BDGP Sequence Production Resources |
Search the DGRC for RE29468
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 294 |
Well: | 68 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42258-RD |
Protein status: | RE29468.pep: gold |
Preliminary Size: | 681 |
Sequenced Size: | 1815 |
Gene | Date | Evidence |
---|---|---|
CG15926 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15926 | 2002-04-09 | Blastp of sequenced clone |
CG15926 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15926 | 2008-04-29 | Release 5.5 accounting |
CG42258 | 2008-08-15 | Release 5.9 accounting |
CG42258 | 2008-12-18 | 5.12 accounting |
1815 bp (1815 high quality bases) assembled on 2002-04-09
GenBank Submission: AY095200
> RE29468.complete AGTTCAGTTTTTCAGTTTAGGCAGCAACAACGCAAAAGTCCGAAGAGCCT CCAAACAAAAAAAGAGCGCTCACCTCACACAAAAAATAAAAGCACAAAAA CCCAAAAAACCGAAACGAAAGAAAATTACGCGCTCATCAATAGTTGCTGC TGCTACTTCCCGCTCTTCGGCTATTTTTTTTAATTCGCAAAAGGATCAAA GAAGAGAGCGAGTGGAAAACGCGCGTAGAATTACCCTAAAAATCGGAGCG TTCGATAGTGCGCGTTTCAATCTACAACAGCAGCCAGCCGCAAGTAATCT GTCCACCGGCGGAGTATCTGGACTTTCCGGAGTTCAACTACAGCAGCAAC CTCTTAGACTATAATACGATGGCCACGACGGCGGCGGGGATCCAACAGCA GCAGGTGATTGGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATT CCGGCTGGGACAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCT GATGAAATTGTCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGA GGAGCGTACAATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCA ACGGCGGTACGGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAG AATCTAGCAACAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGC CGACGCTGGCGCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAA CCGGAAACAATGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTT CCCGGACCGACGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAA GAAGAAGGGCTGCTGTGTCCTTCAATAATTGGGGCAAATAGCGGGGGACG CGATGAGCAGATTTGTGGGGTAGGGGGGGAGGGGCGGTCATTTTCCTGCT AGCCCTGTTTTTTGATGTTAATGTTTTTTTGGACGAAATGGAGCCAAGCT GTTAATATATTTCATGCCGCATAAATCGCTTTGCTTCGCTTTGCAAGAGG AGACCAAAACCGATACCAGAGATTGAGATTCAGACAACACAAGAATGAAC TAGAGGAACATTAGGAAAACCAAGCTCTCTGACCAACAGCAGCCACAGTG AGAACCAACATTTATGCAACACCCTGCAGCGGTTGCTCCAGCTTCGAAGC ATAAGTCGATGAACACTTCAACATTTGAATTGTAAACCCGAAGGCCGCAC TTATATATGTTTATATATATATATATTTATATATATATATGATATATATA TATCTGTTTGTCTGCAGGCGATGCTATATTGCAATTCACCATTATTATAT ATATATATATATTATTTTTTTCCCCCTTTTTCTGTAATGTGACTCGACCT GCATATGTGTATTATAAAAATTATTGTATGCATATATGTGAATTTATTTT TTTTTTTTTTGTAATTGTAAAATTTAGTGCGGCTTTTTTAAAAAATGAAA AGGATGTAGGGACGTTTAACAAGTAAAAACTAAAAGAACAAAAAAATAAC GAAAAACGTTTTGCTTGCATGCATAATGGATACAAAATCGAAAAAAAAAA TTTAACATAAAGAATAATGTATTTATTTTTATTTATATGATGACGATGAA GCAGATGAAAGTAAATTAAATGTTAAACCTTAAAACAAATATACACACAC ACACACGTACATATACAAATACACACACACACATACGCATATATACTATA CGATATATGAGATGAAATGAATGACGCAATAAAGCAAAACGAGATGAACC GGAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42258.i | 2851 | CG42258.i | 42..1846 | 1..1805 | 8995 | 99.8 | Plus |
CG42258-RD | 1892 | CG42258-RD | 42..1846 | 1..1805 | 8995 | 99.8 | Plus |
CG42258.d | 1855 | CG42258.d | 686..1849 | 642..1805 | 5790 | 99.8 | Plus |
CG42258.d | 1855 | CG42258.d | 264..667 | 238..641 | 2020 | 100 | Plus |
CG42258.d | 1855 | CG42258.d | 1..241 | 1..241 | 1205 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 12367306..12368466 | 642..1802 | 5775 | 99.8 | Plus |
chrX | 22417052 | chrX | 12362637..12362876 | 1..241 | 1140 | 99.2 | Plus |
chrX | 22417052 | chrX | 12366611..12366811 | 242..442 | 1005 | 100 | Plus |
chrX | 22417052 | chrX | 12367120..12367237 | 524..641 | 590 | 100 | Plus |
chrX | 22417052 | chrX | 12366884..12366970 | 441..527 | 435 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 12476337..12477500 | 642..1805 | 5790 | 99.8 | Plus |
X | 23542271 | X | 12471668..12471908 | 1..241 | 1205 | 100 | Plus |
X | 23542271 | X | 12475640..12475840 | 242..442 | 1005 | 100 | Plus |
X | 23542271 | X | 12476151..12476268 | 524..641 | 590 | 100 | Plus |
X | 23542271 | X | 12475913..12475999 | 441..527 | 435 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 12484435..12485598 | 642..1805 | 5790 | 99.8 | Plus |
X | 23527363 | X | 12479766..12480006 | 1..241 | 1205 | 100 | Plus |
X | 23527363 | X | 12483738..12483938 | 242..442 | 1005 | 100 | Plus |
X | 23527363 | X | 12484249..12484366 | 524..641 | 590 | 100 | Plus |
X | 23527363 | X | 12484011..12484097 | 441..527 | 435 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1467..1717 | 1520..1788 | 122 | 56.4 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1604..1698 | 1495..1403 | 119 | 64.3 | Minus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1362..1435 | 1660..1591 | 117 | 66.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 12362637..12362876 | 1..241 | 99 | -> | Plus |
chrX | 12366611..12366811 | 242..442 | 100 | -> | Plus |
chrX | 12366886..12366968 | 443..525 | 100 | -> | Plus |
chrX | 12367122..12367237 | 526..641 | 100 | -> | Plus |
chrX | 12367306..12367915 | 642..1251 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RC | 758..1398 | 238..878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RC | 758..1398 | 238..878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RC | 758..1398 | 238..878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RC | 758..1398 | 238..878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RC | 758..1398 | 238..878 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RD | 1..1802 | 1..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RD | 1..1802 | 1..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RD | 1..1802 | 1..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RD | 1..1802 | 1..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42258-RD | 5..1806 | 1..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12471668..12471908 | 1..241 | 100 | -> | Plus |
X | 12475640..12475840 | 242..442 | 100 | -> | Plus |
X | 12475915..12475997 | 443..525 | 100 | -> | Plus |
X | 12476153..12476268 | 526..641 | 100 | -> | Plus |
X | 12476337..12477497 | 642..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12471668..12471908 | 1..241 | 100 | -> | Plus |
X | 12475640..12475840 | 242..442 | 100 | -> | Plus |
X | 12475915..12475997 | 443..525 | 100 | -> | Plus |
X | 12476153..12476268 | 526..641 | 100 | -> | Plus |
X | 12476337..12477497 | 642..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12471668..12471908 | 1..241 | 100 | -> | Plus |
X | 12475640..12475840 | 242..442 | 100 | -> | Plus |
X | 12475915..12475997 | 443..525 | 100 | -> | Plus |
X | 12476153..12476268 | 526..641 | 100 | -> | Plus |
X | 12476337..12477497 | 642..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 12370186..12370301 | 526..641 | 100 | -> | Plus |
arm_X | 12365701..12365941 | 1..241 | 100 | -> | Plus |
arm_X | 12369673..12369873 | 242..442 | 100 | -> | Plus |
arm_X | 12369948..12370030 | 443..525 | 100 | -> | Plus |
arm_X | 12370370..12371530 | 642..1802 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12479766..12480006 | 1..241 | 100 | -> | Plus |
X | 12483738..12483938 | 242..442 | 100 | -> | Plus |
X | 12484013..12484095 | 443..525 | 100 | -> | Plus |
X | 12484251..12484366 | 526..641 | 100 | -> | Plus |
X | 12484435..12485595 | 642..1802 | 99 | Plus |
Translation from 368 to 877
> RE29468.pep MATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGGDLSREADEIVNM IRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNLATAQ NGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSA SHVVIDEKKNKKKGCCVLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19396-PA | 162 | GF19396-PA | 1..162 | 8..169 | 650 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17722-PA | 248 | GG17722-PA | 80..248 | 1..169 | 862 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24124-PA | 171 | GH24124-PA | 7..171 | 11..169 | 610 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42258-PF | 169 | CG42258-PF | 1..169 | 1..169 | 871 | 100 | Plus |
CG42258-PD | 169 | CG15926-PA | 1..169 | 1..169 | 871 | 100 | Plus |
CG42258-PC | 465 | CG42258-PC | 297..465 | 1..169 | 871 | 100 | Plus |
CG42258-PE | 175 | CG42258-PE | 1..175 | 1..169 | 854 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16382-PA | 166 | GI16382-PA | 2..166 | 11..169 | 620 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25276-PA | 153 | GL25276-PA | 1..140 | 1..137 | 528 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14032-PA | 172 | GA14032-PA | 1..172 | 1..169 | 703 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11566-PA | 169 | GM11566-PA | 1..169 | 1..169 | 864 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17080-PA | 169 | GD17080-PA | 1..169 | 1..169 | 877 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16754-PA | 171 | GJ16754-PA | 11..171 | 15..169 | 609 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16497-PA | 169 | GK16497-PA | 7..169 | 11..169 | 676 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17011-PA | 171 | GE17011-PA | 1..171 | 1..169 | 845 | 97.1 | Plus |
Translation from 368 to 877
> RE29468.hyp MATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGGDLSREADEIVNM IRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNLATAQ NGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSA SHVVIDEKKNKKKGCCVLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42258-PF | 169 | CG42258-PF | 1..169 | 1..169 | 871 | 100 | Plus |
CG42258-PD | 169 | CG15926-PA | 1..169 | 1..169 | 871 | 100 | Plus |
CG42258-PC | 465 | CG42258-PC | 297..465 | 1..169 | 871 | 100 | Plus |
CG42258-PE | 175 | CG42258-PE | 1..175 | 1..169 | 854 | 96.6 | Plus |