Clone RE29170 Report

Search the DGRC for RE29170

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:291
Well:70
Vector:pFlc-1
Associated Gene/Transcriptspn-A-RA
Protein status:RE29170.pep: gold
Sequenced Size:1291

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
spn-A 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

RE29170.complete Sequence

1291 bp assembled on 2009-08-05

GenBank Submission: BT089037.1

> RE29170.complete
GCCGTCTTTGTCGAAATTCTCTCACGCAAGACGTGCAATTTAAATAACGA
AACTCGAAACAACAAATAGTCAAATTTAACTTCGAAACTGTCAAATGGAG
AAGCTAACGAATGTTCAGGCACAGCAGGAAGAGGAGGAGGAAGAAGGTCC
ACTCAGCGTGACTAAGTTAATAGGCGGCAGCATCACGGCCAAGGACATCA
AGCTGCTCCAGCAGGCCAGTCTGCACACCGTGGAGTCGGTGGCCAATGCC
ACCAAGAAGCAACTGATGGCCATTCCCGGCTTGGGCGGCGGCAAGGTGGA
GCAGATCATCACGGAGGCTAACAAACTGGTGCCTCTGGGCTTCCTTAGTG
CTCGCACCTTCTATCAAATGCGTGCCGATGTCGTGCAGCTGAGCACGGGC
TCCAAGGAGCTGGATAAACTGCTGGGCGGCGGCATTGAGACGGGATCCAT
TACCGAGATCTTTGGCGAGTTCCGCTGCGGAAAGACCCAATTGTGCCACA
CTCTGGCAGTAACCTGCCAGCTGCCCATCAGCCAGAAGGGCGGCGAGGGC
AAGTGCATGTACATCGACACGGAGAACACCTTCCGTCCGGAGCGTTTGGC
TGCCATCGCGCAAAGGTACAAACTGAATGAATCCGAGGTGCTGGACAATG
TGGCCTTCACCCGTGCCCACAACTCAGATCAGCAGACCAAGCTCATCCAG
ATGGCGGCGGGCATGCTCTTTGAGTCCAGATACGCTTTGCTGATTGTGGA
CAGTGCCATGGCGCTCTACAGATCCGATTATATTGGTCGCGGGGAGCTGG
CCGCCAGGCAAAACCATTTGGGCTTATTTCTGCGCATGCTTCAACGCCTG
GCCGATGAGTTCGGAGTGGCTGTGGTAATTACTAACCAGGTTACTGCCTC
GCTGGACGGCGCACCCGGCATGTTTGATGCCAAGAAGCCCATTGGCGGGC
ACATCATGGCCCACTCCTCAACCACGCGGCTGTATCTGCGCAAGGGTAAA
GGCGAAACCCGCATCTGCAAGATCTACGACTCGCCCTGTTTGCCGGAATC
GGAGGCCATGTTCGCCATTCTGCCGGATGGAATAGGAGACGCCAGGGAGA
GCTAATTGTGCTCACTTATAGGTTAATTAATGCTAGGAATAGAGCTCCCT
AACTTTCTAATGATTACTTATCCCTAGACTAAGAATTAAACTTCGTAGAT
TGTTTTTTTTTTTGTTTTAATGTTTACTTAGAATGTTTAGGATAACGACG
AAATAAAACAGCCGTTGCGAATTGTAAAAAAAAAAAAAAAA

RE29170.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
spn-A-RA 1330 spn-A-RA 52..1324 4..1276 6365 100 Plus
spn-A-RB 1338 spn-A-RB 236..1338 173..1275 5515 100 Plus
spn-A-RB 1338 spn-A-RB 4..173 4..173 850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25877111..25878213 1275..173 5515 100 Minus
chr3R 27901430 chr3R 25878276..25878445 173..4 850 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30054695..30055798 1276..173 5520 100 Minus
3R 32079331 3R 30055861..30056030 173..4 850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29795526..29796629 1276..173 5520 100 Minus
3R 31820162 3R 29796692..29796861 173..4 850 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:09:15 has no hits.

RE29170.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:10:32 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25877111..25878213 173..1275 100 <- Minus
chr3R 25878277..25878448 1..172 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:52 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 1..1011 95..1105 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:36 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 1..1011 95..1105 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:38:51 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 1..1011 95..1105 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:44:37 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 1..1011 95..1105 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 16:42:10 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 13..1287 1..1275 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:35 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 13..1287 1..1275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:38:51 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 5..1279 1..1275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:37 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
spn-A-RA 5..1279 1..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:10:32 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30054696..30055798 173..1275 100 <- Minus
3R 30055862..30056033 1..172 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:10:32 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30054696..30055798 173..1275 100 <- Minus
3R 30055862..30056033 1..172 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:10:32 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30054696..30055798 173..1275 100 <- Minus
3R 30055862..30056033 1..172 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:38:51 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25880418..25881520 173..1275 100 <- Minus
arm_3R 25881584..25881755 1..172 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:07 Download gff for RE29170.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29795527..29796629 173..1275 100 <- Minus
3R 29796693..29796864 1..172 99   Minus

RE29170.hyp Sequence

Translation from 94 to 1104

> RE29170.hyp
MEKLTNVQAQQEEEEEEGPLSVTKLIGGSITAKDIKLLQQASLHTVESVA
NATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQLS
TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG
EGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL
IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQ
RLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRK
GKGETRICKIYDSPCLPESEAMFAILPDGIGDARES*

RE29170.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
spn-A-PA 336 CG7948-PA 1..336 1..336 1697 100 Plus
spn-A-PB 279 CG7948-PB 1..279 58..336 1424 100 Plus
spn-B-PA 341 CG3325-PA 87..328 98..335 185 30.9 Plus
spn-D-PA 270 CG31069-PA 45..267 98..309 171 27.8 Plus

RE29170.pep Sequence

Translation from 94 to 1104

> RE29170.pep
MEKLTNVQAQQEEEEEEGPLSVTKLIGGSITAKDIKLLQQASLHTVESVA
NATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQLS
TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG
EGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL
IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQ
RLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRK
GKGETRICKIYDSPCLPESEAMFAILPDGIGDARES*

RE29170.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16205-PA 334 GF16205-PA 1..334 1..336 1607 88.8 Plus
Dana\GF17509-PA 345 GF17509-PA 72..328 85..333 188 28.2 Plus
Dana\GF23286-PA 234 GF23286-PA 1..213 92..301 175 27.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11967-PA 335 GG11967-PA 1..335 1..336 1752 98.8 Plus
Dere\GG16853-PA 341 GG16853-PA 28..323 30..330 151 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18396-PA 352 GH18396-PA 25..351 12..336 1428 80.4 Plus
Dgri\GH17480-PA 349 GH17480-PA 1..259 4..269 193 28.4 Plus
Dgri\GH22012-PA 348 GH22012-PA 5..259 14..264 189 29.7 Plus
Dgri\GH17957-PA 246 GH17957-PA 3..244 83..310 182 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
spn-A-PA 336 CG7948-PA 1..336 1..336 1697 100 Plus
spn-A-PB 279 CG7948-PB 1..279 58..336 1424 100 Plus
spn-B-PA 341 CG3325-PA 87..328 98..335 185 30.9 Plus
spn-D-PA 270 CG31069-PA 45..267 98..309 171 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23388-PA 347 GI23388-PA 18..345 5..335 1398 78.1 Plus
Dmoj\GI22807-PA 345 GI22807-PA 71..328 84..330 151 28.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13479-PA 335 GL13479-PA 1..333 1..335 1529 85.2 Plus
Dper\GL23505-PA 348 GL23505-PA 71..332 84..332 217 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20711-PA 335 GA20711-PA 1..333 1..335 1529 85.2 Plus
Dpse\GA17378-PA 348 GA17378-PA 71..332 84..332 220 31.6 Plus
Dpse\GA15983-PA 254 GA15983-PA 29..235 98..301 187 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12184-PA 336 GM12184-PA 1..336 1..336 1780 99.7 Plus
Dsec\GM10376-PA 270 GM10376-PA 48..270 101..320 170 29.7 Plus
Dsec\GM24163-PA 341 GM24163-PA 87..323 98..330 155 31.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17366-PA 336 GD17366-PA 1..336 1..336 1776 99.4 Plus
Dsim\GD21329-PA 267 GD21329-PA 48..220 101..267 174 33 Plus
Dsim\GD18959-PA 341 GD18959-PA 28..323 30..330 163 28.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10382-PA 351 GJ10382-PA 24..350 12..336 1424 80.4 Plus
Dvir\GJ16038-PA 245 GJ16038-PA 17..190 99..265 166 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13420-PA 355 GK13420-PA 26..353 10..335 1458 81.4 Plus
Dwil\GK10943-PA 349 GK10943-PA 72..333 84..333 189 30.1 Plus
Dwil\GK13653-PA 269 GK13653-PA 22..156 98..220 161 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23416-PA 335 GE23416-PA 1..335 1..336 1751 98.8 Plus
Dyak\GE23723-PA 406 GE23723-PA 167..403 89..309 187 27.9 Plus
Dyak\GE24233-PA 341 GE24233-PA 28..328 30..335 152 27.3 Plus