BDGP Sequence Production Resources |
Search the DGRC for RE29555
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 295 |
Well: | 55 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11089-RA |
Protein status: | RE29555.pep: gold |
Preliminary Size: | 2249 |
Sequenced Size: | 2265 |
Gene | Date | Evidence |
---|---|---|
CG11089 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11089 | 2004-01-14 | Blastp of sequenced clone |
CG11089 | 2008-04-29 | Release 5.5 accounting |
CG11089 | 2008-08-15 | Release 5.9 accounting |
CG11089 | 2008-12-18 | 5.12 accounting |
2265 bp (2265 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011462
> RE29555.complete ATATTCCGGCAGAATTTTGTGTGGTTCCACTATTTCCCTTTAAAACTCTA CCATTATTTTTCGATTTTTGCCCAGCGGTTCAGACGCAATTAGAGAAACC AATCATCAACCATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGTCGGAC AAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGCTTTGA CCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGGCCTGA AGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCGGTGGA CGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCCCGCAC CACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCTTATCC AGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGAAGCCT GATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGCGTTAC TCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGTCTGCG AAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGGGGAAT ACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACGCACAC CGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTATGGAT CTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACCAGAAG CCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTCCTCAA TGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTGGCAGT TGGTTAGGGAACTGAAGAAGGCTCTGCAGCTGCCGGCGGCCACCAGCTTT AAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAATCCGGC ACAGGCCAAGCTGTGCATGGTGGATGATCTGTACGAGCAGTTGACACCTC TGGCAACGGCCTATGCTCGTGCCCGTGGTGCCGACCGCATGAGCTCCTTC GGCGACTTTGTGGCCCTCTCTGATGTGTGCGATGTTGTGACGGCCAGGAT AATCTCGCGAGAGGTGTCCGATGGTATTATTGCCGCGGGTTATGAGCCCG AAGCTCTGGAGATCCTGAAGAAAAAGAAGAATGGCGGCTACTGTATACTG CAGATGGACCCCAACTACGAACCCTCCGCGGTGGAGCGCAAGACTATTTT TGGTCTGACGCTGGAGCAGAAGCGCAACGATGCTGTCATCGACGCCTCGC TCTTTTCCAATGTGGTGAGCAAGCGTGGTCCTCTGCCCGAGGTGGCTGTG CGGGATCTGATCGTGGCCACCATTGCCTTGAAGTACACTCAGAGCAACTC CGTGTGCTACGCCCGCGATGGCCAGGTCGTGGGCATCGGTGCCGGCCAGC AGTCGAGGATTCACTGCACCCGCTTGGCGGGCGAGAAGGCGGACAACTGG TGGCTGCGTCAGCATCCCAGCGTGGCCGGCATGAAGTTCAAGGCTGGTGT GAAGCGGGCGGAGATCTCTAATGCAATCGACAATTACGTAAACGGAACTG TGGGCAAGGACATGCCTTTGTCGCAGTTCGAGGGAATGTTCGATAAGGCA CCAGCCCAACTGACCAGTGAGCAAAAAGTGGAATGGTTAAAGCAGCTGAG TGGCGTGGCCTTGGGATCCGATGCCTTCTTCCCCTTCCGTGATAATATCG ATCGCGCTAGCCTGAGCGGCGTCTCCTACATAGCCAGTCCCGCAGGATCC ACCAATGATGCTGGTGTCATTGCCGCCTGCGATGAGCACGGTATCATCAT GGCCCATACCAATCTGCGATTGTTCCACCATTAGGTTCAACACACTCTTG AGTATACGATTCATTCCCAGTTTTTAAGCTCTTTCTTTGATTTCCATAAA GTTCAACTTTAAATCCCAACTTCTCAAGTCGAATACATAAGAGAATTGTA AATAATTCTCAATTCAGTTAATTTGATTTACGTTCTAAACTGAAATCTAT AACCTACGTAGAAAGGCATTTTTAAATATGTAGCAAAATTACATATCTGA AATAATTGTAGTTGTATTTGAAATATTTTTGATAACATTTGTAGCGTTTT AAGTATTTTTATAGAAACACCCTGTTAATCAAACCCCATCAAACTGCCTT ATGACCATTCCAAGCTCAATAAAACCACTTGCCTTTAGTTAGTTAAACGA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11089-RA | 2278 | CG11089-RA | 22..2272 | 1..2251 | 11240 | 99.9 | Plus |
CG11089.b | 4089 | CG11089.b | 1908..4089 | 68..2249 | 10895 | 99.9 | Plus |
CG11089.a | 2251 | CG11089.a | 70..2251 | 68..2249 | 10895 | 99.9 | Plus |
CG11089.b | 4089 | CG11089.b | 3..69 | 1..67 | 335 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20702362..20703435 | 130..1203 | 5355 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 20704179..20704664 | 1764..2249 | 2430 | 100 | Plus |
chr3R | 27901430 | chr3R | 20703497..20703934 | 1202..1639 | 2190 | 100 | Plus |
chr3R | 27901430 | chr3R | 20703992..20704118 | 1638..1764 | 635 | 100 | Plus |
chr3R | 27901430 | chr3R | 20700254..20700320 | 1..67 | 335 | 100 | Plus |
chr3R | 27901430 | chr3R | 20702243..20702305 | 68..130 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24879176..24880249 | 130..1203 | 5355 | 99.9 | Plus |
3R | 32079331 | 3R | 24880993..24881480 | 1764..2251 | 2440 | 100 | Plus |
3R | 32079331 | 3R | 24880311..24880748 | 1202..1639 | 2190 | 100 | Plus |
3R | 32079331 | 3R | 24880806..24880932 | 1638..1764 | 635 | 100 | Plus |
3R | 32079331 | 3R | 24877068..24877134 | 1..67 | 335 | 100 | Plus |
3R | 32079331 | 3R | 24879057..24879119 | 68..130 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24620007..24621080 | 130..1203 | 5355 | 99.9 | Plus |
3R | 31820162 | 3R | 24621824..24622311 | 1764..2251 | 2440 | 100 | Plus |
3R | 31820162 | 3R | 24621142..24621579 | 1202..1639 | 2190 | 100 | Plus |
3R | 31820162 | 3R | 24621637..24621763 | 1638..1764 | 635 | 100 | Plus |
3R | 31820162 | 3R | 24617899..24617965 | 1..67 | 335 | 100 | Plus |
3R | 31820162 | 3R | 24619888..24619950 | 68..130 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 113..166 | 2155..2102 | 117 | 68.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20700254..20700320 | 1..67 | 100 | -> | Plus |
chr3R | 20702243..20702305 | 68..130 | 100 | -> | Plus |
chr3R | 20702363..20703435 | 131..1203 | 99 | -> | Plus |
chr3R | 20703499..20703932 | 1204..1637 | 100 | -> | Plus |
chr3R | 20703992..20704118 | 1638..1764 | 100 | -> | Plus |
chr3R | 20704180..20704664 | 1765..2249 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 1..1773 | 112..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RC | 1..1773 | 112..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RC | 1..1773 | 112..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 1..1773 | 112..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 1..1773 | 112..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 1..2249 | 1..2249 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RE | 1887..4068 | 68..2249 | 99 | Plus | |
CG11089-RE | 1..67 | 1..67 | 100 | -- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 24..2272 | 1..2249 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 1..2249 | 1..2249 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11089-RA | 24..2272 | 1..2249 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24877068..24877134 | 1..67 | 100 | -> | Plus |
3R | 24879057..24879119 | 68..130 | 100 | -> | Plus |
3R | 24879177..24880249 | 131..1203 | 99 | -> | Plus |
3R | 24880313..24880746 | 1204..1637 | 100 | -> | Plus |
3R | 24880806..24880932 | 1638..1764 | 100 | -> | Plus |
3R | 24880994..24881478 | 1765..2249 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24877068..24877134 | 1..67 | 100 | -> | Plus |
3R | 24879057..24879119 | 68..130 | 100 | -> | Plus |
3R | 24879177..24880249 | 131..1203 | 99 | -> | Plus |
3R | 24880313..24880746 | 1204..1637 | 100 | -> | Plus |
3R | 24880806..24880932 | 1638..1764 | 100 | -> | Plus |
3R | 24880994..24881478 | 1765..2249 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24877068..24877134 | 1..67 | 100 | -> | Plus |
3R | 24879057..24879119 | 68..130 | 100 | -> | Plus |
3R | 24879177..24880249 | 131..1203 | 99 | -> | Plus |
3R | 24880313..24880746 | 1204..1637 | 100 | -> | Plus |
3R | 24880806..24880932 | 1638..1764 | 100 | -> | Plus |
3R | 24880994..24881478 | 1765..2249 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20702790..20702856 | 1..67 | 100 | -> | Plus |
arm_3R | 20704779..20704841 | 68..130 | 100 | -> | Plus |
arm_3R | 20704899..20705971 | 131..1203 | 99 | -> | Plus |
arm_3R | 20706035..20706468 | 1204..1637 | 100 | -> | Plus |
arm_3R | 20706528..20706654 | 1638..1764 | 100 | -> | Plus |
arm_3R | 20706716..20707200 | 1765..2249 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24620008..24621080 | 131..1203 | 99 | -> | Plus |
3R | 24621144..24621577 | 1204..1637 | 100 | -> | Plus |
3R | 24621637..24621763 | 1638..1764 | 100 | -> | Plus |
3R | 24621825..24622309 | 1765..2249 | 100 | Plus | |
3R | 24617899..24617965 | 1..67 | 100 | -> | Plus |
3R | 24619888..24619950 | 68..130 | 100 | -> | Plus |
Translation from 111 to 1883
> RE29555.pep MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16309-PA | 590 | GF16309-PA | 1..590 | 1..590 | 2994 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11332-PA | 590 | GG11332-PA | 1..590 | 1..590 | 3124 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14053-PA | 590 | GH14053-PA | 1..590 | 1..590 | 2859 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11089-PB | 590 | CG11089-PB | 1..590 | 1..590 | 2998 | 100 | Plus |
CG11089-PA | 590 | CG11089-PA | 1..590 | 1..590 | 2998 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24428-PA | 590 | GI24428-PA | 1..590 | 1..590 | 2880 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24458-PA | 590 | GL24458-PA | 1..590 | 1..590 | 2960 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10751-PA | 590 | GA10751-PA | 1..590 | 1..590 | 2960 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26640-PA | 590 | GM26640-PA | 1..590 | 1..590 | 3097 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21142-PA | 590 | GD21142-PA | 1..590 | 1..590 | 3126 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10703-PA | 590 | GJ10703-PA | 1..590 | 1..590 | 2878 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12972-PA | 590 | GK12972-PA | 1..590 | 1..590 | 2900 | 90.5 | Plus |
Dwil\GK13325-PA | 78 | GK13325-PA | 17..72 | 261..316 | 201 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23527-PA | 590 | GE23527-PA | 1..590 | 1..590 | 3123 | 99.2 | Plus |
Translation from 111 to 1883
> RE29555.hyp MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*