Clone RE28679 Report

Search the DGRC for RE28679

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:286
Well:79
Vector:pFlc-1
Associated Gene/TranscriptCpr65Eb-RA
Protein status:RE28679.pep: gold
Preliminary Size:507
Sequenced Size:1025

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8638 2002-01-01 Sim4 clustering to Release 2
CG8638 2002-04-22 Blastp of sequenced clone
CG8638 2003-01-01 Sim4 clustering to Release 3
Cpr65Eb 2008-04-29 Release 5.5 accounting
Cpr65Eb 2008-08-15 Release 5.9 accounting
Cpr65Eb 2008-12-18 5.12 accounting

Clone Sequence Records

RE28679.complete Sequence

1025 bp (1025 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113441

> RE28679.complete
ATCAAACATAGTTTAGCTCTTTGGGTCAAACCAGCAAATAAACCATAAAC
CAAATCTCAACCTAAGCCAGGCGAAAATGTCGAAGATCAACGTCGTTGTA
CTTGTGGCCATGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTC
CCCGGATGCCCATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGG
AGGATGGCATCTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAG
CAGGAGCAGGGAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTA
CACACCCGAGGGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACG
GATTCCAGCCGCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAG
GCAATCCTGAAGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGG
GGAGTACGAGCACCACGACCATCACCATGACCACCATGAGCATCACCAGA
GCCATGGTCAGGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTG
CTCGCACCTGCGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTA
CGACAGGAAGCTATAATGCTGCATCCGTCCATTGCATCCGTAGCCTCCGC
ATCCATCTTGTCCAGCTGTCCATGTTGTTGCCTGTCTGTTTGCATAGTCC
ATAGACCATCCAACATACGGCATCCAGCATATATAGTGCACATCAAGCAG
CAGAAAGAACCATCGGAGCAACTACATCTGGACGCGGTGACACACCCACT
CACACACACACACACACACACACACACTGTATATATATGTAGGAACCATC
ATACATTTCCATCAACATGCTCCCGGGCTCCTCAAAGGTCCTTCGTCCTC
TGACCCCGGCTCCTTCTCCATTCCGTGTCCGTTGTCGGCTCGACTGACGT
TGACATTTATTGCCAGAGATAATAATAATGTAATAAAAGAAAAATACAAT
TTAAAAAAAGAAAAAAAAAAAAAAA

RE28679.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1077 Cpr65Eb-RA 23..1026 1..1004 5020 100 Plus
Cpr65Eb.a 1228 Cpr65Eb.a 174..1177 1..1004 5020 100 Plus
Cpr65Ec-RA 756 Cpr65Ec-RA 391..431 296..336 160 92.6 Plus
Cpr65Ec-RA 756 Cpr65Ec-RA 293..383 198..288 140 76.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7079933..7080850 1004..89 4435 99.1 Minus
chr3L 24539361 chr3L 7080922..7081009 88..1 440 100 Minus
chr3L 24539361 chr3L 7085693..7085930 198..435 305 75.2 Plus
chr3L 24539361 chr3L 6153946..6154016 327..397 205 85.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7087711..7088626 1004..89 4580 100 Minus
3L 28110227 3L 7088698..7088785 88..1 440 100 Minus
3L 28110227 3L 7093462..7093699 198..435 275 74.4 Plus
3L 28110227 3L 6161396..6161466 327..397 205 85.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7080811..7081726 1004..89 4580 100 Minus
3L 28103327 3L 7081798..7081885 88..1 440 100 Minus
3L 28103327 3L 6154496..6154566 327..397 205 85.9 Plus
3L 28103327 3L 7086660..7086700 296..336 160 92.6 Plus
3L 28103327 3L 7086562..7086652 198..288 140 76.9 Plus
Blast to na_te.dros performed 2019-03-15 16:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 5925..6060 15..150 111 59.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 5763..5898 15..150 111 59.3 Plus

RE28679.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:23:17 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7079929..7080850 89..1010 98 <- Minus
chr3L 7080922..7081009 1..88 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:23 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 77..616 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:51 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 77..616 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:01:28 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 77..616 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:08 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 77..616 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:11 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 77..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:39:22 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..1008 1..1008 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:51 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..1008 1..1008 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:28 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 3..1004 1..1002 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:09 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..1008 1..1008 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:11 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 3..1004 1..1002 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:17 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7088698..7088785 1..88 100   Minus
3L 7087707..7088626 89..1010 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:17 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7088698..7088785 1..88 100   Minus
3L 7087707..7088626 89..1010 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:17 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7088698..7088785 1..88 100   Minus
3L 7087707..7088626 89..1010 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:28 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7080807..7081726 89..1010 99 <- Minus
arm_3L 7081798..7081885 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:13 Download gff for RE28679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7080807..7081726 89..1010 99 <- Minus
3L 7081798..7081885 1..88 100   Minus

RE28679.pep Sequence

Translation from 76 to 615

> RE28679.pep
MSKINVVVLVAMSVLLGVQARPSDSPDAHAEIRSFVNELKQEDGIYNYQF
ETSNGIAQQEQGVGGYYASGSSQYYTPEGQLIQLTYTADENGFQPQGEHL
PTPHPIPEAILKSLEYNRNHPEEDGEYEHHDHHHDHHEHHQSHGQEQGKQ
YLQPAGALLAPASSPVLSVGQVLPYDRKL*

RE28679.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24793-PA 181 GF24793-PA 1..181 1..179 589 74 Plus
Dana\GF25006-PA 129 GF25006-PA 20..121 21..124 297 68.3 Plus
Dana\GF10617-PA 121 GF10617-PA 8..114 12..121 284 53.6 Plus
Dana\GF10274-PA 119 GF10274-PA 39..116 43..121 246 63.3 Plus
Dana\GF24794-PA 127 GF24794-PA 34..112 43..121 224 53.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14999-PA 178 GG14999-PA 1..178 1..179 733 89.4 Plus
Dere\GG14401-PA 127 GG14401-PA 1..124 1..129 332 62 Plus
Dere\GG15458-PA 134 GG15458-PA 5..118 8..122 302 55.7 Plus
Dere\GG15456-PA 134 GG15456-PA 5..118 8..122 299 54.8 Plus
Dere\GG15459-PA 122 GG15459-PA 6..114 10..121 258 49.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16084-PA 157 GH16084-PA 1..121 1..121 503 80.2 Plus
Dgri\GH15387-PA 126 GH15387-PA 3..118 7..124 344 66.1 Plus
Dgri\GH15388-PA 153 GH15388-PA 4..118 8..124 277 58.1 Plus
Dgri\GH15299-PA 118 GH15299-PA 4..117 7..123 256 50 Plus
Dgri\GH16083-PA 123 GH16083-PA 1..115 1..121 248 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-PA 179 CG8638-PA 1..179 1..179 959 100 Plus
Cpr65Ec-PA 127 CG8634-PA 1..119 1..124 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 5..118 8..122 313 53 Plus
Cpr67Fa1-PA 134 CG7941-PA 5..118 8..122 312 52.2 Plus
Cpr67Fb-PA 122 CG18348-PA 2..114 4..121 271 45.8 Plus
Edg78E-PB 122 CG7673-PB 16..120 23..128 258 48.1 Plus
Edg78E-PA 122 CG7673-PA 16..120 23..128 258 48.1 Plus
Cpr78Cc-PA 119 CG7658-PA 1..118 1..123 255 53.6 Plus
Pcp-PA 184 CG3440-PA 5..123 4..127 254 43.2 Plus
Cpr49Aa-PB 144 CG30045-PB 5..129 7..121 232 43.2 Plus
Cpr49Ae-PA 134 CG8505-PA 8..124 9..116 221 45.4 Plus
Cpr65Ea-PA 127 CG8640-PA 34..112 43..121 219 51.9 Plus
Cpr47Ef-PD 601 CG13214-PD 126..225 20..114 215 49.5 Plus
Cpr47Ef-PC 612 CG13214-PC 126..225 20..114 215 49.5 Plus
Cpr65Az-PA 239 CG12330-PA 126..207 43..115 209 52.4 Plus
Lcp2-PB 126 CG8697-PB 5..126 7..130 194 33.1 Plus
Lcp2-PA 126 CG8697-PA 5..126 7..130 194 33.1 Plus
Lcp1-PB 130 CG11650-PB 27..130 25..130 188 34.9 Plus
Lcp1-PA 130 CG11650-PA 27..130 25..130 188 34.9 Plus
Lcp4-PB 112 CG2044-PB 4..112 6..124 182 34.5 Plus
Lcp4-PA 112 CG2044-PA 4..112 6..124 182 34.5 Plus
Cpr78Cb-PB 140 CG7663-PB 39..131 30..123 182 43.6 Plus
Cpr78Cb-PA 140 CG7663-PA 39..131 30..123 182 43.6 Plus
Cpr49Ah-PA 190 CG8515-PA 57..144 37..115 177 40.9 Plus
Cpr65Av-PA 111 CG32405-PA 4..109 2..101 174 39.8 Plus
Cpr49Af-PB 126 CG8510-PB 32..123 43..126 166 37 Plus
Cpr49Af-PA 126 CG8510-PA 32..123 43..126 166 37 Plus
Lcp3-PB 112 CG2043-PB 17..112 27..124 163 36.7 Plus
Lcp3-PA 112 CG2043-PA 17..112 27..124 163 36.7 Plus
Cpr47Ea-PA 135 CG9079-PA 11..127 8..109 162 35.6 Plus
Cpr49Ac-PE 285 CG8502-PE 129..229 38..136 160 32.4 Plus
Cpr49Ac-PA 294 CG8502-PA 138..238 38..136 160 32.4 Plus
Cpr49Ac-PG 315 CG8502-PG 159..259 38..136 160 32.4 Plus
Cpr49Ac-PF 315 CG8502-PF 159..259 38..136 160 32.4 Plus
Cpr49Ac-PC 324 CG8502-PC 168..268 38..136 160 32.4 Plus
Cpr78Ca-PA 127 CG11310-PA 44..120 44..124 159 40.7 Plus
Cpr65Ax2-PB 102 CG18777-PB 34..97 46..101 143 46.9 Plus
Cpr65Ax2-PA 102 CG18777-PA 34..97 46..101 143 46.9 Plus
Cpr65Ax1-PA 102 CG34270-PA 34..97 46..101 143 46.9 Plus
Cpr49Ab-PA 259 CG30042-PA 162..254 39..117 142 38.7 Plus
Lcp65Aa-PA 102 CG7287-PA 4..100 9..101 141 33.7 Plus
Lcp65Ac-PA 109 CG6956-PA 5..103 7..101 141 36.9 Plus
Cpr65Aw-PA 117 CG32404-PA 11..104 14..101 139 38.5 Plus
Cpr47Eg-PA 117 CG9070-PA 5..114 10..121 137 35.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12347-PA 159 GI12347-PA 1..159 1..179 521 67 Plus
Dmoj\GI12993-PA 126 GI12993-PA 5..115 9..121 323 67.3 Plus
Dmoj\GI12346-PA 108 GI12346-PA 22..100 43..121 266 64.6 Plus
Dmoj\GI12994-PA 134 GI12994-PA 5..114 9..122 263 56.1 Plus
Dmoj\GI12010-PA 117 GI12010-PA 1..115 1..121 240 45.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25022-PA 129 GL25022-PA 1..121 1..124 342 64.5 Plus
Dper\GL25146-PA 163 GL25146-PA 22..108 18..128 313 63.1 Plus
Dper\GL11748-PA 122 GL11748-PA 4..114 10..121 278 50 Plus
Dper\GL24678-PA 119 GL24678-PA 5..119 6..124 262 47.9 Plus
Dper\GL24679-PA 120 GL24679-PA 1..116 1..121 245 47.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21228-PA 183 GA21228-PA 22..183 18..179 578 75.7 Plus
Dpse\GA23698-PA 190 GA23698-PA 22..132 18..128 515 90.1 Plus
Dpse\GA23589-PA 96 GA23589-PA 1..92 1..95 291 63.2 Plus
Dpse\GA14899-PA 122 GA14899-PA 4..114 10..121 278 50 Plus
Dpse\GA23947-PA 119 GA23947-PA 5..119 6..124 262 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13790-PA 179 GM13790-PA 1..179 1..179 908 97.2 Plus
Dsec\GM14815-PA 127 GM14815-PA 1..119 1..124 323 61.3 Plus
Dsec\GM25234-PA 122 GM25234-PA 2..114 4..121 265 44.9 Plus
Dsec\GM25233-PA 134 GM25233-PA 5..118 8..122 248 53.9 Plus
Dsec\GM25232-PA 134 GM25232-PA 5..118 8..122 248 53.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13091-PA 179 GD13091-PA 1..179 1..179 919 98.3 Plus
Dsim\GD13990-PA 127 GD13990-PA 1..119 1..124 324 62.1 Plus
Dsim\GD14264-PA 134 GD14264-PA 5..118 8..122 256 54.8 Plus
Dsim\GD14265-PA 134 GD14265-PA 5..118 8..122 249 53.9 Plus
Dsim\GD14266-PA 116 GD14266-PA 5..116 8..120 246 46.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12238-PA 160 GJ12238-PA 1..160 1..179 535 63.7 Plus
Dvir\GJ13136-PA 127 GJ13136-PA 1..119 4..124 369 68.6 Plus
Dvir\GJ13137-PA 139 GJ13137-PA 4..115 8..122 314 57.4 Plus
Dvir\GJ12237-PA 123 GJ12237-PA 4..115 6..121 255 45.7 Plus
Dvir\GJ12082-PA 120 GJ12082-PA 5..113 9..121 242 46.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17540-PA 191 GK17540-PA 1..191 1..179 579 67.2 Plus
Dwil\GK16649-PA 134 GK16649-PA 21..125 18..124 353 66.4 Plus
Dwil\GK17780-PA 112 GK17780-PA 11..104 27..121 260 55.8 Plus
Dwil\GK20466-PA 121 GK20466-PA 5..119 9..123 246 46.6 Plus
Dwil\GK20425-PA 121 GK20425-PA 9..113 14..121 234 46.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20445-PA 172 GE20445-PA 1..172 1..179 780 89.4 Plus
Dyak\GE21591-PA 127 GE21591-PA 1..119 1..124 326 62.9 Plus
Dyak\GE21769-PA 134 GE21769-PA 37..118 41..122 293 68.3 Plus
Dyak\GE21770-PA 122 GE21770-PA 8..116 12..123 261 49.1 Plus
Dyak\GE22714-PA 120 GE22714-PA 8..112 14..121 243 48.1 Plus

RE28679.hyp Sequence

Translation from 76 to 615

> RE28679.hyp
MSKINVVVLVAMSVLLGVQARPSDSPDAHAEIRSFVNELKQEDGIYNYQF
ETSNGIAQQEQGVGGYYASGSSQYYTPEGQLIQLTYTADENGFQPQGEHL
PTPHPIPEAILKSLEYNRNHPEEDGEYEHHDHHHDHHEHHQSHGQEQGKQ
YLQPAGALLAPASSPVLSVGQVLPYDRKL*

RE28679.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-PA 179 CG8638-PA 1..179 1..179 959 100 Plus
Cpr65Ec-PA 127 CG8634-PA 1..119 1..124 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 5..118 8..122 313 53 Plus
Cpr67Fa1-PA 134 CG7941-PA 5..118 8..122 312 52.2 Plus
Cpr67Fb-PA 122 CG18348-PA 2..114 4..121 271 45.8 Plus