Clone RE29709 Report

Search the DGRC for RE29709

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:297
Well:9
Vector:pFlc-1
Associated Gene/Transcriptswi2-RA
Protein status:RE29709.pep: gold
Preliminary Size:1446
Sequenced Size:2596

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14485 2002-01-01 Sim4 clustering to Release 2
CG14485 2002-02-22 Blastp of sequenced clone
CG14485 2003-01-01 Sim4 clustering to Release 3
swi2 2008-04-29 Release 5.5 accounting
swi2 2008-08-15 Release 5.9 accounting
swi2 2008-12-18 5.12 accounting

Clone Sequence Records

RE29709.complete Sequence

2596 bp (2596 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084149

> RE29709.complete
GCGTTTGAACTTCAAACGCGAGAAAAGTAGCACAGCGCGGATAGATACGC
GGATGCGTGGTCATTAAACGACGGATCGCGGAAAAAAACGAATTTCTTGA
TTATGTTTTTAGCATAGAGCAAATGGCAGACCCGAAACAATTCGATCGCA
ATTGCCCAACCTGCTCCACCTGCGCGCGATCGTGACAATGGAATATTCTG
ATTGAAAACAACGCAAGCCGGATAAACAGTCTCAAAATAAATATTTAAAA
ATAACCCAAAAATTAATATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAA
GCAGCCGAAACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCG
TGCCGCGGATGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTA
CCATAACCACCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTC
GGTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAA
CCGGAATGGAACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGC
TGAACCAATCTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTT
CTGTGCGGCTGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAA
ATTGCCTCGCCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAAT
TCAAATTCGACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCG
TGGACGAATCTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCC
GCTCAAGGTCTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGAC
CACTGTTGCTGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCG
TGGAACTGTACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGG
ACGCCTGGTGGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATA
AGGAACGCCAGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGA
CAATGCCAATCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCA
CATCTTACCCAAGACTCACATACCGCTCTATACGGTCAACTGTTCCCATT
TGCAGTTCCATCGCTTGCCTGACTTTTTGCCGGACAACACCACCACTTTA
GTTATAAACGATAATATGATCAGTGACATAAATCCGCTGCGGGACAATCC
CCACTACCGCCACGTTGTGGATATGCAGCTGGAGAACAATCAGATATCCA
ATGTGGACAACTTGGAGGACACTTACTGGCTGCAGAACTTCCGCTTGCTC
AATCTGCGTGGCAACAATCTGCGCAAGCTTCATGTCTACGCCCTGGACAA
CGCTCTGGATGACAACGAGAATGCCAATCTGCTATTGCTAAGTCGAAATC
CCTGGCACTGCACCTGCAAGTTTGGCAGCAGAATGCGTGAGCTGTTGACG
AAGTACAAGGACATCGTGCGTGATGCCTGGAATGTGAGCTGCACCTACCG
CCTGGATGACGACCAGCTGCTGGCCAAGGTGCTGACCCTCAGTCGCCAGG
AGATGTGCAATTTAAGCGTGGAGGGCGGCACTCAGATCCATCCCATCGAT
TGGCTAAACGGGGTGCTGGCCAGCCTCATATTTCTTATCCTGGGCAAGCT
TGCCTACGATTACTACTACTACAAGTATTACGGTCGAGTTCCTTGGATTG
TGATGAAAATGCCCTAGTCTCTAGATCTAATGTTAAAGGAAGTTCAACTC
GAAAGTATTTCTCAACCACCGACGATGGCTTTCGGTTTATTCTTGAAAAT
CTACAAAAACAATACCGGTCTTTGTATCATATATGAATATTTATATATAT
ATATATAAATAATGTTGTTTAGGTATTTATGTATGTATATTTAAGCTAGG
TCAACGCAAAACTCTCAAAATAGTTGTTTTCCACACTATTGCACTGTTCA
AATTGTTTTGTATGGTTAAAAACATTCGTTCTCACGTTCCTACATATTTG
ACGGTTTATTTTAAGCATTTATCCTGCATTTAAATTGGCACAAAGCGCTT
AATCTTTGATAATGAGAAACAGCTAAGATAGGTTTATGTTTGCAACTGGA
CAGAACGGAATCTGTGTGAATTTTAGGTTAGTTACACATTATTCCATTTA
AATGAATCTAATTTTGTATAATGTATATTTACAATTAAAAACCTTGATTT
AAATTCTTTGGCTCTCGAAATCAGTGCAAAATGTCGCATCTTTTCGGTCA
AAGCAAATGCAAAATGATTAAAATAATTGTATAGGATACAAGCTTATAAA
TTAAACAACAGTGCTGGACATTGTAAACAAAGCTTAAAACATTTTTGTAC
TTTACATCAATCAAGTGAAAATTCAAACAAGGCTTAATATTTCGCTGGCT
GTAAGCGGCATATCTAAAATTCTTTTGGTTTCCTTCGTGAGTCCATTGAA
TGGCGGTAAAAAAGGTCGGCAATGTTTCTTATAAATTTGTTGTATAAAAG
TCGAAGTAAAATTTAGATCGTTTAAAATTGAAAAAAAAAAAAAAAA

RE29709.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-RA 2581 swi2-RA 4..2581 4..2581 12860 99.9 Plus
CG4966-RA 3627 CG4966-RA 2955..3627 2581..1909 3365 100 Minus
CG4966-RB 3588 CG4966-RB 2941..3588 2581..1934 3240 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13577377..13578739 2580..1218 6740 99.6 Minus
chr2R 21145070 chr2R 13579041..13579525 1039..555 2425 100 Minus
chr2R 21145070 chr2R 13582121..13582459 342..4 1665 99.4 Minus
chr2R 21145070 chr2R 13579687..13579901 554..340 1045 99.1 Minus
chr2R 21145070 chr2R 13578803..13578983 1218..1038 890 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:47:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17690274..17691637 2581..1218 6820 100 Minus
2R 25286936 2R 17691942..17692426 1039..555 2425 100 Minus
2R 25286936 2R 17695010..17695348 342..4 1665 99.4 Minus
2R 25286936 2R 17692579..17692793 554..340 1075 100 Minus
2R 25286936 2R 17691704..17691884 1218..1038 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17691473..17692836 2581..1218 6820 100 Minus
2R 25260384 2R 17693141..17693625 1039..555 2425 100 Minus
2R 25260384 2R 17696209..17696547 342..4 1665 99.4 Minus
2R 25260384 2R 17693778..17693992 554..340 1075 100 Minus
2R 25260384 2R 17692903..17693083 1218..1038 905 100 Minus
Blast to na_te.dros performed 2019-03-16 13:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 697..844 2016..1873 135 59.3 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 1321..1580 2180..2427 128 54.2 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 925..1054 2305..2439 123 57 Plus
412 7567 412 412 7567bp 3558..3636 2062..1987 116 67.5 Minus

RE29709.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:23:32 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13577377..13578738 1219..2580 99 <- Minus
chr2R 13578803..13578982 1039..1218 99 <- Minus
chr2R 13579042..13579525 555..1038 100 <- Minus
chr2R 13579687..13579899 342..554 99 <- Minus
chr2R 13582122..13582462 1..341 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:08:06 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..1500 268..1767 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:37 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..1500 268..1767 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:38 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..1500 268..1767 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:56 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..1500 268..1767 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:05 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..1500 268..1767 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:43 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..2580 1..2580 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:37 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..2580 1..2580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:38 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 3..2582 1..2580 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:56 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..2580 1..2580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:05 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 3..2582 1..2580 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:32 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17690275..17691636 1219..2580 100 <- Minus
2R 17691704..17691883 1039..1218 100 <- Minus
2R 17691943..17692426 555..1038 100 <- Minus
2R 17692579..17692791 342..554 100 <- Minus
2R 17695011..17695351 1..341 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:32 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17690275..17691636 1219..2580 100 <- Minus
2R 17691704..17691883 1039..1218 100 <- Minus
2R 17691943..17692426 555..1038 100 <- Minus
2R 17692579..17692791 342..554 100 <- Minus
2R 17695011..17695351 1..341 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:32 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17690275..17691636 1219..2580 100 <- Minus
2R 17691704..17691883 1039..1218 100 <- Minus
2R 17691943..17692426 555..1038 100 <- Minus
2R 17692579..17692791 342..554 100 <- Minus
2R 17695011..17695351 1..341 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:38 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13580084..13580296 342..554 100 <- Minus
arm_2R 13582516..13582856 1..341 99   Minus
arm_2R 13577780..13579141 1219..2580 100 <- Minus
arm_2R 13579209..13579388 1039..1218 100 <- Minus
arm_2R 13579448..13579931 555..1038 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:05 Download gff for RE29709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17691474..17692835 1219..2580 100 <- Minus
2R 17692903..17693082 1039..1218 100 <- Minus
2R 17693142..17693625 555..1038 100 <- Minus
2R 17693778..17693990 342..554 100 <- Minus
2R 17696210..17696550 1..341 99   Minus

RE29709.pep Sequence

Translation from 267 to 1766

> RE29709.pep
MPSGVFQKRPKAAETISLFCMILIRLSRAADDSHETSTLLATITTITTEI
IPMPDSGRSCFGWSSAPEAAGGNCSRSNRNGTLKCYGGMNNLAALNQSGK
LSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLTIEYSGFTEFKFDFP
EMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPR
NFEQLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQML
MVMHYKLELKRQCQSHEDLRNCTCLMHHILPKTHIPLYTVNCSHLQFHRL
PDFLPDNTTTLVINDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLE
DTYWLQNFRLLNLRGNNLRKLHVYALDNALDDNENANLLLLSRNPWHCTC
KFGSRMRELLTKYKDIVRDAWNVSCTYRLDDDQLLAKVLTLSRQEMCNLS
VEGGTQIHPIDWLNGVLASLIFLILGKLAYDYYYYKYYGRVPWIVMKMP*

RE29709.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13234-PA 456 GF13234-PA 4..456 47..499 2061 85.7 Plus
Dana\GF22167-PA 594 GF22167-PA 220..584 132..499 272 26.7 Plus
Dana\GF23695-PA 1524 GF23695-PA 664..1024 131..427 156 23 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21029-PA 494 GG21029-PA 1..494 1..499 2393 94.2 Plus
Dere\GG12873-PA 605 GG12873-PA 231..595 132..499 277 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20542-PA 503 GH20542-PA 19..503 19..499 1737 69.4 Plus
Dgri\GH24532-PA 582 GH24532-PA 208..572 132..499 291 26.7 Plus
Dgri\GH14533-PA 1526 GH14533-PA 637..1010 141..427 162 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-PA 499 CG14485-PA 1..499 1..499 2692 100 Plus
hfw-PB 611 CG3095-PB 237..601 132..499 286 25.7 Plus
hfw-PA 611 CG3095-PA 237..601 132..499 286 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18811-PA 479 GI18811-PA 7..479 24..499 1878 72.4 Plus
Dmoj\GI16497-PA 596 GI16497-PA 222..586 132..499 256 25.8 Plus
Dmoj\GI13107-PA 1541 GI13107-PA 671..1031 131..427 157 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17679-PA 500 GL17679-PA 15..500 12..499 1952 76.9 Plus
Dper\GL14268-PA 578 GL14268-PA 234..568 132..499 228 24.7 Plus
Dper\GL24793-PA 1561 GL24793-PA 686..1046 131..427 156 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13020-PB 500 GA13020-PB 15..500 12..499 1953 77.1 Plus
Dpse\GA15922-PA 595 GA15922-PA 223..585 132..499 280 26.1 Plus
Dpse\GA20210-PA 1557 GA20210-PA 684..1044 131..427 157 23.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19959-PA 499 GM19959-PA 1..499 1..499 2607 97 Plus
Dsec\GM19159-PA 396 GM19159-PA 144..386 256..499 225 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25450-PA 439 GD25450-PA 1..418 1..418 2172 97.1 Plus
Dsim\GD25451-PA 54 GD25451-PA 1..54 446..499 299 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21838-PA 476 GJ21838-PA 30..476 51..499 1892 76.6 Plus
Dvir\GJ16041-PA 593 GJ16041-PA 219..583 132..499 298 27 Plus
Dvir\GJ13853-PA 1528 GJ13853-PA 665..1025 131..427 161 23.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21739-PA 472 GK21739-PA 1..472 27..499 1896 73.8 Plus
Dwil\GK25026-PA 516 GK25026-PA 142..506 132..499 265 25.6 Plus
Dwil\GK20408-PA 1498 GK20408-PA 669..1046 117..427 181 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13972-PA 498 GE13972-PA 1..498 1..499 2397 92 Plus
Dyak\GE16702-PA 615 GE16702-PA 241..605 132..499 267 25.4 Plus

RE29709.hyp Sequence

Translation from 267 to 1766

> RE29709.hyp
MPSGVFQKRPKAAETISLFCMILIRLSRAADDSHETSTLLATITTITTEI
IPMPDSGRSCFGWSSAPEAAGGNCSRSNRNGTLKCYGGMNNLAALNQSGK
LSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLTIEYSGFTEFKFDFP
EMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPR
NFEQLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQML
MVMHYKLELKRQCQSHEDLRNCTCLMHHILPKTHIPLYTVNCSHLQFHRL
PDFLPDNTTTLVINDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLE
DTYWLQNFRLLNLRGNNLRKLHVYALDNALDDNENANLLLLSRNPWHCTC
KFGSRMRELLTKYKDIVRDAWNVSCTYRLDDDQLLAKVLTLSRQEMCNLS
VEGGTQIHPIDWLNGVLASLIFLILGKLAYDYYYYKYYGRVPWIVMKMP*

RE29709.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-PA 499 CG14485-PA 1..499 1..499 2692 100 Plus
hfw-PB 611 CG3095-PB 237..601 132..499 286 25.7 Plus
hfw-PA 611 CG3095-PA 237..601 132..499 286 25.7 Plus