BDGP Sequence Production Resources |
Search the DGRC for RE28850
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 288 |
Well: | 50 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18173-RA |
Protein status: | RE28850.pep: gold |
Preliminary Size: | 1515 |
Sequenced Size: | 1916 |
Gene | Date | Evidence |
---|---|---|
CG18173 | 2001-12-14 | Blastp of sequenced clone |
CG18173 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18173 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18173 | 2008-04-29 | Release 5.5 accounting |
CG18173 | 2008-08-15 | Release 5.9 accounting |
CG18173 | 2008-12-18 | 5.12 accounting |
1916 bp (1916 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071247
> RE28850.complete AGTCGCCATGGACAGTCGAGCGGCAGCAGAACCCATTCCCCATGTGAGCC CGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTCGAGGAGCGC CTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTGGGGAACCCT GGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCTTGTGGTGCA TTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCATGGCTCTGCC GACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCCCTGCATTCT GCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGACTGCTAATGC TCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTGGAACGGGCT CGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCATGTGCTTGTC CATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCATTCTGGCCA TCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGGCAGTTCGGA GCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCACCATGGCCAT GGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGAGTGTGATCT ACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACGGTGTCAATT TTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCAGCATCTGAA TGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTCTGGTCAGCA TTCTGGCCCGCAAGGATCTCCATTTGCTGCCATTGGGATTCGGTTTGTTG GTGATCCACCAGTTTGGCCTGAGTGTCCTGGGCATCTCCGACTATGTGAT GAACGAGGATGTGGAGCGCTCGAGTTTCCTTAATGCAAATCGCGAAGGTC TGGTTTCCTTGCCAGGATTCGTTGGACTGTTCCTGCTGTCCATTTACGTC AACCGTTGGATGGTGGCGAAAAGTCTGCTCACCTACTCCGAGTTTGTCAG GAAGCTGAGGCGTCTGTTCTATCTGGTGCTTATCCTGTGGACCTCGTTCG TCATCAGTGCCTACGAAATTGGTATCTCCCGGGTGACCTGCAATCTGGGC TATGTCATATGGATGCTGGCCATCGGGAGCACCACTTTGTGTGCCAGTTT CGGAGCCATAGACTTTGCGATCAACAGCGTCATGCCGTGGGATCCGAATC CGTGGGAGGATCATGAGAAGGGTCTTCTATCGGGGGAGGCTGTGGTCAAG AAAAGGGGCGGATCCGTTGTTCCGTTCACGATTAGCCAGGCTCTGAACAA AAATGGATTGACATTCTTCCTGGTGGCCAACATTCTGACCGGCATGGTGA ACATCTTTCTCAGGCCAGAGGATCGCTCTCATTCCGAGTCCGTCATCATT CTGCTGGTCTACATGTTTCTGGCCACCAAGCTGGTTCACGAATTGCTAAA GAGGGGTATTCGACTGGCCTGATATCCCCCGCGTGCCCTGTGATTTAACT GAATTTAATGTAGAAGTAACTATTAGAAATGCAATTTATGTAGGGAATTG TGAAATTAGGAATCTATTACAGTCCACTTCAGTTATATATTATCTTTATG ATTTAATTCCTACTTATTTACTTGATAATGCTGTGTAACTAGACTCGCAA TTGGAAAGGTTTTCAAATCGATTAGGTCATAATGGGTAGGTTTTATTTCA TGTGGAAACTTTATCAGTTGTCATAAACTACAATGTTTAAATTATAAGCT ATTGCATTTAAGAAGCTTAACTTTTTGTATTGCCTATATCTTATTTTAAG TAAACATAGTCTGTTCCTTTGACATAATTAAACATTTTAATCTACTTGGC AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18173-RA | 2261 | CG18173-RA | 301..2200 | 1..1899 | 9460 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 8509..8614 | 1539..1640 | 114 | 60.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1735412..1736470 | 843..1900 | 99 | <- | Minus |
chr3L | 1736525..1737366 | 1..842 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1515 | 8..1522 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1515 | 8..1522 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1515 | 8..1522 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1515 | 8..1522 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1515 | 8..1522 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1899 | 1..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1899 | 1..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 17..1916 | 1..1899 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 1..1899 | 1..1898 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18173-RA | 17..1916 | 1..1899 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1735852..1736910 | 843..1900 | 99 | <- | Minus |
3L | 1736965..1737806 | 1..842 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1735852..1736910 | 843..1900 | 99 | <- | Minus |
3L | 1736965..1737806 | 1..842 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1735852..1736910 | 843..1900 | 99 | <- | Minus |
3L | 1736965..1737806 | 1..842 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1735852..1736910 | 843..1900 | 99 | <- | Minus |
arm_3L | 1736965..1737806 | 1..842 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1735852..1736910 | 843..1900 | 99 | <- | Minus |
3L | 1736965..1737806 | 1..842 | 100 | Minus |
Translation from 0 to 1521
> RE28850.hyp VAMDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTL VQSGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCIL LVSVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLS ILRALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAM VSRRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLN AFFTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVM NEDVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVR KLRRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASF GAIDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNK NGLTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLK RGIRLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18173-PB | 504 | CG18173-PB | 1..504 | 3..506 | 2579 | 100 | Plus |
CG18173-PA | 504 | CG18173-PA | 1..504 | 3..506 | 2579 | 100 | Plus |
CG9870-PA | 459 | CG9870-PA | 21..459 | 47..506 | 785 | 40.2 | Plus |
Translation from 7 to 1521
> RE28850.pep MDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTLVQ SGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCILLV SVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLSIL RALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAMVS RRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLNAF FTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVMNE DVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVRKL RRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASFGA IDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNKNG LTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLKRG IRLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24967-PA | 500 | GF24967-PA | 1..500 | 1..504 | 1765 | 70.2 | Plus |
Dana\GF15507-PA | 462 | GF15507-PA | 15..462 | 39..504 | 748 | 39.7 | Plus |
Dana\GF20083-PA | 480 | GF20083-PA | 25..480 | 36..504 | 638 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14566-PA | 502 | GG14566-PA | 1..502 | 1..504 | 2390 | 90.1 | Plus |
Dere\GG24855-PA | 459 | GG24855-PA | 17..459 | 41..504 | 743 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15724-PA | 475 | GH15724-PA | 26..475 | 50..504 | 1223 | 56.7 | Plus |
Dgri\GH10260-PA | 484 | GH10260-PA | 47..484 | 41..504 | 732 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PIG-Wb-PB | 504 | CG18173-PB | 1..504 | 1..504 | 2579 | 100 | Plus |
PIG-Wb-PA | 504 | CG18173-PA | 1..504 | 1..504 | 2579 | 100 | Plus |
PIG-Wa-PA | 459 | CG9870-PA | 21..459 | 45..504 | 785 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12778-PA | 494 | GI12778-PA | 17..494 | 38..504 | 1107 | 49.2 | Plus |
Dmoj\GI12779-PA | 1529 | GI12779-PA | 482..802 | 97..409 | 812 | 52.2 | Plus |
Dmoj\GI15507-PA | 484 | GI15507-PA | 55..484 | 45..504 | 717 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20798-PA | 493 | GL20798-PA | 10..493 | 28..504 | 1446 | 63.4 | Plus |
Dper\GL26555-PA | 440 | GL26555-PA | 1..440 | 28..504 | 745 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14823-PA | 493 | GA14823-PA | 10..493 | 28..504 | 1444 | 63.2 | Plus |
Dpse\GA22087-PA | 455 | GA22087-PA | 1..455 | 28..504 | 830 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14174-PA | 458 | GM14174-PA | 1..458 | 1..504 | 2199 | 85.9 | Plus |
Dsec\GM18338-PA | 459 | GM18338-PA | 17..459 | 41..504 | 756 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13443-PA | 503 | GD13443-PA | 1..503 | 1..504 | 2479 | 94.4 | Plus |
Dsim\GD17607-PA | 320 | GD17607-PA | 1..320 | 185..504 | 1599 | 95.6 | Plus |
Dsim\GD23153-PA | 407 | GD23153-PA | 17..407 | 95..504 | 734 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16076-PA | 475 | GJ16076-PA | 16..475 | 38..504 | 1112 | 53.7 | Plus |
Dvir\GJ17289-PA | 474 | GJ17289-PA | 15..474 | 36..504 | 769 | 40.8 | Plus |