Clone RE29468 Report

Search the DGRC for RE29468

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:294
Well:68
Vector:pFlc-1
Associated Gene/TranscriptCG42258-RD
Protein status:RE29468.pep: gold
Preliminary Size:681
Sequenced Size:1815

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15926 2002-01-01 Sim4 clustering to Release 2
CG15926 2002-04-09 Blastp of sequenced clone
CG15926 2003-01-01 Sim4 clustering to Release 3
CG15926 2008-04-29 Release 5.5 accounting
CG42258 2008-08-15 Release 5.9 accounting
CG42258 2008-12-18 5.12 accounting

Clone Sequence Records

RE29468.complete Sequence

1815 bp (1815 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095200

> RE29468.complete
AGTTCAGTTTTTCAGTTTAGGCAGCAACAACGCAAAAGTCCGAAGAGCCT
CCAAACAAAAAAAGAGCGCTCACCTCACACAAAAAATAAAAGCACAAAAA
CCCAAAAAACCGAAACGAAAGAAAATTACGCGCTCATCAATAGTTGCTGC
TGCTACTTCCCGCTCTTCGGCTATTTTTTTTAATTCGCAAAAGGATCAAA
GAAGAGAGCGAGTGGAAAACGCGCGTAGAATTACCCTAAAAATCGGAGCG
TTCGATAGTGCGCGTTTCAATCTACAACAGCAGCCAGCCGCAAGTAATCT
GTCCACCGGCGGAGTATCTGGACTTTCCGGAGTTCAACTACAGCAGCAAC
CTCTTAGACTATAATACGATGGCCACGACGGCGGCGGGGATCCAACAGCA
GCAGGTGATTGGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATT
CCGGCTGGGACAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCT
GATGAAATTGTCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGA
GGAGCGTACAATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCA
ACGGCGGTACGGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAG
AATCTAGCAACAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGC
CGACGCTGGCGCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAA
CCGGAAACAATGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTT
CCCGGACCGACGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAA
GAAGAAGGGCTGCTGTGTCCTTCAATAATTGGGGCAAATAGCGGGGGACG
CGATGAGCAGATTTGTGGGGTAGGGGGGGAGGGGCGGTCATTTTCCTGCT
AGCCCTGTTTTTTGATGTTAATGTTTTTTTGGACGAAATGGAGCCAAGCT
GTTAATATATTTCATGCCGCATAAATCGCTTTGCTTCGCTTTGCAAGAGG
AGACCAAAACCGATACCAGAGATTGAGATTCAGACAACACAAGAATGAAC
TAGAGGAACATTAGGAAAACCAAGCTCTCTGACCAACAGCAGCCACAGTG
AGAACCAACATTTATGCAACACCCTGCAGCGGTTGCTCCAGCTTCGAAGC
ATAAGTCGATGAACACTTCAACATTTGAATTGTAAACCCGAAGGCCGCAC
TTATATATGTTTATATATATATATATTTATATATATATATGATATATATA
TATCTGTTTGTCTGCAGGCGATGCTATATTGCAATTCACCATTATTATAT
ATATATATATATTATTTTTTTCCCCCTTTTTCTGTAATGTGACTCGACCT
GCATATGTGTATTATAAAAATTATTGTATGCATATATGTGAATTTATTTT
TTTTTTTTTTGTAATTGTAAAATTTAGTGCGGCTTTTTTAAAAAATGAAA
AGGATGTAGGGACGTTTAACAAGTAAAAACTAAAAGAACAAAAAAATAAC
GAAAAACGTTTTGCTTGCATGCATAATGGATACAAAATCGAAAAAAAAAA
TTTAACATAAAGAATAATGTATTTATTTTTATTTATATGATGACGATGAA
GCAGATGAAAGTAAATTAAATGTTAAACCTTAAAACAAATATACACACAC
ACACACGTACATATACAAATACACACACACACATACGCATATATACTATA
CGATATATGAGATGAAATGAATGACGCAATAAAGCAAAACGAGATGAACC
GGAAAAAAAAAAAAA

RE29468.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258.i 2851 CG42258.i 42..1846 1..1805 8995 99.8 Plus
CG42258-RD 1892 CG42258-RD 42..1846 1..1805 8995 99.8 Plus
CG42258.d 1855 CG42258.d 686..1849 642..1805 5790 99.8 Plus
CG42258.d 1855 CG42258.d 264..667 238..641 2020 100 Plus
CG42258.d 1855 CG42258.d 1..241 1..241 1205 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12367306..12368466 642..1802 5775 99.8 Plus
chrX 22417052 chrX 12362637..12362876 1..241 1140 99.2 Plus
chrX 22417052 chrX 12366611..12366811 242..442 1005 100 Plus
chrX 22417052 chrX 12367120..12367237 524..641 590 100 Plus
chrX 22417052 chrX 12366884..12366970 441..527 435 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12476337..12477500 642..1805 5790 99.8 Plus
X 23542271 X 12471668..12471908 1..241 1205 100 Plus
X 23542271 X 12475640..12475840 242..442 1005 100 Plus
X 23542271 X 12476151..12476268 524..641 590 100 Plus
X 23542271 X 12475913..12475999 441..527 435 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12484435..12485598 642..1805 5790 99.8 Plus
X 23527363 X 12479766..12480006 1..241 1205 100 Plus
X 23527363 X 12483738..12483938 242..442 1005 100 Plus
X 23527363 X 12484249..12484366 524..641 590 100 Plus
X 23527363 X 12484011..12484097 441..527 435 100 Plus
Blast to na_te.dros performed 2019-03-16 21:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1467..1717 1520..1788 122 56.4 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1604..1698 1495..1403 119 64.3 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1362..1435 1660..1591 117 66.2 Minus

RE29468.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:08:52 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12362637..12362876 1..241 99 -> Plus
chrX 12366611..12366811 242..442 100 -> Plus
chrX 12366886..12366968 443..525 100 -> Plus
chrX 12367122..12367237 526..641 100 -> Plus
chrX 12367306..12367915 642..1251 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:54 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 758..1398 238..878 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:09:34 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 758..1398 238..878 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:10 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 758..1398 238..878 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:03 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 758..1398 238..878 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:47 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 758..1398 238..878 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:44 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RD 1..1802 1..1802 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:09:34 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RD 1..1802 1..1802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:10 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RD 1..1802 1..1802 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:03 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RD 1..1802 1..1802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:47 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RD 5..1806 1..1802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:52 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
X 12471668..12471908 1..241 100 -> Plus
X 12475640..12475840 242..442 100 -> Plus
X 12475915..12475997 443..525 100 -> Plus
X 12476153..12476268 526..641 100 -> Plus
X 12476337..12477497 642..1802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:52 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
X 12471668..12471908 1..241 100 -> Plus
X 12475640..12475840 242..442 100 -> Plus
X 12475915..12475997 443..525 100 -> Plus
X 12476153..12476268 526..641 100 -> Plus
X 12476337..12477497 642..1802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:52 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
X 12471668..12471908 1..241 100 -> Plus
X 12475640..12475840 242..442 100 -> Plus
X 12475915..12475997 443..525 100 -> Plus
X 12476153..12476268 526..641 100 -> Plus
X 12476337..12477497 642..1802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:10 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12370186..12370301 526..641 100 -> Plus
arm_X 12365701..12365941 1..241 100 -> Plus
arm_X 12369673..12369873 242..442 100 -> Plus
arm_X 12369948..12370030 443..525 100 -> Plus
arm_X 12370370..12371530 642..1802 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:26 Download gff for RE29468.complete
Subject Subject Range Query Range Percent Splice Strand
X 12479766..12480006 1..241 100 -> Plus
X 12483738..12483938 242..442 100 -> Plus
X 12484013..12484095 443..525 100 -> Plus
X 12484251..12484366 526..641 100 -> Plus
X 12484435..12485595 642..1802 99   Plus

RE29468.pep Sequence

Translation from 368 to 877

> RE29468.pep
MATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGGDLSREADEIVNM
IRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNLATAQ
NGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSA
SHVVIDEKKNKKKGCCVLQ*

RE29468.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19396-PA 162 GF19396-PA 1..162 8..169 650 82.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17722-PA 248 GG17722-PA 80..248 1..169 862 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24124-PA 171 GH24124-PA 7..171 11..169 610 75.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-PF 169 CG42258-PF 1..169 1..169 871 100 Plus
CG42258-PD 169 CG15926-PA 1..169 1..169 871 100 Plus
CG42258-PC 465 CG42258-PC 297..465 1..169 871 100 Plus
CG42258-PE 175 CG42258-PE 1..175 1..169 854 96.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16382-PA 166 GI16382-PA 2..166 11..169 620 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25276-PA 153 GL25276-PA 1..140 1..137 528 77.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14032-PA 172 GA14032-PA 1..172 1..169 703 81.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11566-PA 169 GM11566-PA 1..169 1..169 864 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17080-PA 169 GD17080-PA 1..169 1..169 877 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16754-PA 171 GJ16754-PA 11..171 15..169 609 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16497-PA 169 GK16497-PA 7..169 11..169 676 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17011-PA 171 GE17011-PA 1..171 1..169 845 97.1 Plus

RE29468.hyp Sequence

Translation from 368 to 877

> RE29468.hyp
MATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGGDLSREADEIVNM
IRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNLATAQ
NGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSA
SHVVIDEKKNKKKGCCVLQ*

RE29468.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-PF 169 CG42258-PF 1..169 1..169 871 100 Plus
CG42258-PD 169 CG15926-PA 1..169 1..169 871 100 Plus
CG42258-PC 465 CG42258-PC 297..465 1..169 871 100 Plus
CG42258-PE 175 CG42258-PE 1..175 1..169 854 96.6 Plus