BDGP Sequence Production Resources |
Search the DGRC for RE29623
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 296 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12400-RA |
Protein status: | RE29623.pep: gold |
Preliminary Size: | 422 |
Sequenced Size: | 471 |
Gene | Date | Evidence |
---|---|---|
CG12400 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12400 | 2002-05-18 | Blastp of sequenced clone |
CG12400 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12400 | 2008-04-29 | Release 5.5 accounting |
CG12400 | 2008-08-15 | Release 5.9 accounting |
CG12400 | 2008-12-18 | 5.12 accounting |
471 bp (471 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119127
> RE29623.complete AGTTGCCCACCGCTATTGTTTTTCATCCTATCAACATGAGTGCCGTGAAC GATCCGCTGGAACTTTTGACGAACAAGGGCACCCACGAGCCTTCTTTCCT CTCGCCGATATGGAATCCGATTGCCTGCGGTGTGGCCGGCGTGGGCGCGG CCATTTTCATCAACTGGGGCTTCCGTAAGCCCGTGTTTTCCGGCATCCAG AAGCACATCGCCTTCGGAGCTATCGGCGTCGGCGCAGGAGCTTATTTCGA TCAGAAGAGGAACGAGTACCTGGCCAAAAGGGACGCCGTCCTCCGGCACT ACATCGAACTGCATCCCGACGATTTCCCGGTGAAGGAACGCAAGACCTAT GGCCAAGTGCTGGAGAGTTGGGTGCCAGTGCGCTAAGTGGATCTAAATCT TTGTTGTCAAACGAACGATGGAAGTAGTTAATAAAACAGCTTTAATTGTA AAACATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12400-RA | 762 | CG12400-RA | 130..586 | 1..457 | 2285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 3145187..3145379 | 193..1 | 965 | 100 | Minus |
chr2L | 23010047 | chr2L | 3144965..3145109 | 336..192 | 725 | 100 | Minus |
chr2L | 23010047 | chr2L | 3144790..3144910 | 456..336 | 605 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 3145188..3145379 | 1..192 | 100 | Minus | |
chr2L | 3144965..3145108 | 193..336 | 100 | <- | Minus |
chr2L | 3144790..3144909 | 337..456 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..351 | 36..386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..351 | 36..386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..351 | 36..386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..351 | 36..386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..351 | 36..386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..456 | 1..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..456 | 1..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 3..458 | 1..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 1..456 | 1..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12400-RA | 3..458 | 1..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3145130..3145249 | 337..456 | 100 | <- | Minus |
2L | 3145305..3145448 | 193..336 | 100 | <- | Minus |
2L | 3145528..3145719 | 1..192 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3145130..3145249 | 337..456 | 100 | <- | Minus |
2L | 3145305..3145448 | 193..336 | 100 | <- | Minus |
2L | 3145528..3145719 | 1..192 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3145130..3145249 | 337..456 | 100 | <- | Minus |
2L | 3145305..3145448 | 193..336 | 100 | <- | Minus |
2L | 3145528..3145719 | 1..192 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 3145130..3145249 | 337..456 | 100 | <- | Minus |
arm_2L | 3145305..3145448 | 193..336 | 100 | <- | Minus |
arm_2L | 3145528..3145719 | 1..192 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3145305..3145448 | 193..336 | 100 | <- | Minus |
2L | 3145130..3145249 | 337..456 | 100 | <- | Minus |
2L | 3145528..3145719 | 1..192 | 100 | Minus |
Translation from 2 to 385
> RE29623.hyp LPTAIVFHPINMSAVNDPLELLTNKGTHEPSFLSPIWNPIACGVAGVGAA IFINWGFRKPVFSGIQKHIAFGAIGVGAGAYFDQKRNEYLAKRDAVLRHY IELHPDDFPVKERKTYGQVLESWVPVR*
Translation from 35 to 385
> RE29623.pep MSAVNDPLELLTNKGTHEPSFLSPIWNPIACGVAGVGAAIFINWGFRKPV FSGIQKHIAFGAIGVGAGAYFDQKRNEYLAKRDAVLRHYIELHPDDFPVK ERKTYGQVLESWVPVR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20581-PA | 116 | GF20581-PA | 1..116 | 1..116 | 544 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24458-PA | 116 | GG24458-PA | 1..116 | 1..116 | 590 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10285-PA | 118 | GH10285-PA | 4..118 | 2..116 | 491 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-B14.5B-PB | 116 | CG12400-PB | 1..116 | 1..116 | 624 | 100 | Plus |
ND-B14.5B-PA | 116 | CG12400-PA | 1..116 | 1..116 | 624 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17982-PA | 118 | GI17982-PA | 5..118 | 3..116 | 416 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26532-PA | 118 | GL26532-PA | 3..118 | 1..116 | 463 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11610-PA | 118 | GA11610-PA | 3..118 | 1..116 | 463 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18165-PA | 116 | GM18165-PA | 1..116 | 1..116 | 609 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22775-PA | 116 | GD22775-PA | 1..116 | 1..116 | 605 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19555-PA | 118 | GJ19555-PA | 4..118 | 2..116 | 474 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18269-PA | 118 | GK18269-PA | 4..118 | 2..116 | 515 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14937-PA | 116 | GE14937-PA | 1..116 | 1..116 | 584 | 91.4 | Plus |