BDGP Sequence Production Resources |
Search the DGRC for RE28913
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 289 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10340-RA |
Protein status: | RE28913.pep: gold |
Sequenced Size: | 934 |
Gene | Date | Evidence |
---|---|---|
CG10340 | 2008-04-29 | Release 5.5 accounting |
CG10340 | 2008-04-29 | Picked prior to 5.5 |
CG10340 | 2008-08-15 | Release 5.9 accounting |
CG10340 | 2008-12-18 | 5.12 accounting |
934 bp assembled on 2007-09-24
GenBank Submission: BT031014
> RE28913.complete ATAATTTTTGATGTGAGGTGAGGAAATGGCATGCGCCAAGAAATTGCTTT TTCGCGTTTTCCTGAATAACTCTTTGACGGCGAACCGCACAATCACCATG TCCGCCGCGCGACGTGCCGAGGAGGCCATTGAGAAGCTGAAGGAGGACAA TCCCTACTACTCCAAGTACGCGAGCAAGATTGCCAAGTTGCAGCAGACGT CGGCTGAGGAGTTCCTGGATCGCGTGGAGCGTGTGGTGAATCCCATCAAA GATGGGCAGAGCCAGGCCAGGTCCTACTCCGAGCTTCTGAATCCCAAGCA AAAACTGCAGGCTGAGCAGGCAGCTGAACTGCCCCACAAGAAGCTCACTG ATATCATGAAACTGGAACTGATTGAGGACAAGACCGCCGAAGAGGTCTCC CAGATTTGGCTGGAGTACCATAAGACCAAGGAGGTCCTGGCCGCCACTCT AAGCACATCTCAGTACGAGAACCTCATGGCGCGCGCCAAGGAGCACCCCG TCTTTCTGCTGCCACTGCCCCGCAGTGAGGGATTCGAGTTTGTCATGCTC CAGTTCGCAGCCAACACCGTGCACTTCACTCCGCTTTTGGCGTACCAGGT GCACCATGAGAACGCTCCGGAGTGTCTCACAGTGGTTCACTATACCGAGG TCCAAGACAAGGGTGTAGTTCTCATGCGCGGTGAATACGACACTAAGGTA CTCACAGCCCAGGAGGCTCAGTGTCTGGCCAATGAGTTGCAGATGTTCTA CCTGAAGCCCGACGAGGGCAAGCTGCGCTTGCTGAACACTTTTACCCGTA AGCCGGACGAGTTCAAGCACATGGATCTAATTAAGGAAGTTGAGAACATA CAGCTGGTCTAGGCCCTGCGATTTTAATCAAAATAAATAGAACAAACACG ACAAGGATATATTAAACACGAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10340-RA | 1026 | CG10340-RA | 110..1026 | 1..917 | 4585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12437951..12438600 | 271..920 | 100 | <- | Minus |
chr3R | 12438657..12438926 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 1..837 | 26..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 1..837 | 26..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 1..837 | 26..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 1..837 | 26..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 1..837 | 26..862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 15..920 | 1..906 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 15..920 | 1..906 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 19..938 | 1..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 15..920 | 1..906 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10340-RA | 19..938 | 1..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16613398..16614047 | 271..920 | 100 | <- | Minus |
3R | 16614104..16614373 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16613398..16614047 | 271..920 | 100 | <- | Minus |
3R | 16614104..16614373 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16613398..16614047 | 271..920 | 100 | <- | Minus |
3R | 16614104..16614373 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12439120..12439769 | 271..920 | 100 | <- | Minus |
arm_3R | 12439826..12440095 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16354229..16354878 | 271..920 | 100 | <- | Minus |
3R | 16354935..16355204 | 1..270 | 100 | Minus |
Translation from 25 to 861
> RE28913.hyp MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYAS KIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAA ELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENL MARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPEC LTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKL RLLNTFTRKPDEFKHMDLIKEVENIQLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10340-PA | 278 | CG10340-PA | 1..278 | 1..278 | 1412 | 100 | Plus |
Translation from 25 to 861
> RE28913.pep MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYAS KIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAA ELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENL MARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPEC LTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKL RLLNTFTRKPDEFKHMDLIKEVENIQLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17929-PA | 277 | GF17929-PA | 1..276 | 1..277 | 1293 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16819-PA | 278 | GG16819-PA | 1..278 | 1..278 | 1446 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20483-PA | 276 | GH20483-PA | 1..275 | 1..277 | 1156 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10340-PA | 278 | CG10340-PA | 1..278 | 1..278 | 1412 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10384-PA | 253 | GI10384-PA | 1..252 | 25..277 | 1141 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27290-PA | 277 | GL27290-PA | 1..276 | 1..277 | 1196 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27026-PA | 278 | GA27026-PA | 1..277 | 1..277 | 1219 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15417-PA | 254 | GM15417-PA | 1..254 | 25..278 | 1333 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20275-PA | 278 | GD20275-PA | 1..278 | 1..278 | 1462 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22845-PA | 253 | GJ22845-PA | 1..253 | 25..278 | 1143 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22832-PA | 254 | GK22832-PA | 1..253 | 25..277 | 1161 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\anon-EST:fe2A5-PA | 278 | GE26137-PA | 1..278 | 1..278 | 1428 | 96 | Plus |