Clone RE29502 Report

Search the DGRC for RE29502

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:295
Well:2
Vector:pFlc-1
Associated Gene/Transcriptwgn-RA
Protein status:RE29502.pep: gold
Preliminary Size:1260
Sequenced Size:2425

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6531 2002-01-01 Sim4 clustering to Release 2
CG6531 2002-05-31 Blastp of sequenced clone
CG6531 2003-01-01 Sim4 clustering to Release 3
wgn 2008-04-29 Release 5.5 accounting
wgn 2008-08-15 Release 5.9 accounting
wgn 2008-12-18 5.12 accounting

Clone Sequence Records

RE29502.complete Sequence

2425 bp (2425 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118385

> RE29502.complete
AGTCTCTCATAGTCAGCGAATAGCTGCGTATCGCATCGCTGCGATCGAGC
GCCAAAGAAAATCGAGCCGAGGAAAACGTATTTCCACTTGCCTGACCATA
GATATTTTGCTGGCGCAGCTCGCACTCGCGACGGCCAATGAAAAGTGCAG
TGAATGTACCATTTTTACGATTTTTTTTCCTGTTGCGCGGTTGCCAGTGC
GAAAAGAAAAGTAAAGAAAAGTGCTAATTGTGCAATTGCGATTGCAATTG
ATTGACAACCCGAACGATCGATCGGTCCGTCCATTCATCCATTTTCATTT
TATCGCGAGGGGGCAGTGCGTTGGATCGTTAGATCATTCAAAGTCAAAGA
TGCAAACATGAAGCCTGCCGCCGCCGTCGCGAATTCGAATTGAAAGGCAT
TAAATAGAAGGCAGCGAAAGGCAGAGCAGCAGACGCAGATCATCGCAGAT
CACCGCAGATCGCAAACAACAACCAACGAGTGGAGAAGCGAAAAAATGAT
GCCGCCAAGACTGCCAGGCGGCCATGGAGGAGCCATGCGTAGTCGGAGCA
GCAGCAGTGGCCACCACTTAAACACAACGTTTCACAAGCGCCGACGGAGG
CGACAGCAGCACCACATCGGTGGCAGCCACATCAGCATCAGCCACGGCAG
TTACCTGGCTCTGCTACTGCTGTCCACCACCTGCTCCCTGGTGGCCACCA
GCGCCTCCTCTTCATCCTCCGCTGCAAACACAGACATAGCGCCACCAGAT
CCACCGCCGGTCAGCCAGGTGTCCATCGCCTCCAGCTCGCCCTGCGCCCC
ACAGCATTGGTGGGACTCGCAGCGAGATCGCTGCACACCGTGCACCCGCT
GCCAGGGCGAGATGATACCGCTGCGACCCTGCCAGCTACACACGGACACC
ATCTGCGGTTCCATATACGACCTCAAGATCGACTGGGTTGTCTTGGCCAA
GACCGAACCCAACTGGAAGGAGCGCCGAAAGTCCTCCGAGTATGAGCACT
TCGAGCACAATGCCCCACTGCAGCACCTGACCCACGAGCAACTGCAGCAG
CTGCACGAGGAGGCGGCCGCCGCCTGGGTCCTTGACTGGCAGACTGGCGT
TCTTTACGTGGCCGTGCTCACATGCCTGGTCTTCTTCTCGGTGGCCGCCT
GCATCCTCATCCACCACATGCGCCAGTGGCGACGTATGGAGCGTCGCCTG
GACCAGGATGTGGAGGAGCTGTCAACCAAGCTGATGGCCAAGCTGGCGGA
GGTGCAGAGCCTGGACGGAGGCACCTTCTTCATCGGCAACGCGGACGCCT
TGCGAGGACTGCCCGCCTCCGCAGCGACGACGCATCCAGCAACGACGCAG
TCGGGAATCTTCCAGCCACAACACGTGCTGCTGCCTGAGAAACGCGGCAA
GCATCAGGAGCGACGAATCCTGAAGACCCTGCAGCCCGGCAATGTCTACA
TTGAGGAGAGCAACGCTGGATTGGGCGGCATGGGCGTGGGCCTGGGCGTC
CGCGGCTGTTCCGGCCTGAAGGGCTGAGCCGTAGATGTGGTCAAGGGACA
TACTTAAGGAGTGGCTATGCAGGCGCACGGACGCAGGACGCGGGACGAAG
CGAGAATGGATCCGGAACACGATACGCAAACGGAACCGGAAACGTAAATG
GATTAGAGAAAGAACTTTGTACAAACAGCCGCTTAAAAGTAGGAGGAGGA
CGGAGGAAGGAAACCGAAACTATTATTATTTTTTATATTATTAATCTTAT
TCTAATTATTACGACTTTTTTTTTGTCCTAATATTTAATTGAATCGTTAT
GTTGACTTGTTTGTAATGCGCGGACAGTTGAGGACGCGGGCTTCCCGTTG
TGTGGGAATCCCGAGCGATGCGGCAAAATGTTTTGTACATACTCGTAGAG
ATGAGGCATGTGGCACCGCCCACGTATACCCACGTATATGATAGAAGCGA
TTTAGATTAACAAATCTCTACTTAATGTAAATATTAAGGCGATCGAACAC
GCGACCCCAAACGCAACGAACACACATCGTTGCGGAGTGGAACGAAACCA
AGTAATATTGGCAACATATCAGCTTCTATATGCATGGAACGCATATAGAC
GCACGTATTGTTAACATCACCCATATCCCATATCCTAGTACTAGTATCCA
GAGTAAACAGTATCCTATAATCCCACCAACAACACACACGTACATACATT
TAAACGAGTTAAAATATCCAACGAGAGCATTTTCCGGCTAGCTGCTACCC
CGAGCTTAATCGAATTAACTGTAACAGTAATGATATAGATACAGATATAA
CTACTTATAATAATGCTAATTAACGGATAACTATATCGATAGGGAGAAAT
GTCTATGTCCTAAGTGCTATCAGTGTGCAACAGCAATAAAAACCTTTATG
ATTATACAACAAAAAAAAAAAAAAA

RE29502.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-RA 2435 wgn-RA 19..2429 1..2411 12055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18513216..18514239 2410..1387 5090 99.8 Minus
chrX 22417052 chrX 18517957..18518433 972..496 2385 100 Minus
chrX 22417052 chrX 18523578..18524066 499..1 2295 97.8 Minus
chrX 22417052 chrX 18517656..18517892 1207..971 1185 100 Minus
chrX 22417052 chrX 18514821..18515001 1387..1207 905 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18624041..18625065 2411..1387 5125 100 Minus
X 23542271 X 18634405..18634903 499..1 2480 99.8 Minus
X 23542271 X 18628775..18629251 972..496 2385 100 Minus
X 23542271 X 18628474..18628710 1207..971 1185 100 Minus
X 23542271 X 18625638..18625818 1387..1207 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18632139..18633163 2411..1387 5125 100 Minus
X 23527363 X 18642503..18643001 499..1 2480 99.7 Minus
X 23527363 X 18636873..18637349 972..496 2385 100 Minus
X 23527363 X 18636572..18636808 1207..971 1185 100 Minus
X 23527363 X 18633736..18633916 1387..1207 905 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:39:18 has no hits.

RE29502.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:40:20 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18514821..18515000 1208..1387 100 <- Minus
chrX 18517656..18517890 973..1207 100 <- Minus
chrX 18513216..18514238 1388..2410 95 <- Minus
chrX 18517957..18518433 496..972 100 <- Minus
chrX 18523582..18524066 1..495 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:27 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 496..1527 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:39 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 496..1527 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:24 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 496..1527 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:12 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 496..1527 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:51 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..1032 496..1527 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:27 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..2403 1..2403 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:38 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..2403 1..2403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:24 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 6..2415 1..2410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:12 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 1..2403 1..2403 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:51 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
wgn-RA 6..2415 1..2410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:20 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
X 18624042..18625064 1388..2410 100 <- Minus
X 18625638..18625817 1208..1387 100 <- Minus
X 18628474..18628708 973..1207 100 <- Minus
X 18628775..18629251 496..972 100 <- Minus
X 18634409..18634903 1..495 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:20 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
X 18624042..18625064 1388..2410 100 <- Minus
X 18625638..18625817 1208..1387 100 <- Minus
X 18628474..18628708 973..1207 100 <- Minus
X 18628775..18629251 496..972 100 <- Minus
X 18634409..18634903 1..495 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:20 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
X 18624042..18625064 1388..2410 100 <- Minus
X 18625638..18625817 1208..1387 100 <- Minus
X 18628474..18628708 973..1207 100 <- Minus
X 18628775..18629251 496..972 100 <- Minus
X 18634409..18634903 1..495 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:24 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18519671..18519850 1208..1387 100 <- Minus
arm_X 18522507..18522741 973..1207 100 <- Minus
arm_X 18518075..18519097 1388..2410 100 <- Minus
arm_X 18522808..18523284 496..972 100 <- Minus
arm_X 18528442..18528936 1..495 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:38 Download gff for RE29502.complete
Subject Subject Range Query Range Percent Splice Strand
X 18632140..18633162 1388..2410 100 <- Minus
X 18633736..18633915 1208..1387 100 <- Minus
X 18636572..18636806 973..1207 100 <- Minus
X 18636873..18637349 496..972 100 <- Minus
X 18642507..18643001 1..495 100   Minus

RE29502.pep Sequence

Translation from 495 to 1526

> RE29502.pep
MMPPRLPGGHGGAMRSRSSSSGHHLNTTFHKRRRRRQQHHIGGSHISISH
GSYLALLLLSTTCSLVATSASSSSSAANTDIAPPDPPPVSQVSIASSSPC
APQHWWDSQRDRCTPCTRCQGEMIPLRPCQLHTDTICGSIYDLKIDWVVL
AKTEPNWKERRKSSEYEHFEHNAPLQHLTHEQLQQLHEEAAAAWVLDWQT
GVLYVAVLTCLVFFSVAACILIHHMRQWRRMERRLDQDVEELSTKLMAKL
AEVQSLDGGTFFIGNADALRGLPASAATTHPATTQSGIFQPQHVLLPEKR
GKHQERRILKTLQPGNVYIEESNAGLGGMGVGLGVRGCSGLKG*

RE29502.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22405-PA 384 GF22405-PA 1..363 1..323 1182 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18107-PA 347 GG18107-PA 1..347 1..343 1343 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12331-PA 370 GH12331-PA 122..354 94..323 1026 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-PA 343 CG6531-PA 1..343 1..343 1833 100 Plus
wgn-PB 267 CG6531-PB 1..238 1..238 1297 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27022-PA 301 GL27022-PA 1..284 1..249 827 63.3 Plus
Dper\GL27023-PA 50 GL27023-PA 1..50 287..337 194 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27758-PA 371 GA27758-PA 1..371 1..337 1176 65.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22797-PA 343 GM22797-PA 1..343 1..343 1805 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15625-PA 926 GD15625-PA 821..926 238..343 563 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15183-PA 354 GJ15183-PA 109..354 94..337 982 77.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24955-PA 334 GK24955-PA 69..334 99..325 936 72.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15508-PA 291 GE15508-PA 1..269 1..268 1032 83.5 Plus
Dyak\GE15508-PA 291 GE15508-PA 243..291 298..343 158 85.7 Plus

RE29502.hyp Sequence

Translation from 495 to 1526

> RE29502.hyp
MMPPRLPGGHGGAMRSRSSSSGHHLNTTFHKRRRRRQQHHIGGSHISISH
GSYLALLLLSTTCSLVATSASSSSSAANTDIAPPDPPPVSQVSIASSSPC
APQHWWDSQRDRCTPCTRCQGEMIPLRPCQLHTDTICGSIYDLKIDWVVL
AKTEPNWKERRKSSEYEHFEHNAPLQHLTHEQLQQLHEEAAAAWVLDWQT
GVLYVAVLTCLVFFSVAACILIHHMRQWRRMERRLDQDVEELSTKLMAKL
AEVQSLDGGTFFIGNADALRGLPASAATTHPATTQSGIFQPQHVLLPEKR
GKHQERRILKTLQPGNVYIEESNAGLGGMGVGLGVRGCSGLKG*

RE29502.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
wgn-PA 343 CG6531-PA 1..343 1..343 1833 100 Plus
wgn-PB 267 CG6531-PB 1..238 1..238 1297 100 Plus