Clone RE29488 Report

Search the DGRC for RE29488

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:294
Well:88
Vector:pFlc-1
Associated Gene/TranscriptCG11905-RC
Protein status:RE29488.pep: gold
Preliminary Size:2232
Sequenced Size:1369

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11905 2003-01-01 Sim4 clustering to Release 3
CG11905 2003-02-13 Blastp of sequenced clone
CG11905 2008-04-29 Release 5.5 accounting
CG11905 2008-08-15 Release 5.9 accounting
CG11905 2008-12-18 5.12 accounting

Clone Sequence Records

RE29488.complete Sequence

1369 bp (1369 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003767

> RE29488.complete
AGTTCATCTTCAGACGTCGCCTGGCTCGCTGGCTCTTGGTTCTTGTTCAA
GGATATATTGTCAAGGCGAGGATTGGTCAACGCCACGAACACCAAGCATT
TATTGAAAAATCTGAAACTATTCACCAGAACCTCGCGTTAAAATGCGCTT
TCTTGTTCTCTCAACACTGCTTCTGGCCTCTTTGGCACTTGGCCAGGCTC
AACAGCACGGTGGACTGGCCGTCGATGCCTACTGGCGCACAACCAATATC
GAGGCCTGGCCACCAGGAGCACCCGTCGCAGAGAAGTCCGGAAAACTCAT
TGCAGGATCTGCTCCGGCCCAGGACCTCACGCCCTATGGAGCCTATCAAC
CCGTGCTGTTCAGTGCCCCATACTACGCCGCCTACAATCTGCCCCTGGCC
TATGTGGTGCAACCCACCATCGCCAGTGCCGATCAAGCCACCATAGCCAG
TGCAACAACCACAACGACCACTACCACAACTGGCCGACCCGAAAGCTTAG
CTGATGACAGCTCCAGCGAGTTGGAGAAACCAGAAAAGCTACAGGCTCTG
CCTGCAGTGAAGACCCGAACCACTGGGGATCTGAAGAGTGATGTGGGTCT
CCGCTCAGCGGTCAGCAAAATAAACCCCGAGTATGTGATCGAAGAGATCG
TTCCGGTGCCGGGCAAGCTAGTGATCTCCACTTCTGGGTCACCCCGCTCC
GCCAAGCAGCAGTTGAAGAAGGCGATTGCCCCACAAAAAATGAGAAAGCA
GGCGGGTGGAAGAGTTCCCTTGAAGGTTGAGGCCACCGGAAAGACCAGCA
CGAGTTCCGGCAACTTTCCGCAGATCCCATTTGGAAACTACTTCCTGCCC
TATAGACCGGAGCAGGCTCAGGCGATCCAGGGACGCAAGCAGGCTGCACT
CATCCTGGAACCTCATTCCAAAGCGGTGGTTGGTAATGGTGGCACTGCCA
TATCCACGCCCATTTCCAAGGCGTATCTGAAGAAGGGTGTACCCACCAAC
GTTTACTTCAATCCGGAATCTGTGGCCATAGCAGGTGTGGGTGGCAAGGC
GCATGCTACGGCGGATTTGGAATTGGATCTGTTCACGTAAAGGAGCAAGG
ATTTAACTTAAAGCTCACTTTCATTAACTGATTACTTGGCATTATTTTGA
AAGTCAATTGACACAGTACGCAAAACACGCAAAGACAATTTTCCTATGAA
ATCAGTTGCTGAAAATGGGCTCTATGTAGTAGGTTACCCAACAGAATCTA
ATTGGTAGTTCCTCCTCCCAACTGACCTATGTTCCTATGTTAAGAACATA
GGCCTATCTGATGTGTCATTTCTTAGATTGTAAATAAAGTAAACCGTAAA
CTGAAAAAAAAAAAAAAAA

RE29488.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RC 1517 CG11905-RC 10..1362 1..1353 6765 100 Plus
CG11905-RE 1549 CG11905-RE 218..1526 45..1353 6545 100 Plus
CG11905-RH 1608 CG11905-RH 169..1476 46..1353 6540 100 Plus
CG11905-RH 1608 CG11905-RH 1..45 1..45 225 100 Plus
CG11905-RE 1549 CG11905-RE 1..36 10..45 180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16919295..16920422 1353..226 5415 98.7 Minus
chr3L 24539361 chr3L 16924645..16924757 157..45 550 99.1 Minus
chr3L 24539361 chr3L 16922748..16922815 225..158 340 100 Minus
chr3L 24539361 chr3L 16924933..16924977 45..1 225 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16929854..16930981 1353..226 5640 100 Minus
3L 28110227 3L 16935194..16935306 157..45 565 100 Minus
3L 28110227 3L 16933293..16933360 225..158 340 100 Minus
3L 28110227 3L 16935488..16935532 45..1 225 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16922954..16924081 1353..226 5640 100 Minus
3L 28103327 3L 16928294..16928406 157..45 565 100 Minus
3L 28103327 3L 16926393..16926460 225..158 340 100 Minus
3L 28103327 3L 16928588..16928632 45..1 225 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:52:27 has no hits.

RE29488.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:53:17 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16919295..16920422 226..1353 98 <- Minus
chr3L 16922748..16922815 158..225 100 <- Minus
chr3L 16924645..16924756 46..157 99 <- Minus
chr3L 16924933..16924977 1..45 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:57 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RH 1..948 143..1090 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:20 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RH 1..948 143..1090 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:10:27 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 1..948 143..1090 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:26 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RH 1..948 143..1090 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:44:01 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 1..948 143..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:17 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 1..1353 1..1353 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:20 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 1..1353 1..1353 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:10:27 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 5..1357 1..1353 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:26 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 1..1353 1..1353 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:44:01 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RC 5..1357 1..1353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:17 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16929854..16930981 226..1353 100 <- Minus
3L 16933293..16933360 158..225 100 <- Minus
3L 16935194..16935305 46..157 100 <- Minus
3L 16935488..16935532 1..45 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:17 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16929854..16930981 226..1353 100 <- Minus
3L 16933293..16933360 158..225 100 <- Minus
3L 16935194..16935305 46..157 100 <- Minus
3L 16935488..16935532 1..45 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:17 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16929854..16930981 226..1353 100 <- Minus
3L 16933293..16933360 158..225 100 <- Minus
3L 16935194..16935305 46..157 100 <- Minus
3L 16935488..16935532 1..45 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:10:27 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16922954..16924081 226..1353 100 <- Minus
arm_3L 16926393..16926460 158..225 100 <- Minus
arm_3L 16928294..16928405 46..157 100 <- Minus
arm_3L 16928588..16928632 1..45 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:15 Download gff for RE29488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16922954..16924081 226..1353 100 <- Minus
3L 16926393..16926460 158..225 100 <- Minus
3L 16928294..16928405 46..157 100 <- Minus
3L 16928588..16928632 1..45 100   Minus

RE29488.pep Sequence

Translation from 142 to 1089

> RE29488.pep
MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG
KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT
IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD
VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM
RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ
AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG
GKAHATADLELDLFT*

RE29488.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10496-PA 649 GF10496-PA 3..276 29..313 964 70.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15843-PA 299 GG15843-PA 17..299 31..315 1273 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15131-PA 348 GH15131-PA 23..348 30..315 773 53.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PH 315 CG11905-PH 1..315 1..315 1589 100 Plus
CG11905-PE 315 CG11905-PE 1..315 1..315 1589 100 Plus
CG11905-PC 315 CG11905-PC 1..315 1..315 1589 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12069-PA 295 GI12069-PA 39..295 62..315 742 63.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20695-PA 882 GL20695-PA 595..882 33..315 893 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28285-PA 910 GA28285-PA 620..910 30..315 899 67.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12436-PA 1315 GD12436-PA 644..940 18..315 1373 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13339-PA 649 GJ13339-PA 38..297 62..313 690 62.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17152-PA 234 GK17152-PA 35..234 121..315 638 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22182-PA 295 GE22182-PA 3..295 23..315 1208 89.2 Plus

RE29488.hyp Sequence

Translation from 142 to 1089

> RE29488.hyp
MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG
KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT
IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD
VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM
RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ
AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG
GKAHATADLELDLFT*

RE29488.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PH 315 CG11905-PH 1..315 1..315 1589 100 Plus
CG11905-PE 315 CG11905-PE 1..315 1..315 1589 100 Plus
CG11905-PC 315 CG11905-PC 1..315 1..315 1589 100 Plus