATAAAATGGGCCAGAGGAATGGTTTCTCCGACTACGATAT
CCAGAAGCTGAATCGTATGTACGATTGTGGCACCGTCAACGCTGTTCCAG
TTGCCCCAGGATTACCCGCCCCTGCTCCTGCTCCTGGCGCCCCTGCTGGC
AGTGGCAATCCGATTGTAGATAGCTTCATCGGCGGCCTGATCAGCGGATT
GGGATTGGGCGATGAAAAGAAGGAGACCAGTTCATAGACAGAATCTACTA
GCTCGTACCATCCACCAACGCTCGAAAGTATTTAACGCATTCCACATACA
AAAAATCTAGCACCATTACTTAAACATGTAGCTAATATGTTTAGTTGATA
ATTATTAAAATTTAGCATGAATCGAAAAAAAAAAAAAAAA

RE28575.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-RA 2325 CG6763-RA 293..2272 1..1980 9870 99.8 Plus
CG6763.a 2266 CG6763.a 293..2264 1..1972 9860 100 Plus
cdc16-RA 2618 cdc16-RA 2497..2618 1..122 610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19107414..19109007 1..1594 7970 100 Plus
chr3R 27901430 chr3R 19109073..19109451 1594..1972 1895 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23284002..23285595 1..1594 7970 100 Plus
3R 32079331 3R 23285661..23286047 1594..1980 1905 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23024833..23026426 1..1594 7970 100 Plus
3R 31820162 3R 23026492..23026878 1594..1980 1905 99.4 Plus
Blast to na_te.dros performed on 2019-03-16 04:55:22 has no hits.

RE28575.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:56:06 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19107414..19109007 1..1594 100 -> Plus
chr3R 19109074..19109453 1595..1974 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:17 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1065 773..1837 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:51 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1065 773..1837 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:11 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1065 773..1837 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:34 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1065 773..1837 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:54 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1065 773..1837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:33:17 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1970 1..1970 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:51 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1974 1..1974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:11 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1974 1..1974 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:34 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1970 1..1970 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:54 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1974 1..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:06 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23284002..23285595 1..1594 100 -> Plus
3R 23285662..23286041 1595..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:06 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23284002..23285595 1..1594 100 -> Plus
3R 23285662..23286041 1595..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:06 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23284002..23285595 1..1594 100 -> Plus
3R 23285662..23286041 1595..1974 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:11 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19109724..19111317 1..1594 100 -> Plus
arm_3R 19111384..19111763 1595..1974 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:44 Download gff for RE28575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23024833..23026426 1..1594 100 -> Plus
3R 23026493..23026872 1595..1974 99   Plus

RE28575.pep Sequence

Translation from 772 to 1836

> RE28575.pep
MSLKVFLVLALALSSCQALPYVSYDDVDDTEVIELPGNGIEEIPPTLGKD
IIDLTPLGTALFGKPDEELTANRVGNFSADADEMNPEELGSYLEGDMLVP
QTDLIMKNGLPTQSSRWPNGVVPYEIRGNFNARDMATIENAIGEYHRRTC
IRFVKRSSERDYISIRGDNSGCWSSVGRVGGKQEVNLQSPGCLSRPGTAM
HELMHALGFLHEQNRMERDGYVAIQYNNVQSSAMNNFEKAARTEAFGVPY
DYGSVMHYSKNAFSINGQPTILAMQANGADKMGQRNGFSDYDIQKLNRMY
DCGTVNAVPVAPGLPAPAPAPGAPAGSGNPIVDSFIGGLISGLGLGDEKK
ETSS*

RE28575.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16990-PA 353 GF16990-PA 1..336 1..335 1458 84.3 Plus
Dana\GF20726-PA 295 GF20726-PA 33..293 49..302 731 53.8 Plus
Dana\GF22400-PA 360 GF22400-PA 90..330 68..304 470 42.3 Plus
Dana\GF13868-PA 255 GF13868-PA 24..251 77..302 421 40.3 Plus
Dana\GF13899-PA 260 GF13899-PA 28..256 85..302 410 37.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11198-PA 354 GG11198-PA 1..354 1..354 1675 94.6 Plus
Dere\GG12357-PA 295 GG12357-PA 33..293 49..302 739 54.2 Plus
Dere\GG18102-PA 318 GG18102-PA 63..290 76..302 475 43.8 Plus
Dere\GG24205-PA 261 GG24205-PA 28..257 85..302 415 38.6 Plus
Dere\GG25167-PA 254 GG25167-PA 23..250 77..302 413 39.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18520-PA 348 GH18520-PA 3..348 4..354 1287 70.7 Plus
Dgri\GH18521-PA 310 GH18521-PA 4..290 5..302 861 53.7 Plus
Dgri\GH18801-PA 290 GH18801-PA 29..288 50..302 759 56.1 Plus
Dgri\GH12202-PA 314 GH12202-PA 37..283 44..302 467 40 Plus
Dgri\GH13112-PA 262 GH13112-PA 30..258 85..302 400 37.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-PB 354 CG6763-PB 1..354 1..354 1859 100 Plus
CG6763-PA 354 CG6763-PA 1..354 1..354 1859 100 Plus
CG5715-PA 295 CG5715-PA 33..293 49..302 722 54.2 Plus
CG6696-PA 324 CG6696-PA 66..290 76..301 459 43.9 Plus
CG7631-PA 254 CG7631-PA 23..250 77..302 408 40.3 Plus
CG15255-PB 261 CG15255-PB 28..257 85..302 404 38.2 Plus
CG15255-PA 261 CG15255-PA 28..257 85..302 404 38.2 Plus
CG15254-PB 254 CG15254-PB 28..250 83..302 380 38.3 Plus
CG15254-PA 254 CG15254-PA 28..250 83..302 380 38.3 Plus
CG15253-PA 253 CG15253-PA 26..251 83..305 375 37 Plus
CG10280-PA 356 CG10280-PA 107..338 85..302 346 35.5 Plus
CG10280-PB 362 CG10280-PB 113..344 85..302 346 35.5 Plus
CG11865-PA 240 CG11865-PA 56..239 117..300 343 41 Plus
CG6974-PA 251 CG6974-PA 41..251 101..302 316 34.9 Plus
Semp1-PA 251 CG11864-PA 23..247 85..302 313 37.4 Plus
tok-PC 1464 CG6863-PC 529..720 117..302 292 35.8 Plus
tok-PA 1464 CG6863-PA 529..720 117..302 292 35.8 Plus
tok-PB 1464 CG6863-PB 529..720 117..302 292 35.8 Plus
tld-PA 1067 CG6868-PA 127..339 108..304 251 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24365-PA 353 GI24365-PA 3..349 4..354 1330 71.4 Plus
Dmoj\GI24368-PA 344 GI24368-PA 18..334 35..345 929 56.9 Plus
Dmoj\GI24367-PA 313 GI24367-PA 28..294 51..319 812 55 Plus
Dmoj\GI22691-PA 285 GI22691-PA 30..283 52..302 729 55.7 Plus
Dmoj\GI22038-PA 437 GI22038-PA 37..258 50..273 664 55.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24497-PA 362 GL24497-PA 3..339 4..335 1442 83.4 Plus
Dper\GL21995-PA 296 GL21995-PA 34..294 49..302 750 54.6 Plus
Dper\GL27016-PA 322 GL27016-PA 68..295 76..302 475 43.3 Plus
Dper\GL26434-PA 250 GL26434-PA 25..246 83..302 429 41.4 Plus
Dper\GL26435-PA 260 GL26435-PA 16..256 59..302 426 39 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19845-PA 358 GA19845-PA 3..335 4..335 1463 82.6 Plus
Dpse\GA19079-PA 290 GA19079-PA 28..288 49..302 751 54.6 Plus
Dpse\GA19789-PA 322 GA19789-PA 68..295 76..302 475 43.3 Plus
Dpse\GA20493-PA 250 GA20493-PA 25..246 83..302 426 41 Plus
Dpse\GA13605-PA 262 GA13605-PA 30..258 85..302 402 39.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26498-PA 354 GM26498-PA 1..354 1..354 1863 97.7 Plus
Dsec\GM23496-PA 295 GM23496-PA 33..293 49..302 743 54.6 Plus
Dsec\GM22792-PA 324 GM22792-PA 66..293 76..302 475 43.8 Plus
Dsec\GM14306-PA 261 GM14306-PA 28..257 85..302 422 39.5 Plus
Dsec\GM16106-PA 254 GM16106-PA 23..250 77..302 410 39.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21011-PA 358 GD21011-PA 1..358 1..354 1839 96.1 Plus
Dsim\GD18303-PA 295 GD18303-PA 33..293 49..302 738 54.6 Plus
Dsim\GD21951-PA 261 GD21951-PA 28..257 85..302 422 39.5 Plus
Dsim\GD24016-PA 254 GD24016-PA 23..250 77..302 414 39.5 Plus
Dsim\GD21948-PA 253 GD21948-PA 26..251 83..305 383 37.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24374-PA 361 GJ24374-PA 3..357 4..354 1342 72.3 Plus
Dvir\GJ24375-PA 352 GJ24375-PA 6..351 5..350 1061 59.1 Plus
Dvir\GJ23419-PA 294 GJ23419-PA 33..292 50..302 740 54.2 Plus
Dvir\GJ18593-PA 314 GJ18593-PA 37..283 44..302 464 40.4 Plus
Dvir\GJ23077-PA 255 GJ23077-PA 31..251 84..302 442 41.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11522-PA 362 GK11522-PA 16..339 17..335 1328 79.4 Plus
Dwil\GK22330-PA 270 GK22330-PA 9..268 50..302 750 55.2 Plus
Dwil\GK24951-PA 316 GK24951-PA 58..285 76..302 475 44.2 Plus
Dwil\GK18907-PA 264 GK18907-PA 29..260 84..302 424 39.6 Plus
Dwil\GK18143-PA 259 GK18143-PA 31..255 83..302 394 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10365-PA 352 GE10365-PA 1..352 1..354 1595 93.8 Plus
Dyak\GE10811-PA 295 GE10811-PA 33..293 49..302 735 53.8 Plus
Dyak\GE15503-PA 324 GE15503-PA 66..293 76..302 479 44.2 Plus
Dyak\GE19399-PA 261 GE19399-PA 28..257 85..302 412 39.1 Plus
Dyak\GE21078-PA 254 GE21078-PA 11..250 54..302 403 37.5 Plus

RE28575.hyp Sequence

Translation from 772 to 1836

> RE28575.hyp
MSLKVFLVLALALSSCQALPYVSYDDVDDTEVIELPGNGIEEIPPTLGKD
IIDLTPLGTALFGKPDEELTANRVGNFSADADEMNPEELGSYLEGDMLVP
QTDLIMKNGLPTQSSRWPNGVVPYEIRGNFNARDMATIENAIGEYHRRTC
IRFVKRSSERDYISIRGDNSGCWSSVGRVGGKQEVNLQSPGCLSRPGTAM
HELMHALGFLHEQNRMERDGYVAIQYNNVQSSAMNNFEKAARTEAFGVPY
DYGSVMHYSKNAFSINGQPTILAMQANGADKMGQRNGFSDYDIQKLNRMY
DCGTVNAVPVAPGLPAPAPAPGAPAGSGNPIVDSFIGGLISGLGLGDEKK
ETSS*

RE28575.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-PB 354 CG6763-PB 1..354 1..354 1859 100 Plus
CG6763-PA 354 CG6763-PA 1..354 1..354 1859 100 Plus
CG5715-PA 295 CG5715-PA 33..293 49..302 722 54.2 Plus
CG6696-PA 324 CG6696-PA 66..290 76..301 459 43.9 Plus
CG7631-PA 254 CG7631-PA 23..250 77..302 408 40.3 Plus