Clone RE29207 Report

Search the DGRC for RE29207

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:292
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG5382-RB
Protein status:RE29207.pep: gold
Preliminary Size:1159
Sequenced Size:1183

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5382 2001-12-14 Blastp of sequenced clone
CG5382 2002-01-01 Sim4 clustering to Release 2
CG5382 2003-01-01 Sim4 clustering to Release 3
CG5382 2008-04-29 Release 5.5 accounting
CG5382 2008-08-15 Release 5.9 accounting
CG5382 2008-12-18 5.12 accounting

Clone Sequence Records

RE29207.complete Sequence

1183 bp (1183 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071252

> RE29207.complete
ATGAACAGATACGTGGCTGTTGAATATGTGAATGAAAACTCGAAAATTCC
GACAAAAGCTGCGAAACGAAATAAAATTTAATTTTATTGAGGCGTTATTA
TGCGATAGCTGTCCCAAGGCCGCCAAGTGCAATTCCTCCGCCGCCTTAGG
AACCCCGAATTTAAGGAAATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGT
GACCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTA
TGGTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTG
CGGGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGA
GCAGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACT
GCCTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGT
CACCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGT
CTCCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGG
GCAGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGT
CTGAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACAT
GACCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGC
CCAATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCA
TTTAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCT
GCCCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACC
AGCGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTAT
GCGCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGC
CGGCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGCTGGGTC
GCGGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAATCCACAG
CCGAACCACTACGAATAGGGTGTGCATTCACGGTCGAAATAAGCATACGT
AGCATATAATCGATATCCAAGTCCCCGATTCCGAAAGAATAAAACTTTTA
CAGCTATTTATATAAACAAAAAAAAAAAAAAAA

RE29207.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1251 CG5382-RB 39..1203 1..1165 5825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18188109..18188496 1165..778 1910 99.5 Minus
chr3R 27901430 chr3R 18189250..18189519 270..1 1350 100 Minus
chr3R 27901430 chr3R 18188557..18188763 778..572 1020 99.5 Minus
chr3R 27901430 chr3R 18188814..18189007 576..383 970 100 Minus
chr3R 27901430 chr3R 18189075..18189188 382..269 570 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22364571..22364958 1165..778 1940 100 Minus
3R 32079331 3R 22365712..22365981 270..1 1350 100 Minus
3R 32079331 3R 22365019..22365225 778..572 1020 99.5 Minus
3R 32079331 3R 22365276..22365469 576..383 970 100 Minus
3R 32079331 3R 22365537..22365650 382..269 570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22105402..22105789 1165..778 1940 100 Minus
3R 31820162 3R 22106543..22106812 270..1 1350 100 Minus
3R 31820162 3R 22105850..22106056 778..572 1020 99.5 Minus
3R 31820162 3R 22106107..22106300 576..383 970 100 Minus
3R 31820162 3R 22106368..22106481 382..269 570 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:03:20 has no hits.

RE29207.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:04:15 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18188107..18188495 779..1167 99 <- Minus
chr3R 18188557..18188758 577..778 100 <- Minus
chr3R 18188814..18189007 383..576 100 <- Minus
chr3R 18189075..18189186 271..382 100 <- Minus
chr3R 18189250..18189519 1..270 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:43 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..900 169..1068 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:39 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..900 169..1068 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:46:41 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..900 169..1068 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:12 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..900 169..1068 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:38 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..900 169..1068 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:09:08 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..1166 1..1167 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:39 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..1166 1..1167 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:46:41 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 3..1165 1..1163 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:14 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 1..1166 1..1167 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:38 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 3..1165 1..1163 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:15 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22364569..22364957 779..1167 99 <- Minus
3R 22365019..22365220 577..778 100 <- Minus
3R 22365276..22365469 383..576 100 <- Minus
3R 22365537..22365648 271..382 100 <- Minus
3R 22365712..22365981 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:15 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22364569..22364957 779..1167 99 <- Minus
3R 22365019..22365220 577..778 100 <- Minus
3R 22365276..22365469 383..576 100 <- Minus
3R 22365537..22365648 271..382 100 <- Minus
3R 22365712..22365981 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:15 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22364569..22364957 779..1167 99 <- Minus
3R 22365019..22365220 577..778 100 <- Minus
3R 22365276..22365469 383..576 100 <- Minus
3R 22365537..22365648 271..382 100 <- Minus
3R 22365712..22365981 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:46:41 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18191259..18191370 271..382 100 <- Minus
arm_3R 18190291..18190679 779..1167 99 <- Minus
arm_3R 18190741..18190942 577..778 100 <- Minus
arm_3R 18190998..18191191 383..576 100 <- Minus
arm_3R 18191434..18191703 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:21:12 Download gff for RE29207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22105850..22106051 577..778 100 <- Minus
3R 22106107..22106300 383..576 100 <- Minus
3R 22106368..22106479 271..382 100 <- Minus
3R 22105400..22105788 779..1167 99 <- Minus
3R 22106543..22106812 1..270 100   Minus

RE29207.pep Sequence

Translation from 168 to 1067

> RE29207.pep
MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI
SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC
SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP
KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA
GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP
PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYE*

RE29207.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16938-PA 301 GF16938-PA 1..301 1..299 1487 91.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12524-PA 298 GG12524-PA 1..298 1..299 1590 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19711-PA 301 GH19711-PA 1..301 1..299 1318 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 299 CG5382-PB 1..299 1..299 1646 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22279-PA 299 GI22279-PA 1..299 1..299 1351 83.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24168-PA 302 GL24168-PA 1..302 1..299 1453 88.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18838-PA 302 GA18838-PA 1..302 1..299 1453 88.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23659-PA 299 GM23659-PA 1..299 1..299 1604 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18468-PA 299 GD18468-PA 1..299 1..299 1613 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24073-PA 300 GJ24073-PA 1..300 1..299 1333 81.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14252-PA 301 GK14252-PA 1..301 1..299 1381 85.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24048-PA 299 GE24048-PA 1..299 1..299 1584 98.3 Plus

RE29207.hyp Sequence

Translation from 168 to 1067

> RE29207.hyp
MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI
SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC
SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP
KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA
GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP
PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYE*

RE29207.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 299 CG5382-PB 1..299 1..299 1646 100 Plus