BDGP Sequence Production Resources |
Search the DGRC for RE28596
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 285 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | HmgZ-RA |
Protein status: | RE28596.pep: gold |
Preliminary Size: | 1140 |
Sequenced Size: | 710 |
Gene | Date | Evidence |
---|---|---|
CG17921 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17921 | 2002-04-26 | Blastp of sequenced clone |
CG17921 | 2003-01-01 | Sim4 clustering to Release 3 |
HmgZ | 2008-04-29 | Release 5.5 accounting |
HmgZ | 2008-08-15 | Release 5.9 accounting |
HmgZ | 2008-12-18 | 5.12 accounting |
710 bp (710 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113439
> RE28596.complete ATCTTGCAAAGGCAAAAGCTGTACTACGTACGCTCAAGCGACTGACTTGG GCATTCAGTGCAAAGAAAATTTTATACAGTGAACAGAGCAGCAACTGAAC CAAAATCGAGCAGATTTTACCGATTTGCTGCAATTAAAACGCAAATTACG CGACTTTTTCGTACGGCTGCTTAAGTGCTCAGCCTTTATATATATTCCTC GAGAGAAGTTAAATTAAACCAGAATAATGAGTGGAGATCGCCCGAAGCGT CCCCTTTCCGCCTACATGCTGTGGCTCAACGAGACCCGCGAACAGATCAA GAAGGATAATCCCGGCAGCAAGGTGACAGACATCGCCAAGCGGGGCGGAG AACTCTGGCGCGGACTGAAGGATAAGACCGAGTGGGAGCAGAAGGCCATC AAAATGAAGGAGGAGTACAACAAGGCGGTAAAGGAGTACGAGGCCAATGG CGGCACCGATTCGGGAGCGCCCAAGAAGCGAAAGAAGGCGGCCGCCAAGC CAGCCAAGAAGGCCAAGAAGAAAGAGTCCTCCGAGGAGGAGGAGGAGGAC GAGAGCGAGTAGACACGGTTGCATCCATCGCAATGGGCAACGTTTTTCTG CATAAGTTTTAAAATACATTTTATTAATGTAATTTTTTAAGTGACAAAAA AAACCCACAAAATGAAAACCAAGAAAAAAACCTAATTAAAAACCAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17584479..17584794 | 694..380 | 1485 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 17584877..17585091 | 380..166 | 1075 | 100 | Minus |
chr2R | 21145070 | chr2R | 17590786..17590948 | 166..4 | 800 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 17601986..17602105 | 257..376 | 195 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21697979..21698304 | 705..380 | 1630 | 100 | Minus |
2R | 25286936 | 2R | 21698387..21698601 | 380..166 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 21704323..21704485 | 166..4 | 815 | 100 | Minus |
2R | 25286936 | 2R | 21715495..21715614 | 257..376 | 195 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21699178..21699503 | 705..380 | 1630 | 100 | Minus |
2R | 25260384 | 2R | 21699586..21699800 | 380..166 | 1075 | 100 | Minus |
2R | 25260384 | 2R | 21705522..21705684 | 166..4 | 815 | 100 | Minus |
2R | 25260384 | 2R | 21716694..21716813 | 257..376 | 195 | 77.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17584529..17584794 | 380..645 | 98 | <- | Minus |
chr2R | 17584878..17585090 | 167..379 | 100 | <- | Minus |
chr2R | 17590786..17590951 | 1..166 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RA | 1..336 | 227..562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RA | 1..336 | 227..562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RB | 1..336 | 227..562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RA | 1..336 | 227..562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RA | 1..336 | 227..562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RB | 1..694 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RB | 1..694 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RB | 14..707 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RB | 1..694 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HmgZ-RB | 14..707 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21697990..21698304 | 380..694 | 100 | <- | Minus |
2R | 21698388..21698600 | 167..379 | 100 | <- | Minus |
2R | 21704323..21704488 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21697990..21698304 | 380..694 | 100 | <- | Minus |
2R | 21698388..21698600 | 167..379 | 100 | <- | Minus |
2R | 21704323..21704488 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21697990..21698304 | 380..694 | 100 | <- | Minus |
2R | 21698388..21698600 | 167..379 | 100 | <- | Minus |
2R | 21704323..21704488 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17585495..17585809 | 380..694 | 100 | <- | Minus |
arm_2R | 17585893..17586105 | 167..379 | 100 | <- | Minus |
arm_2R | 17591828..17591993 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21699189..21699503 | 380..694 | 100 | <- | Minus |
2R | 21699587..21699799 | 167..379 | 100 | <- | Minus |
2R | 21705522..21705687 | 1..166 | 99 | Minus |
Translation from 226 to 561
> RE28596.pep MSGDRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDK TEWEQKAIKMKEEYNKAVKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKE SSEEEEEDESE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11622-PA | 111 | GF11622-PA | 1..80 | 1..80 | 401 | 95 | Plus |
Dana\GF13265-PA | 111 | GF13265-PA | 2..71 | 3..72 | 268 | 67.1 | Plus |
Dana\GF12460-PA | 728 | GF12460-PA | 553..649 | 4..96 | 244 | 51.5 | Plus |
Dana\GF18856-PA | 209 | GF18856-PA | 8..110 | 6..103 | 140 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20749-PA | 111 | GG20749-PA | 1..111 | 1..111 | 550 | 100 | Plus |
Dere\GG22136-PA | 111 | GG22136-PA | 3..78 | 4..79 | 301 | 69.7 | Plus |
Dere\GG19998-PA | 724 | GG19998-PA | 552..628 | 5..79 | 235 | 57.1 | Plus |
Dere\GG11142-PA | 138 | GG11142-PA | 3..78 | 1..73 | 165 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20784-PA | 111 | GH20784-PA | 1..80 | 1..80 | 398 | 95 | Plus |
Dgri\GH21124-PA | 111 | GH21124-PA | 3..78 | 4..79 | 300 | 69.7 | Plus |
Dgri\GH21151-PA | 744 | GH21151-PA | 558..668 | 4..98 | 236 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HmgZ-PD | 111 | CG17921-PD | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PC | 111 | CG17921-PC | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PA | 111 | CG17921-PA | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PB | 111 | CG17921-PB | 1..111 | 1..111 | 579 | 100 | Plus |
HmgD-PD | 112 | CG17950-PD | 3..112 | 4..111 | 382 | 64.9 | Plus |
HmgD-PC | 112 | CG17950-PC | 3..112 | 4..111 | 382 | 64.9 | Plus |
HmgD-PB | 112 | CG17950-PB | 3..112 | 4..111 | 382 | 64.9 | Plus |
HmgD-PA | 112 | CG17950-PA | 3..112 | 4..111 | 382 | 64.9 | Plus |
Ssrp-PA | 723 | CG4817-PA | 554..661 | 5..107 | 269 | 46.3 | Plus |
tHMG1-PA | 126 | CG7045-PA | 5..76 | 3..71 | 163 | 40.3 | Plus |
tHMG2-PA | 133 | CG7046-PA | 5..78 | 3..73 | 162 | 39.2 | Plus |
tHMG2-PB | 134 | CG7046-PB | 6..79 | 3..73 | 162 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20867-PA | 111 | GI20867-PA | 1..80 | 1..80 | 400 | 95 | Plus |
Dmoj\GI18728-PA | 112 | GI18728-PA | 2..71 | 3..72 | 269 | 68.6 | Plus |
Dmoj\GI18750-PA | 734 | GI18750-PA | 559..660 | 4..96 | 254 | 51.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17523-PA | 113 | GL17523-PA | 4..87 | 2..85 | 421 | 95.2 | Plus |
Dper\GL16947-PA | 111 | GL16947-PA | 2..71 | 3..72 | 265 | 67.1 | Plus |
Dper\GL11071-PA | 727 | GL11071-PA | 556..653 | 6..96 | 223 | 50 | Plus |
Dper\GL23184-PA | 82 | GL23184-PA | 4..75 | 5..73 | 138 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14726-PA | 113 | GA14726-PA | 4..87 | 2..85 | 421 | 95.2 | Plus |
Dpse\GA30453-PC | 111 | GA30453-PC | 2..71 | 3..72 | 265 | 67.1 | Plus |
Dpse\GA30453-PB | 111 | GA30453-PB | 2..71 | 3..72 | 265 | 67.1 | Plus |
Dpse\GA30453-PA | 111 | GA30453-PA | 2..71 | 3..72 | 265 | 67.1 | Plus |
Dpse\GA18454-PA | 727 | GA18454-PA | 556..653 | 6..96 | 223 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15692-PA | 111 | GM15692-PA | 1..111 | 1..111 | 550 | 100 | Plus |
Dsec\GM15859-PA | 112 | GM15859-PA | 2..71 | 3..72 | 274 | 70 | Plus |
Dsec\GM13209-PA | 111 | GM13209-PA | 4..71 | 5..72 | 250 | 67.6 | Plus |
Dsec\GM26441-PA | 137 | GM26441-PA | 4..69 | 2..64 | 145 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25171-PA | 111 | GD25171-PA | 1..111 | 1..111 | 550 | 100 | Plus |
Dsim\GD11622-PA | 112 | GD11622-PA | 2..71 | 3..72 | 274 | 70 | Plus |
Dsim\GD25013-PA | 689 | GD25013-PA | 524..596 | 8..78 | 206 | 54.8 | Plus |
Dsim\GD20959-PA | 137 | GD20959-PA | 4..76 | 2..71 | 143 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20604-PA | 111 | GJ20604-PA | 1..80 | 1..80 | 405 | 96.2 | Plus |
Dvir\GJ21748-PA | 112 | GJ21748-PA | 3..80 | 4..81 | 303 | 67.9 | Plus |
Dvir\GJ21774-PA | 729 | GJ21774-PA | 557..678 | 4..111 | 247 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15658-PA | 112 | GK15658-PA | 1..89 | 1..89 | 437 | 95.5 | Plus |
Dwil\GK15924-PA | 111 | GK15924-PA | 3..88 | 4..87 | 304 | 66.3 | Plus |
Dwil\GK22092-PA | 730 | GK22092-PA | 555..647 | 6..96 | 248 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\HmgZ-PA | 111 | GE13680-PA | 1..111 | 1..111 | 550 | 100 | Plus |
Dyak\HmgD-PA | 111 | GE12217-PA | 3..78 | 4..79 | 301 | 69.7 | Plus |
Dyak\GE11532-PA | 726 | GE11532-PA | 554..650 | 5..96 | 250 | 52.6 | Plus |
Dyak\GE10308-PA | 138 | GE10308-PA | 4..78 | 2..73 | 172 | 44 | Plus |
Translation from 226 to 561
> RE28596.hyp MSGDRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDK TEWEQKAIKMKEEYNKAVKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKE SSEEEEEDESE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HmgZ-PD | 111 | CG17921-PD | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PC | 111 | CG17921-PC | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PA | 111 | CG17921-PA | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PB | 111 | CG17921-PB | 1..111 | 1..111 | 579 | 100 | Plus |
HmgD-PD | 112 | CG17950-PD | 3..112 | 4..111 | 382 | 64.9 | Plus |