Clone RE28850 Report

Search the DGRC for RE28850

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:288
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG18173-RA
Protein status:RE28850.pep: gold
Preliminary Size:1515
Sequenced Size:1916

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18173 2001-12-14 Blastp of sequenced clone
CG18173 2002-01-01 Sim4 clustering to Release 2
CG18173 2003-01-01 Sim4 clustering to Release 3
CG18173 2008-04-29 Release 5.5 accounting
CG18173 2008-08-15 Release 5.9 accounting
CG18173 2008-12-18 5.12 accounting

Clone Sequence Records

RE28850.complete Sequence

1916 bp (1916 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071247

> RE28850.complete
AGTCGCCATGGACAGTCGAGCGGCAGCAGAACCCATTCCCCATGTGAGCC
CGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTCGAGGAGCGC
CTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTGGGGAACCCT
GGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCTTGTGGTGCA
TTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCATGGCTCTGCC
GACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCCCTGCATTCT
GCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGACTGCTAATGC
TCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTGGAACGGGCT
CGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCATGTGCTTGTC
CATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCATTCTGGCCA
TCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGGCAGTTCGGA
GCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCACCATGGCCAT
GGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGAGTGTGATCT
ACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACGGTGTCAATT
TTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCAGCATCTGAA
TGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTCTGGTCAGCA
TTCTGGCCCGCAAGGATCTCCATTTGCTGCCATTGGGATTCGGTTTGTTG
GTGATCCACCAGTTTGGCCTGAGTGTCCTGGGCATCTCCGACTATGTGAT
GAACGAGGATGTGGAGCGCTCGAGTTTCCTTAATGCAAATCGCGAAGGTC
TGGTTTCCTTGCCAGGATTCGTTGGACTGTTCCTGCTGTCCATTTACGTC
AACCGTTGGATGGTGGCGAAAAGTCTGCTCACCTACTCCGAGTTTGTCAG
GAAGCTGAGGCGTCTGTTCTATCTGGTGCTTATCCTGTGGACCTCGTTCG
TCATCAGTGCCTACGAAATTGGTATCTCCCGGGTGACCTGCAATCTGGGC
TATGTCATATGGATGCTGGCCATCGGGAGCACCACTTTGTGTGCCAGTTT
CGGAGCCATAGACTTTGCGATCAACAGCGTCATGCCGTGGGATCCGAATC
CGTGGGAGGATCATGAGAAGGGTCTTCTATCGGGGGAGGCTGTGGTCAAG
AAAAGGGGCGGATCCGTTGTTCCGTTCACGATTAGCCAGGCTCTGAACAA
AAATGGATTGACATTCTTCCTGGTGGCCAACATTCTGACCGGCATGGTGA
ACATCTTTCTCAGGCCAGAGGATCGCTCTCATTCCGAGTCCGTCATCATT
CTGCTGGTCTACATGTTTCTGGCCACCAAGCTGGTTCACGAATTGCTAAA
GAGGGGTATTCGACTGGCCTGATATCCCCCGCGTGCCCTGTGATTTAACT
GAATTTAATGTAGAAGTAACTATTAGAAATGCAATTTATGTAGGGAATTG
TGAAATTAGGAATCTATTACAGTCCACTTCAGTTATATATTATCTTTATG
ATTTAATTCCTACTTATTTACTTGATAATGCTGTGTAACTAGACTCGCAA
TTGGAAAGGTTTTCAAATCGATTAGGTCATAATGGGTAGGTTTTATTTCA
TGTGGAAACTTTATCAGTTGTCATAAACTACAATGTTTAAATTATAAGCT
ATTGCATTTAAGAAGCTTAACTTTTTGTATTGCCTATATCTTATTTTAAG
TAAACATAGTCTGTTCCTTTGACATAATTAAACATTTTAATCTACTTGGC
AAAAAAAAAAAAAAAA

RE28850.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-RA 2261 CG18173-RA 301..2200 1..1899 9460 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1735413..1736471 1899..842 5245 99.9 Minus
chr3L 24539361 chr3L 1736523..1737366 844..1 4220 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1735853..1736911 1899..842 5245 99.9 Minus
3L 28110227 3L 1736963..1737806 844..1 4220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1735853..1736911 1899..842 5255 99.9 Minus
3L 28103327 3L 1736963..1737806 844..1 4220 100 Minus
Blast to na_te.dros performed 2019-03-16 03:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 8509..8614 1539..1640 114 60.4 Plus

RE28850.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:20:03 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1735412..1736470 843..1900 99 <- Minus
chr3L 1736525..1737366 1..842 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:31 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1515 8..1522 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:13 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1515 8..1522 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:30 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1515 8..1522 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:47 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1515 8..1522 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:38 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1515 8..1522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:32 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1899 1..1898 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:13 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1899 1..1898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:30 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 17..1916 1..1899 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:47 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1899 1..1898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:38 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 17..1916 1..1899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:20:03 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1735852..1736910 843..1900 99 <- Minus
3L 1736965..1737806 1..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:20:03 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1735852..1736910 843..1900 99 <- Minus
3L 1736965..1737806 1..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:20:03 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1735852..1736910 843..1900 99 <- Minus
3L 1736965..1737806 1..842 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:30 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1735852..1736910 843..1900 99 <- Minus
arm_3L 1736965..1737806 1..842 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:08 Download gff for RE28850.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1735852..1736910 843..1900 99 <- Minus
3L 1736965..1737806 1..842 100   Minus

RE28850.hyp Sequence

Translation from 0 to 1521

> RE28850.hyp
VAMDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTL
VQSGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCIL
LVSVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLS
ILRALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAM
VSRRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLN
AFFTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVM
NEDVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVR
KLRRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASF
GAIDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNK
NGLTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLK
RGIRLA*

RE28850.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-PB 504 CG18173-PB 1..504 3..506 2579 100 Plus
CG18173-PA 504 CG18173-PA 1..504 3..506 2579 100 Plus
CG9870-PA 459 CG9870-PA 21..459 47..506 785 40.2 Plus

RE28850.pep Sequence

Translation from 7 to 1521

> RE28850.pep
MDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTLVQ
SGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCILLV
SVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLSIL
RALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAMVS
RRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLNAF
FTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVMNE
DVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVRKL
RRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASFGA
IDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNKNG
LTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLKRG
IRLA*

RE28850.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24967-PA 500 GF24967-PA 1..500 1..504 1765 70.2 Plus
Dana\GF15507-PA 462 GF15507-PA 15..462 39..504 748 39.7 Plus
Dana\GF20083-PA 480 GF20083-PA 25..480 36..504 638 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14566-PA 502 GG14566-PA 1..502 1..504 2390 90.1 Plus
Dere\GG24855-PA 459 GG24855-PA 17..459 41..504 743 40.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15724-PA 475 GH15724-PA 26..475 50..504 1223 56.7 Plus
Dgri\GH10260-PA 484 GH10260-PA 47..484 41..504 732 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-Wb-PB 504 CG18173-PB 1..504 1..504 2579 100 Plus
PIG-Wb-PA 504 CG18173-PA 1..504 1..504 2579 100 Plus
PIG-Wa-PA 459 CG9870-PA 21..459 45..504 785 40.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12778-PA 494 GI12778-PA 17..494 38..504 1107 49.2 Plus
Dmoj\GI12779-PA 1529 GI12779-PA 482..802 97..409 812 52.2 Plus
Dmoj\GI15507-PA 484 GI15507-PA 55..484 45..504 717 40 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20798-PA 493 GL20798-PA 10..493 28..504 1446 63.4 Plus
Dper\GL26555-PA 440 GL26555-PA 1..440 28..504 745 38.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14823-PA 493 GA14823-PA 10..493 28..504 1444 63.2 Plus
Dpse\GA22087-PA 455 GA22087-PA 1..455 28..504 830 40.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14174-PA 458 GM14174-PA 1..458 1..504 2199 85.9 Plus
Dsec\GM18338-PA 459 GM18338-PA 17..459 41..504 756 40.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13443-PA 503 GD13443-PA 1..503 1..504 2479 94.4 Plus
Dsim\GD17607-PA 320 GD17607-PA 1..320 185..504 1599 95.6 Plus
Dsim\GD23153-PA 407 GD23153-PA 17..407 95..504 734 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16076-PA 475 GJ16076-PA 16..475 38..504 1112 53.7 Plus
Dvir\GJ17289-PA 474 GJ17289-PA 15..474 36..504 769 40.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17560-PA 491 GK17560-PA 15..491 21..504 1336 56.6 Plus
Dwil\GK23935-PA 511 GK23935-PA 67..511 45..504 789 42.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20920-PA 502 GE20920-PA 1..502 1..504 2395 90.5 Plus
Dyak\GE18153-PA 459 GE18153-PA 17..459 41..504 757 40.3 Plus