BDGP Sequence Production Resources |
Search the DGRC for RE29170
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 291 |
Well: | 70 |
Vector: | pFlc-1 |
Associated Gene/Transcript | spn-A-RA |
Protein status: | RE29170.pep: gold |
Sequenced Size: | 1291 |
Gene | Date | Evidence |
---|---|---|
spn-A | 2009-06-08 | Manual selection by Joe Carlson |
1291 bp assembled on 2009-08-05
GenBank Submission: BT089037.1
> RE29170.complete GCCGTCTTTGTCGAAATTCTCTCACGCAAGACGTGCAATTTAAATAACGA AACTCGAAACAACAAATAGTCAAATTTAACTTCGAAACTGTCAAATGGAG AAGCTAACGAATGTTCAGGCACAGCAGGAAGAGGAGGAGGAAGAAGGTCC ACTCAGCGTGACTAAGTTAATAGGCGGCAGCATCACGGCCAAGGACATCA AGCTGCTCCAGCAGGCCAGTCTGCACACCGTGGAGTCGGTGGCCAATGCC ACCAAGAAGCAACTGATGGCCATTCCCGGCTTGGGCGGCGGCAAGGTGGA GCAGATCATCACGGAGGCTAACAAACTGGTGCCTCTGGGCTTCCTTAGTG CTCGCACCTTCTATCAAATGCGTGCCGATGTCGTGCAGCTGAGCACGGGC TCCAAGGAGCTGGATAAACTGCTGGGCGGCGGCATTGAGACGGGATCCAT TACCGAGATCTTTGGCGAGTTCCGCTGCGGAAAGACCCAATTGTGCCACA CTCTGGCAGTAACCTGCCAGCTGCCCATCAGCCAGAAGGGCGGCGAGGGC AAGTGCATGTACATCGACACGGAGAACACCTTCCGTCCGGAGCGTTTGGC TGCCATCGCGCAAAGGTACAAACTGAATGAATCCGAGGTGCTGGACAATG TGGCCTTCACCCGTGCCCACAACTCAGATCAGCAGACCAAGCTCATCCAG ATGGCGGCGGGCATGCTCTTTGAGTCCAGATACGCTTTGCTGATTGTGGA CAGTGCCATGGCGCTCTACAGATCCGATTATATTGGTCGCGGGGAGCTGG CCGCCAGGCAAAACCATTTGGGCTTATTTCTGCGCATGCTTCAACGCCTG GCCGATGAGTTCGGAGTGGCTGTGGTAATTACTAACCAGGTTACTGCCTC GCTGGACGGCGCACCCGGCATGTTTGATGCCAAGAAGCCCATTGGCGGGC ACATCATGGCCCACTCCTCAACCACGCGGCTGTATCTGCGCAAGGGTAAA GGCGAAACCCGCATCTGCAAGATCTACGACTCGCCCTGTTTGCCGGAATC GGAGGCCATGTTCGCCATTCTGCCGGATGGAATAGGAGACGCCAGGGAGA GCTAATTGTGCTCACTTATAGGTTAATTAATGCTAGGAATAGAGCTCCCT AACTTTCTAATGATTACTTATCCCTAGACTAAGAATTAAACTTCGTAGAT TGTTTTTTTTTTTGTTTTAATGTTTACTTAGAATGTTTAGGATAACGACG AAATAAAACAGCCGTTGCGAATTGTAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25877111..25878213 | 173..1275 | 100 | <- | Minus |
chr3R | 25878277..25878448 | 1..172 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 1..1011 | 95..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 1..1011 | 95..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 1..1011 | 95..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 1..1011 | 95..1105 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 13..1287 | 1..1275 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 13..1287 | 1..1275 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 5..1279 | 1..1275 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spn-A-RA | 5..1279 | 1..1275 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30054696..30055798 | 173..1275 | 100 | <- | Minus |
3R | 30055862..30056033 | 1..172 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30054696..30055798 | 173..1275 | 100 | <- | Minus |
3R | 30055862..30056033 | 1..172 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30054696..30055798 | 173..1275 | 100 | <- | Minus |
3R | 30055862..30056033 | 1..172 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25880418..25881520 | 173..1275 | 100 | <- | Minus |
arm_3R | 25881584..25881755 | 1..172 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29795527..29796629 | 173..1275 | 100 | <- | Minus |
3R | 29796693..29796864 | 1..172 | 99 | Minus |
Translation from 94 to 1104
> RE29170.hyp MEKLTNVQAQQEEEEEEGPLSVTKLIGGSITAKDIKLLQQASLHTVESVA NATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQLS TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG EGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQ RLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRK GKGETRICKIYDSPCLPESEAMFAILPDGIGDARES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spn-A-PA | 336 | CG7948-PA | 1..336 | 1..336 | 1697 | 100 | Plus |
spn-A-PB | 279 | CG7948-PB | 1..279 | 58..336 | 1424 | 100 | Plus |
spn-B-PA | 341 | CG3325-PA | 87..328 | 98..335 | 185 | 30.9 | Plus |
spn-D-PA | 270 | CG31069-PA | 45..267 | 98..309 | 171 | 27.8 | Plus |
Translation from 94 to 1104
> RE29170.pep MEKLTNVQAQQEEEEEEGPLSVTKLIGGSITAKDIKLLQQASLHTVESVA NATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQLS TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG EGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQ RLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRK GKGETRICKIYDSPCLPESEAMFAILPDGIGDARES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16205-PA | 334 | GF16205-PA | 1..334 | 1..336 | 1607 | 88.8 | Plus |
Dana\GF17509-PA | 345 | GF17509-PA | 72..328 | 85..333 | 188 | 28.2 | Plus |
Dana\GF23286-PA | 234 | GF23286-PA | 1..213 | 92..301 | 175 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11967-PA | 335 | GG11967-PA | 1..335 | 1..336 | 1752 | 98.8 | Plus |
Dere\GG16853-PA | 341 | GG16853-PA | 28..323 | 30..330 | 151 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18396-PA | 352 | GH18396-PA | 25..351 | 12..336 | 1428 | 80.4 | Plus |
Dgri\GH17480-PA | 349 | GH17480-PA | 1..259 | 4..269 | 193 | 28.4 | Plus |
Dgri\GH22012-PA | 348 | GH22012-PA | 5..259 | 14..264 | 189 | 29.7 | Plus |
Dgri\GH17957-PA | 246 | GH17957-PA | 3..244 | 83..310 | 182 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spn-A-PA | 336 | CG7948-PA | 1..336 | 1..336 | 1697 | 100 | Plus |
spn-A-PB | 279 | CG7948-PB | 1..279 | 58..336 | 1424 | 100 | Plus |
spn-B-PA | 341 | CG3325-PA | 87..328 | 98..335 | 185 | 30.9 | Plus |
spn-D-PA | 270 | CG31069-PA | 45..267 | 98..309 | 171 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23388-PA | 347 | GI23388-PA | 18..345 | 5..335 | 1398 | 78.1 | Plus |
Dmoj\GI22807-PA | 345 | GI22807-PA | 71..328 | 84..330 | 151 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13479-PA | 335 | GL13479-PA | 1..333 | 1..335 | 1529 | 85.2 | Plus |
Dper\GL23505-PA | 348 | GL23505-PA | 71..332 | 84..332 | 217 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20711-PA | 335 | GA20711-PA | 1..333 | 1..335 | 1529 | 85.2 | Plus |
Dpse\GA17378-PA | 348 | GA17378-PA | 71..332 | 84..332 | 220 | 31.6 | Plus |
Dpse\GA15983-PA | 254 | GA15983-PA | 29..235 | 98..301 | 187 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12184-PA | 336 | GM12184-PA | 1..336 | 1..336 | 1780 | 99.7 | Plus |
Dsec\GM10376-PA | 270 | GM10376-PA | 48..270 | 101..320 | 170 | 29.7 | Plus |
Dsec\GM24163-PA | 341 | GM24163-PA | 87..323 | 98..330 | 155 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17366-PA | 336 | GD17366-PA | 1..336 | 1..336 | 1776 | 99.4 | Plus |
Dsim\GD21329-PA | 267 | GD21329-PA | 48..220 | 101..267 | 174 | 33 | Plus |
Dsim\GD18959-PA | 341 | GD18959-PA | 28..323 | 30..330 | 163 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10382-PA | 351 | GJ10382-PA | 24..350 | 12..336 | 1424 | 80.4 | Plus |
Dvir\GJ16038-PA | 245 | GJ16038-PA | 17..190 | 99..265 | 166 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13420-PA | 355 | GK13420-PA | 26..353 | 10..335 | 1458 | 81.4 | Plus |
Dwil\GK10943-PA | 349 | GK10943-PA | 72..333 | 84..333 | 189 | 30.1 | Plus |
Dwil\GK13653-PA | 269 | GK13653-PA | 22..156 | 98..220 | 161 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23416-PA | 335 | GE23416-PA | 1..335 | 1..336 | 1751 | 98.8 | Plus |
Dyak\GE23723-PA | 406 | GE23723-PA | 167..403 | 89..309 | 187 | 27.9 | Plus |
Dyak\GE24233-PA | 341 | GE24233-PA | 28..328 | 30..335 | 152 | 27.3 | Plus |