Clone RE29555 Report

Search the DGRC for RE29555

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:295
Well:55
Vector:pFlc-1
Associated Gene/TranscriptCG11089-RA
Protein status:RE29555.pep: gold
Preliminary Size:2249
Sequenced Size:2265

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11089 2003-01-01 Sim4 clustering to Release 3
CG11089 2004-01-14 Blastp of sequenced clone
CG11089 2008-04-29 Release 5.5 accounting
CG11089 2008-08-15 Release 5.9 accounting
CG11089 2008-12-18 5.12 accounting

Clone Sequence Records

RE29555.complete Sequence

2265 bp (2265 high quality bases) assembled on 2004-01-14

GenBank Submission: BT011462

> RE29555.complete
ATATTCCGGCAGAATTTTGTGTGGTTCCACTATTTCCCTTTAAAACTCTA
CCATTATTTTTCGATTTTTGCCCAGCGGTTCAGACGCAATTAGAGAAACC
AATCATCAACCATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGTCGGAC
AAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGCTTTGA
CCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGGCCTGA
AGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCGGTGGA
CGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCCCGCAC
CACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCTTATCC
AGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGAAGCCT
GATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGCGTTAC
TCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGTCTGCG
AAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGGGGAAT
ACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACGCACAC
CGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTATGGAT
CTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACCAGAAG
CCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTCCTCAA
TGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTGGCAGT
TGGTTAGGGAACTGAAGAAGGCTCTGCAGCTGCCGGCGGCCACCAGCTTT
AAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAATCCGGC
ACAGGCCAAGCTGTGCATGGTGGATGATCTGTACGAGCAGTTGACACCTC
TGGCAACGGCCTATGCTCGTGCCCGTGGTGCCGACCGCATGAGCTCCTTC
GGCGACTTTGTGGCCCTCTCTGATGTGTGCGATGTTGTGACGGCCAGGAT
AATCTCGCGAGAGGTGTCCGATGGTATTATTGCCGCGGGTTATGAGCCCG
AAGCTCTGGAGATCCTGAAGAAAAAGAAGAATGGCGGCTACTGTATACTG
CAGATGGACCCCAACTACGAACCCTCCGCGGTGGAGCGCAAGACTATTTT
TGGTCTGACGCTGGAGCAGAAGCGCAACGATGCTGTCATCGACGCCTCGC
TCTTTTCCAATGTGGTGAGCAAGCGTGGTCCTCTGCCCGAGGTGGCTGTG
CGGGATCTGATCGTGGCCACCATTGCCTTGAAGTACACTCAGAGCAACTC
CGTGTGCTACGCCCGCGATGGCCAGGTCGTGGGCATCGGTGCCGGCCAGC
AGTCGAGGATTCACTGCACCCGCTTGGCGGGCGAGAAGGCGGACAACTGG
TGGCTGCGTCAGCATCCCAGCGTGGCCGGCATGAAGTTCAAGGCTGGTGT
GAAGCGGGCGGAGATCTCTAATGCAATCGACAATTACGTAAACGGAACTG
TGGGCAAGGACATGCCTTTGTCGCAGTTCGAGGGAATGTTCGATAAGGCA
CCAGCCCAACTGACCAGTGAGCAAAAAGTGGAATGGTTAAAGCAGCTGAG
TGGCGTGGCCTTGGGATCCGATGCCTTCTTCCCCTTCCGTGATAATATCG
ATCGCGCTAGCCTGAGCGGCGTCTCCTACATAGCCAGTCCCGCAGGATCC
ACCAATGATGCTGGTGTCATTGCCGCCTGCGATGAGCACGGTATCATCAT
GGCCCATACCAATCTGCGATTGTTCCACCATTAGGTTCAACACACTCTTG
AGTATACGATTCATTCCCAGTTTTTAAGCTCTTTCTTTGATTTCCATAAA
GTTCAACTTTAAATCCCAACTTCTCAAGTCGAATACATAAGAGAATTGTA
AATAATTCTCAATTCAGTTAATTTGATTTACGTTCTAAACTGAAATCTAT
AACCTACGTAGAAAGGCATTTTTAAATATGTAGCAAAATTACATATCTGA
AATAATTGTAGTTGTATTTGAAATATTTTTGATAACATTTGTAGCGTTTT
AAGTATTTTTATAGAAACACCCTGTTAATCAAACCCCATCAAACTGCCTT
ATGACCATTCCAAGCTCAATAAAACCACTTGCCTTTAGTTAGTTAAACGA
AAAAAAAAAAAAAAA

RE29555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-RA 2278 CG11089-RA 22..2272 1..2251 11240 99.9 Plus
CG11089.b 4089 CG11089.b 1908..4089 68..2249 10895 99.9 Plus
CG11089.a 2251 CG11089.a 70..2251 68..2249 10895 99.9 Plus
CG11089.b 4089 CG11089.b 3..69 1..67 335 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20702362..20703435 130..1203 5355 99.9 Plus
chr3R 27901430 chr3R 20704179..20704664 1764..2249 2430 100 Plus
chr3R 27901430 chr3R 20703497..20703934 1202..1639 2190 100 Plus
chr3R 27901430 chr3R 20703992..20704118 1638..1764 635 100 Plus
chr3R 27901430 chr3R 20700254..20700320 1..67 335 100 Plus
chr3R 27901430 chr3R 20702243..20702305 68..130 315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24879176..24880249 130..1203 5355 99.9 Plus
3R 32079331 3R 24880993..24881480 1764..2251 2440 100 Plus
3R 32079331 3R 24880311..24880748 1202..1639 2190 100 Plus
3R 32079331 3R 24880806..24880932 1638..1764 635 100 Plus
3R 32079331 3R 24877068..24877134 1..67 335 100 Plus
3R 32079331 3R 24879057..24879119 68..130 315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24620007..24621080 130..1203 5355 99.9 Plus
3R 31820162 3R 24621824..24622311 1764..2251 2440 100 Plus
3R 31820162 3R 24621142..24621579 1202..1639 2190 100 Plus
3R 31820162 3R 24621637..24621763 1638..1764 635 100 Plus
3R 31820162 3R 24617899..24617965 1..67 335 100 Plus
3R 31820162 3R 24619888..24619950 68..130 315 100 Plus
Blast to na_te.dros performed 2019-03-15 14:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 113..166 2155..2102 117 68.5 Minus

RE29555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:10:49 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20700254..20700320 1..67 100 -> Plus
chr3R 20702243..20702305 68..130 100 -> Plus
chr3R 20702363..20703435 131..1203 99 -> Plus
chr3R 20703499..20703932 1204..1637 100 -> Plus
chr3R 20703992..20704118 1638..1764 100 -> Plus
chr3R 20704180..20704664 1765..2249 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:08:00 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..1773 112..1884 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:05 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RC 1..1773 112..1884 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:21:18 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RC 1..1773 112..1884 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:30:52 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..1773 112..1884 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:52:33 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..1773 112..1884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:51:36 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..2249 1..2249 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:05 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RE 1887..4068 68..2249 99   Plus
CG11089-RE 1..67 1..67 100 -- Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:21:18 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 24..2272 1..2249 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:30:52 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..2249 1..2249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:52:33 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 24..2272 1..2249 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:49 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24877068..24877134 1..67 100 -> Plus
3R 24879057..24879119 68..130 100 -> Plus
3R 24879177..24880249 131..1203 99 -> Plus
3R 24880313..24880746 1204..1637 100 -> Plus
3R 24880806..24880932 1638..1764 100 -> Plus
3R 24880994..24881478 1765..2249 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:49 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24877068..24877134 1..67 100 -> Plus
3R 24879057..24879119 68..130 100 -> Plus
3R 24879177..24880249 131..1203 99 -> Plus
3R 24880313..24880746 1204..1637 100 -> Plus
3R 24880806..24880932 1638..1764 100 -> Plus
3R 24880994..24881478 1765..2249 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:49 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24877068..24877134 1..67 100 -> Plus
3R 24879057..24879119 68..130 100 -> Plus
3R 24879177..24880249 131..1203 99 -> Plus
3R 24880313..24880746 1204..1637 100 -> Plus
3R 24880806..24880932 1638..1764 100 -> Plus
3R 24880994..24881478 1765..2249 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:21:18 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20702790..20702856 1..67 100 -> Plus
arm_3R 20704779..20704841 68..130 100 -> Plus
arm_3R 20704899..20705971 131..1203 99 -> Plus
arm_3R 20706035..20706468 1204..1637 100 -> Plus
arm_3R 20706528..20706654 1638..1764 100 -> Plus
arm_3R 20706716..20707200 1765..2249 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:25 Download gff for RE29555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24620008..24621080 131..1203 99 -> Plus
3R 24621144..24621577 1204..1637 100 -> Plus
3R 24621637..24621763 1638..1764 100 -> Plus
3R 24621825..24622309 1765..2249 100   Plus
3R 24617899..24617965 1..67 100 -> Plus
3R 24619888..24619950 68..130 100 -> Plus

RE29555.pep Sequence

Translation from 111 to 1883

> RE29555.pep
MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD
VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV
CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD
YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS
QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE
LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA
YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE
ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN
VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI
HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD
MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS
LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*

RE29555.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16309-PA 590 GF16309-PA 1..590 1..590 2994 93.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11332-PA 590 GG11332-PA 1..590 1..590 3124 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14053-PA 590 GH14053-PA 1..590 1..590 2859 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-PB 590 CG11089-PB 1..590 1..590 2998 100 Plus
CG11089-PA 590 CG11089-PA 1..590 1..590 2998 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24428-PA 590 GI24428-PA 1..590 1..590 2880 89.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24458-PA 590 GL24458-PA 1..590 1..590 2960 92.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10751-PA 590 GA10751-PA 1..590 1..590 2960 92.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26640-PA 590 GM26640-PA 1..590 1..590 3097 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21142-PA 590 GD21142-PA 1..590 1..590 3126 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10703-PA 590 GJ10703-PA 1..590 1..590 2878 89.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12972-PA 590 GK12972-PA 1..590 1..590 2900 90.5 Plus
Dwil\GK13325-PA 78 GK13325-PA 17..72 261..316 201 69.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23527-PA 590 GE23527-PA 1..590 1..590 3123 99.2 Plus

RE29555.hyp Sequence

Translation from 111 to 1883

> RE29555.hyp
MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD
VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV
CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD
YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS
QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE
LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA
YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE
ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN
VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI
HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD
MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS
LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*

RE29555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-PB 590 CG11089-PB 1..590 1..590 2998 100 Plus
CG11089-PA 590 CG11089-PA 1..590 1..590 2998 100 Plus