BDGP Sequence Production Resources |
Search the DGRC for RE29207
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 292 |
Well: | 7 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5382-RB |
Protein status: | RE29207.pep: gold |
Preliminary Size: | 1159 |
Sequenced Size: | 1183 |
Gene | Date | Evidence |
---|---|---|
CG5382 | 2001-12-14 | Blastp of sequenced clone |
CG5382 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5382 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5382 | 2008-04-29 | Release 5.5 accounting |
CG5382 | 2008-08-15 | Release 5.9 accounting |
CG5382 | 2008-12-18 | 5.12 accounting |
1183 bp (1183 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071252
> RE29207.complete ATGAACAGATACGTGGCTGTTGAATATGTGAATGAAAACTCGAAAATTCC GACAAAAGCTGCGAAACGAAATAAAATTTAATTTTATTGAGGCGTTATTA TGCGATAGCTGTCCCAAGGCCGCCAAGTGCAATTCCTCCGCCGCCTTAGG AACCCCGAATTTAAGGAAATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGT GACCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTA TGGTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTG CGGGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGA GCAGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACT GCCTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGT CACCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGT CTCCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGG GCAGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGT CTGAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACAT GACCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGC CCAATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCA TTTAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCT GCCCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACC AGCGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTAT GCGCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGC CGGCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGCTGGGTC GCGGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAATCCACAG CCGAACCACTACGAATAGGGTGTGCATTCACGGTCGAAATAAGCATACGT AGCATATAATCGATATCCAAGTCCCCGATTCCGAAAGAATAAAACTTTTA CAGCTATTTATATAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5382-RB | 1251 | CG5382-RB | 39..1203 | 1..1165 | 5825 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18188109..18188496 | 1165..778 | 1910 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 18189250..18189519 | 270..1 | 1350 | 100 | Minus |
chr3R | 27901430 | chr3R | 18188557..18188763 | 778..572 | 1020 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 18188814..18189007 | 576..383 | 970 | 100 | Minus |
chr3R | 27901430 | chr3R | 18189075..18189188 | 382..269 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22364571..22364958 | 1165..778 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 22365712..22365981 | 270..1 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 22365019..22365225 | 778..572 | 1020 | 99.5 | Minus |
3R | 32079331 | 3R | 22365276..22365469 | 576..383 | 970 | 100 | Minus |
3R | 32079331 | 3R | 22365537..22365650 | 382..269 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22105402..22105789 | 1165..778 | 1940 | 100 | Minus |
3R | 31820162 | 3R | 22106543..22106812 | 270..1 | 1350 | 100 | Minus |
3R | 31820162 | 3R | 22105850..22106056 | 778..572 | 1020 | 99.5 | Minus |
3R | 31820162 | 3R | 22106107..22106300 | 576..383 | 970 | 100 | Minus |
3R | 31820162 | 3R | 22106368..22106481 | 382..269 | 570 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18188107..18188495 | 779..1167 | 99 | <- | Minus |
chr3R | 18188557..18188758 | 577..778 | 100 | <- | Minus |
chr3R | 18188814..18189007 | 383..576 | 100 | <- | Minus |
chr3R | 18189075..18189186 | 271..382 | 100 | <- | Minus |
chr3R | 18189250..18189519 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..900 | 169..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..900 | 169..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..900 | 169..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..900 | 169..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..900 | 169..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..1166 | 1..1167 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..1166 | 1..1167 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 3..1165 | 1..1163 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 1..1166 | 1..1167 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5382-RB | 3..1165 | 1..1163 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22364569..22364957 | 779..1167 | 99 | <- | Minus |
3R | 22365019..22365220 | 577..778 | 100 | <- | Minus |
3R | 22365276..22365469 | 383..576 | 100 | <- | Minus |
3R | 22365537..22365648 | 271..382 | 100 | <- | Minus |
3R | 22365712..22365981 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22364569..22364957 | 779..1167 | 99 | <- | Minus |
3R | 22365019..22365220 | 577..778 | 100 | <- | Minus |
3R | 22365276..22365469 | 383..576 | 100 | <- | Minus |
3R | 22365537..22365648 | 271..382 | 100 | <- | Minus |
3R | 22365712..22365981 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22364569..22364957 | 779..1167 | 99 | <- | Minus |
3R | 22365019..22365220 | 577..778 | 100 | <- | Minus |
3R | 22365276..22365469 | 383..576 | 100 | <- | Minus |
3R | 22365537..22365648 | 271..382 | 100 | <- | Minus |
3R | 22365712..22365981 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18191259..18191370 | 271..382 | 100 | <- | Minus |
arm_3R | 18190291..18190679 | 779..1167 | 99 | <- | Minus |
arm_3R | 18190741..18190942 | 577..778 | 100 | <- | Minus |
arm_3R | 18190998..18191191 | 383..576 | 100 | <- | Minus |
arm_3R | 18191434..18191703 | 1..270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22105850..22106051 | 577..778 | 100 | <- | Minus |
3R | 22106107..22106300 | 383..576 | 100 | <- | Minus |
3R | 22106368..22106479 | 271..382 | 100 | <- | Minus |
3R | 22105400..22105788 | 779..1167 | 99 | <- | Minus |
3R | 22106543..22106812 | 1..270 | 100 | Minus |
Translation from 168 to 1067
> RE29207.pep MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16938-PA | 301 | GF16938-PA | 1..301 | 1..299 | 1487 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12524-PA | 298 | GG12524-PA | 1..298 | 1..299 | 1590 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19711-PA | 301 | GH19711-PA | 1..301 | 1..299 | 1318 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5382-PB | 299 | CG5382-PB | 1..299 | 1..299 | 1646 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22279-PA | 299 | GI22279-PA | 1..299 | 1..299 | 1351 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24168-PA | 302 | GL24168-PA | 1..302 | 1..299 | 1453 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18838-PA | 302 | GA18838-PA | 1..302 | 1..299 | 1453 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23659-PA | 299 | GM23659-PA | 1..299 | 1..299 | 1604 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18468-PA | 299 | GD18468-PA | 1..299 | 1..299 | 1613 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24073-PA | 300 | GJ24073-PA | 1..300 | 1..299 | 1333 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14252-PA | 301 | GK14252-PA | 1..301 | 1..299 | 1381 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24048-PA | 299 | GE24048-PA | 1..299 | 1..299 | 1584 | 98.3 | Plus |
Translation from 168 to 1067
> RE29207.hyp MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5382-PB | 299 | CG5382-PB | 1..299 | 1..299 | 1646 | 100 | Plus |