BDGP Sequence Production Resources |
Search the DGRC for RE29488
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 294 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11905-RC |
Protein status: | RE29488.pep: gold |
Preliminary Size: | 2232 |
Sequenced Size: | 1369 |
Gene | Date | Evidence |
---|---|---|
CG11905 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11905 | 2003-02-13 | Blastp of sequenced clone |
CG11905 | 2008-04-29 | Release 5.5 accounting |
CG11905 | 2008-08-15 | Release 5.9 accounting |
CG11905 | 2008-12-18 | 5.12 accounting |
1369 bp (1369 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003767
> RE29488.complete AGTTCATCTTCAGACGTCGCCTGGCTCGCTGGCTCTTGGTTCTTGTTCAA GGATATATTGTCAAGGCGAGGATTGGTCAACGCCACGAACACCAAGCATT TATTGAAAAATCTGAAACTATTCACCAGAACCTCGCGTTAAAATGCGCTT TCTTGTTCTCTCAACACTGCTTCTGGCCTCTTTGGCACTTGGCCAGGCTC AACAGCACGGTGGACTGGCCGTCGATGCCTACTGGCGCACAACCAATATC GAGGCCTGGCCACCAGGAGCACCCGTCGCAGAGAAGTCCGGAAAACTCAT TGCAGGATCTGCTCCGGCCCAGGACCTCACGCCCTATGGAGCCTATCAAC CCGTGCTGTTCAGTGCCCCATACTACGCCGCCTACAATCTGCCCCTGGCC TATGTGGTGCAACCCACCATCGCCAGTGCCGATCAAGCCACCATAGCCAG TGCAACAACCACAACGACCACTACCACAACTGGCCGACCCGAAAGCTTAG CTGATGACAGCTCCAGCGAGTTGGAGAAACCAGAAAAGCTACAGGCTCTG CCTGCAGTGAAGACCCGAACCACTGGGGATCTGAAGAGTGATGTGGGTCT CCGCTCAGCGGTCAGCAAAATAAACCCCGAGTATGTGATCGAAGAGATCG TTCCGGTGCCGGGCAAGCTAGTGATCTCCACTTCTGGGTCACCCCGCTCC GCCAAGCAGCAGTTGAAGAAGGCGATTGCCCCACAAAAAATGAGAAAGCA GGCGGGTGGAAGAGTTCCCTTGAAGGTTGAGGCCACCGGAAAGACCAGCA CGAGTTCCGGCAACTTTCCGCAGATCCCATTTGGAAACTACTTCCTGCCC TATAGACCGGAGCAGGCTCAGGCGATCCAGGGACGCAAGCAGGCTGCACT CATCCTGGAACCTCATTCCAAAGCGGTGGTTGGTAATGGTGGCACTGCCA TATCCACGCCCATTTCCAAGGCGTATCTGAAGAAGGGTGTACCCACCAAC GTTTACTTCAATCCGGAATCTGTGGCCATAGCAGGTGTGGGTGGCAAGGC GCATGCTACGGCGGATTTGGAATTGGATCTGTTCACGTAAAGGAGCAAGG ATTTAACTTAAAGCTCACTTTCATTAACTGATTACTTGGCATTATTTTGA AAGTCAATTGACACAGTACGCAAAACACGCAAAGACAATTTTCCTATGAA ATCAGTTGCTGAAAATGGGCTCTATGTAGTAGGTTACCCAACAGAATCTA ATTGGTAGTTCCTCCTCCCAACTGACCTATGTTCCTATGTTAAGAACATA GGCCTATCTGATGTGTCATTTCTTAGATTGTAAATAAAGTAAACCGTAAA CTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11905-RC | 1517 | CG11905-RC | 10..1362 | 1..1353 | 6765 | 100 | Plus |
CG11905-RE | 1549 | CG11905-RE | 218..1526 | 45..1353 | 6545 | 100 | Plus |
CG11905-RH | 1608 | CG11905-RH | 169..1476 | 46..1353 | 6540 | 100 | Plus |
CG11905-RH | 1608 | CG11905-RH | 1..45 | 1..45 | 225 | 100 | Plus |
CG11905-RE | 1549 | CG11905-RE | 1..36 | 10..45 | 180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16919295..16920422 | 1353..226 | 5415 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 16924645..16924757 | 157..45 | 550 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 16922748..16922815 | 225..158 | 340 | 100 | Minus |
chr3L | 24539361 | chr3L | 16924933..16924977 | 45..1 | 225 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16929854..16930981 | 1353..226 | 5640 | 100 | Minus |
3L | 28110227 | 3L | 16935194..16935306 | 157..45 | 565 | 100 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 225..158 | 340 | 100 | Minus |
3L | 28110227 | 3L | 16935488..16935532 | 45..1 | 225 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16922954..16924081 | 1353..226 | 5640 | 100 | Minus |
3L | 28103327 | 3L | 16928294..16928406 | 157..45 | 565 | 100 | Minus |
3L | 28103327 | 3L | 16926393..16926460 | 225..158 | 340 | 100 | Minus |
3L | 28103327 | 3L | 16928588..16928632 | 45..1 | 225 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16919295..16920422 | 226..1353 | 98 | <- | Minus |
chr3L | 16922748..16922815 | 158..225 | 100 | <- | Minus |
chr3L | 16924645..16924756 | 46..157 | 99 | <- | Minus |
chr3L | 16924933..16924977 | 1..45 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RH | 1..948 | 143..1090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RH | 1..948 | 143..1090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 1..948 | 143..1090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RH | 1..948 | 143..1090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 1..948 | 143..1090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 1..1353 | 1..1353 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 1..1353 | 1..1353 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 5..1357 | 1..1353 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 1..1353 | 1..1353 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11905-RC | 5..1357 | 1..1353 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16929854..16930981 | 226..1353 | 100 | <- | Minus |
3L | 16933293..16933360 | 158..225 | 100 | <- | Minus |
3L | 16935194..16935305 | 46..157 | 100 | <- | Minus |
3L | 16935488..16935532 | 1..45 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16929854..16930981 | 226..1353 | 100 | <- | Minus |
3L | 16933293..16933360 | 158..225 | 100 | <- | Minus |
3L | 16935194..16935305 | 46..157 | 100 | <- | Minus |
3L | 16935488..16935532 | 1..45 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16929854..16930981 | 226..1353 | 100 | <- | Minus |
3L | 16933293..16933360 | 158..225 | 100 | <- | Minus |
3L | 16935194..16935305 | 46..157 | 100 | <- | Minus |
3L | 16935488..16935532 | 1..45 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16922954..16924081 | 226..1353 | 100 | <- | Minus |
arm_3L | 16926393..16926460 | 158..225 | 100 | <- | Minus |
arm_3L | 16928294..16928405 | 46..157 | 100 | <- | Minus |
arm_3L | 16928588..16928632 | 1..45 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16922954..16924081 | 226..1353 | 100 | <- | Minus |
3L | 16926393..16926460 | 158..225 | 100 | <- | Minus |
3L | 16928294..16928405 | 46..157 | 100 | <- | Minus |
3L | 16928588..16928632 | 1..45 | 100 | Minus |
Translation from 142 to 1089
> RE29488.pep MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG GKAHATADLELDLFT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10496-PA | 649 | GF10496-PA | 3..276 | 29..313 | 964 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15843-PA | 299 | GG15843-PA | 17..299 | 31..315 | 1273 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15131-PA | 348 | GH15131-PA | 23..348 | 30..315 | 773 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11905-PH | 315 | CG11905-PH | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PE | 315 | CG11905-PE | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PC | 315 | CG11905-PC | 1..315 | 1..315 | 1589 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12069-PA | 295 | GI12069-PA | 39..295 | 62..315 | 742 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20695-PA | 882 | GL20695-PA | 595..882 | 33..315 | 893 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28285-PA | 910 | GA28285-PA | 620..910 | 30..315 | 899 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12436-PA | 1315 | GD12436-PA | 644..940 | 18..315 | 1373 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13339-PA | 649 | GJ13339-PA | 38..297 | 62..313 | 690 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17152-PA | 234 | GK17152-PA | 35..234 | 121..315 | 638 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22182-PA | 295 | GE22182-PA | 3..295 | 23..315 | 1208 | 89.2 | Plus |
Translation from 142 to 1089
> RE29488.hyp MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG GKAHATADLELDLFT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11905-PH | 315 | CG11905-PH | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PE | 315 | CG11905-PE | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PC | 315 | CG11905-PC | 1..315 | 1..315 | 1589 | 100 | Plus |