BDGP Sequence Production Resources |
Search the DGRC for RE28995
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 289 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Nxt1-RA |
Protein status: | RE28995.pep: gold |
Preliminary Size: | 805 |
Sequenced Size: | 538 |
Gene | Date | Evidence |
---|---|---|
CG12752 | 2001-12-14 | Blastp of sequenced clone |
CG12752 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12752 | 2003-01-01 | Sim4 clustering to Release 3 |
Nxt1 | 2008-04-29 | Release 5.5 accounting |
Nxt1 | 2008-08-15 | Release 5.9 accounting |
Nxt1 | 2008-12-18 | 5.12 accounting |
538 bp (538 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071250
> RE28995.complete ACTGTAATTCGAGAATCGCGGGAAACATGGACAGCGATTTGAAAGCCAAG GTCGAGAGCTGCGCCCGTACGGCGGATACCTTCACACGCCTGTACTACGC CTCCGTGGACAACCGACGCCAACAAATTGGACGCCTCTATTTGGACAATG CTACGCTTAGCTGGAATGGAAACGGGGCCATCGGCCGCCAGATGATCGAG AGCTACTTTCAGGAGCTGCCATCCTCAAACCACCAGTTGAACACCCTGGA CGCGCAGCCTATTGTGGATCAGGCTGTGTCCAACCAGCTGGCCTACCTCA TCATGGCCAGCGGCTCCGTCAAGTTCGCAGATCAGCAGTTACGCAAATTT CAGCAGACTTTCATCGTTACCGCCGAGAATGATAAATGGAAGGTCGTCTC CGATTGCTACCGAATGCAGGAGGTCTGAGATCCACACACTTGTATTTTAA GCTAAGCTAAAGTTCTTACGTCGTAACGAGTTTATTAACATATCTAAGCT CTTATAAATAGATTGACTTCCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23812523..23812923 | 523..123 | 2005 | 100 | Minus |
2R | 25260384 | 2R | 23812994..23813080 | 122..36 | 435 | 100 | Minus |
2R | 25260384 | 2R | 23813137..23813172 | 36..1 | 165 | 97.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19697425..19697824 | 123..522 | 99 | <- | Minus |
chr2R | 19697895..19697981 | 36..122 | 100 | <- | Minus |
chr2R | 19698039..19698073 | 1..35 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..402 | 27..428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..402 | 27..428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..402 | 27..428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..402 | 27..428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..402 | 27..428 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..522 | 1..522 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..522 | 1..522 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 2..523 | 1..522 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 1..522 | 1..522 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nxt1-RA | 2..523 | 1..522 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23811325..23811724 | 123..522 | 100 | <- | Minus |
2R | 23811795..23811881 | 36..122 | 100 | <- | Minus |
2R | 23811939..23811973 | 1..35 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23811325..23811724 | 123..522 | 100 | <- | Minus |
2R | 23811795..23811881 | 36..122 | 100 | <- | Minus |
2R | 23811939..23811973 | 1..35 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23811325..23811724 | 123..522 | 100 | <- | Minus |
2R | 23811795..23811881 | 36..122 | 100 | <- | Minus |
2R | 23811939..23811973 | 1..35 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19698848..19699247 | 123..522 | 100 | <- | Minus |
arm_2R | 19699318..19699404 | 36..122 | 100 | <- | Minus |
arm_2R | 19699462..19699496 | 1..35 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23812542..23812941 | 123..522 | 100 | <- | Minus |
2R | 23813012..23813098 | 36..122 | 100 | <- | Minus |
2R | 23813156..23813190 | 1..35 | 97 | Minus |
Translation from 2 to 427
> RE28995.hyp SNSRIAGNMDSDLKAKVESCARTADTFTRLYYASVDNRRQQIGRLYLDNA TLSWNGNGAIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLI MASGSVKFADQQLRKFQQTFIVTAENDKWKVVSDCYRMQEV*
Translation from 26 to 427
> RE28995.pep MDSDLKAKVESCARTADTFTRLYYASVDNRRQQIGRLYLDNATLSWNGNG AIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLIMASGSVKF ADQQLRKFQQTFIVTAENDKWKVVSDCYRMQEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12459-PA | 135 | GF12459-PA | 1..132 | 1..132 | 579 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19997-PA | 133 | GG19997-PA | 1..133 | 1..133 | 627 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13218-PA | 134 | GH13218-PA | 1..132 | 1..132 | 511 | 65.9 | Plus |
Dgri\GH24133-PA | 138 | GH24133-PA | 3..134 | 1..132 | 500 | 64.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nxt1-PA | 133 | CG12752-PA | 1..133 | 1..133 | 683 | 100 | Plus |
Nxt1-PB | 48 | CG12752-PB | 1..32 | 1..32 | 163 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16389-PA | 135 | GI16389-PA | 1..132 | 1..132 | 532 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11070-PA | 135 | GL11070-PA | 1..133 | 1..133 | 545 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11789-PA | 135 | GA11789-PA | 1..133 | 1..133 | 545 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15511-PA | 133 | GM15511-PA | 1..133 | 1..133 | 680 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25012-PA | 133 | GD25012-PA | 1..133 | 1..133 | 680 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17007-PA | 135 | GJ17007-PA | 1..132 | 1..132 | 533 | 68.9 | Plus |
Dvir\GJ17006-PA | 135 | GJ17006-PA | 1..132 | 1..132 | 493 | 61.4 | Plus |
Dvir\GJ17005-PA | 135 | GJ17005-PA | 1..132 | 1..132 | 369 | 51.5 | Plus |
Dvir\GJ17003-PA | 133 | GJ17003-PA | 4..132 | 1..130 | 345 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23344-PA | 135 | GK23344-PA | 1..133 | 1..133 | 534 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Nxt1-PA | 133 | GE11531-PA | 1..133 | 1..133 | 635 | 86.5 | Plus |