BDGP Sequence Production Resources |
Search the DGRC for RE28720
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 287 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12643-RA |
Protein status: | RE28720.pep: gold |
Sequenced Size: | 1080 |
Gene | Date | Evidence |
---|---|---|
CG12643 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12643 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12643 | 2008-04-29 | Stopped prior to 5.5 |
CG12643-RA | 2009-01-21 | est gleaning |
1080 bp assembled on 2009-06-05
GenBank Submission: BT088771.1
> RE28720.complete AGTTCGCATCGAGACTCCGAACAGAGCGGCAGTCGCTCCAGTTGCAGTTG CAGATAGAGATACAAATACAGATACAACTACAGATATAGATACAGACTTA AGCGGATCGAGGCTACATATACAAAATATAGCTTCTTTGGCCAACTATAA ACCACAACCAGTGCAAGAAAAAGAAGTGCGAAAATGCCGTTCCCCATCCA TCCGCCCAAGCAGATGCCCTGCCCCCACTGGCAGCACTTCCCCATCAGTC CCGTGGACAGTAAGCCGAATCCATTCGATTCCGTCGGCGGAGCGGCAGCA GCGGCCACCCAGGTCAACATAGGGGTTAACAAGCCACCGGAGCCGGTATC CTATCGCTATTGTTTGCAGTGCAAGAACTCCGGCAAGGAGCCAATAAACC CCGCCGACAGGGAGTAGCCCCAAAACCATGGAGGTGACCCATCAATCCAC ACAATCAGCCATCACCTGTAATCAGCCACTTCAATAGAGGACGCACTTGG AGAGCCAATTGAAACGGGAAATAATCATAAAAATCACCGAACACAGTTTT GAATTCAAGAGACAAACACATGTTTCCTTTATCAAACCATTTTTTCTGTG CTGCTACTCATATTTTTCTATTCAAAAGGATCTGAATTTAAAGGTTACAC ATAAAACGATATAATAATATTCAGTTGAATGTGAATAACCGGTCAGACAT TATTTTAAAGTCATTTAAATGCACCATTGGTCTACTAAAAGCAGGCCAGA AAGTAACTATGTATAAGCAGGCATTTGATAATTTAATATCAGGTCCAAAC GCAGCCCAATTTTTTTCTGTGTTGTTATTATTTAACCTAAACTAAGCACA TGTTCCATTCATTTTTTTGTTGCCCATTTAAGCAGTGTTTTTTTCGATAT AATTAAGCTAAGCATTTTGTACGTATTTAATTTGTATTTAGAGCTAAAGA CTACAGTTTATACATTTTATGAATTTTTTTTATATATTTGTATAAGAGAA GAGCAAATAAACGCACGACGCATTTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12643-RA | 1034 | CG12643-RA | 1..1031 | 1..1031 | 5140 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 10272325..10273355 | 1031..1 | 5140 | 99.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 10155813..10156841 | 1..1026 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 1..234 | 184..417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 1..234 | 184..417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 1..234 | 184..417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 1..234 | 184..417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 1..1025 | 1..1026 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 1..1025 | 1..1026 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 7..1031 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12643-RA | 7..1031 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10264232..10265257 | 1..1026 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10264232..10265257 | 1..1026 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10264232..10265257 | 1..1026 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 10158265..10159290 | 1..1026 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10272330..10273355 | 1..1026 | 99 | Minus |
Translation from 0 to 321
> RE28720.hyp VRIETPNRAAVAPVAVADRDTNTDTTTDIDTDLSGSRLHIQNIASLANYK PQPVQEKEVRKCRSPSIRPSRCPAPTGSTSPSVPWTVSRIHSIPSAERQQ RPPRST*
Translation from 183 to 416
> RE28720.pep MPFPIHPPKQMPCPHWQHFPISPVDSKPNPFDSVGGAAAAATQVNIGVNK PPEPVSYRYCLQCKNSGKEPINPADRE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22634-PA | 78 | GF22634-PA | 1..78 | 1..77 | 271 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18935-PA | 77 | GG18935-PA | 1..77 | 1..77 | 396 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17782-PA | 71 | GH17782-PA | 1..71 | 1..77 | 266 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12643-PA | 77 | CG12643-PA | 1..77 | 1..77 | 440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15127-PA | 80 | GI15127-PA | 1..73 | 1..69 | 226 | 64.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15937-PA | 76 | GL15937-PA | 1..76 | 1..77 | 273 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11736-PA | 75 | GA11736-PA | 1..75 | 1..77 | 261 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11327-PA | 77 | GM11327-PA | 1..77 | 1..77 | 398 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24647-PA | 77 | GD24647-PA | 1..77 | 1..77 | 398 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25497-PA | 77 | GK25497-PA | 1..68 | 1..67 | 253 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15406-PA | 77 | GE15406-PA | 1..77 | 1..77 | 394 | 97.4 | Plus |