BDGP Sequence Production Resources |
Search the DGRC for RE29709
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 297 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | swi2-RA |
Protein status: | RE29709.pep: gold |
Preliminary Size: | 1446 |
Sequenced Size: | 2596 |
Gene | Date | Evidence |
---|---|---|
CG14485 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14485 | 2002-02-22 | Blastp of sequenced clone |
CG14485 | 2003-01-01 | Sim4 clustering to Release 3 |
swi2 | 2008-04-29 | Release 5.5 accounting |
swi2 | 2008-08-15 | Release 5.9 accounting |
swi2 | 2008-12-18 | 5.12 accounting |
2596 bp (2596 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084149
> RE29709.complete GCGTTTGAACTTCAAACGCGAGAAAAGTAGCACAGCGCGGATAGATACGC GGATGCGTGGTCATTAAACGACGGATCGCGGAAAAAAACGAATTTCTTGA TTATGTTTTTAGCATAGAGCAAATGGCAGACCCGAAACAATTCGATCGCA ATTGCCCAACCTGCTCCACCTGCGCGCGATCGTGACAATGGAATATTCTG ATTGAAAACAACGCAAGCCGGATAAACAGTCTCAAAATAAATATTTAAAA ATAACCCAAAAATTAATATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAA GCAGCCGAAACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCG TGCCGCGGATGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTA CCATAACCACCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTC GGTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAA CCGGAATGGAACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGC TGAACCAATCTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTT CTGTGCGGCTGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAA ATTGCCTCGCCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAAT TCAAATTCGACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCG TGGACGAATCTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCC GCTCAAGGTCTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGAC CACTGTTGCTGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCG TGGAACTGTACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGG ACGCCTGGTGGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATA AGGAACGCCAGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGA CAATGCCAATCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCA CATCTTACCCAAGACTCACATACCGCTCTATACGGTCAACTGTTCCCATT TGCAGTTCCATCGCTTGCCTGACTTTTTGCCGGACAACACCACCACTTTA GTTATAAACGATAATATGATCAGTGACATAAATCCGCTGCGGGACAATCC CCACTACCGCCACGTTGTGGATATGCAGCTGGAGAACAATCAGATATCCA ATGTGGACAACTTGGAGGACACTTACTGGCTGCAGAACTTCCGCTTGCTC AATCTGCGTGGCAACAATCTGCGCAAGCTTCATGTCTACGCCCTGGACAA CGCTCTGGATGACAACGAGAATGCCAATCTGCTATTGCTAAGTCGAAATC CCTGGCACTGCACCTGCAAGTTTGGCAGCAGAATGCGTGAGCTGTTGACG AAGTACAAGGACATCGTGCGTGATGCCTGGAATGTGAGCTGCACCTACCG CCTGGATGACGACCAGCTGCTGGCCAAGGTGCTGACCCTCAGTCGCCAGG AGATGTGCAATTTAAGCGTGGAGGGCGGCACTCAGATCCATCCCATCGAT TGGCTAAACGGGGTGCTGGCCAGCCTCATATTTCTTATCCTGGGCAAGCT TGCCTACGATTACTACTACTACAAGTATTACGGTCGAGTTCCTTGGATTG TGATGAAAATGCCCTAGTCTCTAGATCTAATGTTAAAGGAAGTTCAACTC GAAAGTATTTCTCAACCACCGACGATGGCTTTCGGTTTATTCTTGAAAAT CTACAAAAACAATACCGGTCTTTGTATCATATATGAATATTTATATATAT ATATATAAATAATGTTGTTTAGGTATTTATGTATGTATATTTAAGCTAGG TCAACGCAAAACTCTCAAAATAGTTGTTTTCCACACTATTGCACTGTTCA AATTGTTTTGTATGGTTAAAAACATTCGTTCTCACGTTCCTACATATTTG ACGGTTTATTTTAAGCATTTATCCTGCATTTAAATTGGCACAAAGCGCTT AATCTTTGATAATGAGAAACAGCTAAGATAGGTTTATGTTTGCAACTGGA CAGAACGGAATCTGTGTGAATTTTAGGTTAGTTACACATTATTCCATTTA AATGAATCTAATTTTGTATAATGTATATTTACAATTAAAAACCTTGATTT AAATTCTTTGGCTCTCGAAATCAGTGCAAAATGTCGCATCTTTTCGGTCA AAGCAAATGCAAAATGATTAAAATAATTGTATAGGATACAAGCTTATAAA TTAAACAACAGTGCTGGACATTGTAAACAAAGCTTAAAACATTTTTGTAC TTTACATCAATCAAGTGAAAATTCAAACAAGGCTTAATATTTCGCTGGCT GTAAGCGGCATATCTAAAATTCTTTTGGTTTCCTTCGTGAGTCCATTGAA TGGCGGTAAAAAAGGTCGGCAATGTTTCTTATAAATTTGTTGTATAAAAG TCGAAGTAAAATTTAGATCGTTTAAAATTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13577377..13578739 | 2580..1218 | 6740 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 13579041..13579525 | 1039..555 | 2425 | 100 | Minus |
chr2R | 21145070 | chr2R | 13582121..13582459 | 342..4 | 1665 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 13579687..13579901 | 554..340 | 1045 | 99.1 | Minus |
chr2R | 21145070 | chr2R | 13578803..13578983 | 1218..1038 | 890 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17690274..17691637 | 2581..1218 | 6820 | 100 | Minus |
2R | 25286936 | 2R | 17691942..17692426 | 1039..555 | 2425 | 100 | Minus |
2R | 25286936 | 2R | 17695010..17695348 | 342..4 | 1665 | 99.4 | Minus |
2R | 25286936 | 2R | 17692579..17692793 | 554..340 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 17691704..17691884 | 1218..1038 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17691473..17692836 | 2581..1218 | 6820 | 100 | Minus |
2R | 25260384 | 2R | 17693141..17693625 | 1039..555 | 2425 | 100 | Minus |
2R | 25260384 | 2R | 17696209..17696547 | 342..4 | 1665 | 99.4 | Minus |
2R | 25260384 | 2R | 17693778..17693992 | 554..340 | 1075 | 100 | Minus |
2R | 25260384 | 2R | 17692903..17693083 | 1218..1038 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 697..844 | 2016..1873 | 135 | 59.3 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1321..1580 | 2180..2427 | 128 | 54.2 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 925..1054 | 2305..2439 | 123 | 57 | Plus |
412 | 7567 | 412 412 7567bp | 3558..3636 | 2062..1987 | 116 | 67.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13577377..13578738 | 1219..2580 | 99 | <- | Minus |
chr2R | 13578803..13578982 | 1039..1218 | 99 | <- | Minus |
chr2R | 13579042..13579525 | 555..1038 | 100 | <- | Minus |
chr2R | 13579687..13579899 | 342..554 | 99 | <- | Minus |
chr2R | 13582122..13582462 | 1..341 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..1500 | 268..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..1500 | 268..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..1500 | 268..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..1500 | 268..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..1500 | 268..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..2580 | 1..2580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..2580 | 1..2580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 3..2582 | 1..2580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 1..2580 | 1..2580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
swi2-RA | 3..2582 | 1..2580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17690275..17691636 | 1219..2580 | 100 | <- | Minus |
2R | 17691704..17691883 | 1039..1218 | 100 | <- | Minus |
2R | 17691943..17692426 | 555..1038 | 100 | <- | Minus |
2R | 17692579..17692791 | 342..554 | 100 | <- | Minus |
2R | 17695011..17695351 | 1..341 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17690275..17691636 | 1219..2580 | 100 | <- | Minus |
2R | 17691704..17691883 | 1039..1218 | 100 | <- | Minus |
2R | 17691943..17692426 | 555..1038 | 100 | <- | Minus |
2R | 17692579..17692791 | 342..554 | 100 | <- | Minus |
2R | 17695011..17695351 | 1..341 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17690275..17691636 | 1219..2580 | 100 | <- | Minus |
2R | 17691704..17691883 | 1039..1218 | 100 | <- | Minus |
2R | 17691943..17692426 | 555..1038 | 100 | <- | Minus |
2R | 17692579..17692791 | 342..554 | 100 | <- | Minus |
2R | 17695011..17695351 | 1..341 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13580084..13580296 | 342..554 | 100 | <- | Minus |
arm_2R | 13582516..13582856 | 1..341 | 99 | Minus | |
arm_2R | 13577780..13579141 | 1219..2580 | 100 | <- | Minus |
arm_2R | 13579209..13579388 | 1039..1218 | 100 | <- | Minus |
arm_2R | 13579448..13579931 | 555..1038 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17691474..17692835 | 1219..2580 | 100 | <- | Minus |
2R | 17692903..17693082 | 1039..1218 | 100 | <- | Minus |
2R | 17693142..17693625 | 555..1038 | 100 | <- | Minus |
2R | 17693778..17693990 | 342..554 | 100 | <- | Minus |
2R | 17696210..17696550 | 1..341 | 99 | Minus |
Translation from 267 to 1766
> RE29709.pep MPSGVFQKRPKAAETISLFCMILIRLSRAADDSHETSTLLATITTITTEI IPMPDSGRSCFGWSSAPEAAGGNCSRSNRNGTLKCYGGMNNLAALNQSGK LSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLTIEYSGFTEFKFDFP EMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPR NFEQLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQML MVMHYKLELKRQCQSHEDLRNCTCLMHHILPKTHIPLYTVNCSHLQFHRL PDFLPDNTTTLVINDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLE DTYWLQNFRLLNLRGNNLRKLHVYALDNALDDNENANLLLLSRNPWHCTC KFGSRMRELLTKYKDIVRDAWNVSCTYRLDDDQLLAKVLTLSRQEMCNLS VEGGTQIHPIDWLNGVLASLIFLILGKLAYDYYYYKYYGRVPWIVMKMP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13234-PA | 456 | GF13234-PA | 4..456 | 47..499 | 2061 | 85.7 | Plus |
Dana\GF22167-PA | 594 | GF22167-PA | 220..584 | 132..499 | 272 | 26.7 | Plus |
Dana\GF23695-PA | 1524 | GF23695-PA | 664..1024 | 131..427 | 156 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21029-PA | 494 | GG21029-PA | 1..494 | 1..499 | 2393 | 94.2 | Plus |
Dere\GG12873-PA | 605 | GG12873-PA | 231..595 | 132..499 | 277 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20542-PA | 503 | GH20542-PA | 19..503 | 19..499 | 1737 | 69.4 | Plus |
Dgri\GH24532-PA | 582 | GH24532-PA | 208..572 | 132..499 | 291 | 26.7 | Plus |
Dgri\GH14533-PA | 1526 | GH14533-PA | 637..1010 | 141..427 | 162 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
swi2-PA | 499 | CG14485-PA | 1..499 | 1..499 | 2692 | 100 | Plus |
hfw-PB | 611 | CG3095-PB | 237..601 | 132..499 | 286 | 25.7 | Plus |
hfw-PA | 611 | CG3095-PA | 237..601 | 132..499 | 286 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18811-PA | 479 | GI18811-PA | 7..479 | 24..499 | 1878 | 72.4 | Plus |
Dmoj\GI16497-PA | 596 | GI16497-PA | 222..586 | 132..499 | 256 | 25.8 | Plus |
Dmoj\GI13107-PA | 1541 | GI13107-PA | 671..1031 | 131..427 | 157 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17679-PA | 500 | GL17679-PA | 15..500 | 12..499 | 1952 | 76.9 | Plus |
Dper\GL14268-PA | 578 | GL14268-PA | 234..568 | 132..499 | 228 | 24.7 | Plus |
Dper\GL24793-PA | 1561 | GL24793-PA | 686..1046 | 131..427 | 156 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13020-PB | 500 | GA13020-PB | 15..500 | 12..499 | 1953 | 77.1 | Plus |
Dpse\GA15922-PA | 595 | GA15922-PA | 223..585 | 132..499 | 280 | 26.1 | Plus |
Dpse\GA20210-PA | 1557 | GA20210-PA | 684..1044 | 131..427 | 157 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19959-PA | 499 | GM19959-PA | 1..499 | 1..499 | 2607 | 97 | Plus |
Dsec\GM19159-PA | 396 | GM19159-PA | 144..386 | 256..499 | 225 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25450-PA | 439 | GD25450-PA | 1..418 | 1..418 | 2172 | 97.1 | Plus |
Dsim\GD25451-PA | 54 | GD25451-PA | 1..54 | 446..499 | 299 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21838-PA | 476 | GJ21838-PA | 30..476 | 51..499 | 1892 | 76.6 | Plus |
Dvir\GJ16041-PA | 593 | GJ16041-PA | 219..583 | 132..499 | 298 | 27 | Plus |
Dvir\GJ13853-PA | 1528 | GJ13853-PA | 665..1025 | 131..427 | 161 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21739-PA | 472 | GK21739-PA | 1..472 | 27..499 | 1896 | 73.8 | Plus |
Dwil\GK25026-PA | 516 | GK25026-PA | 142..506 | 132..499 | 265 | 25.6 | Plus |
Dwil\GK20408-PA | 1498 | GK20408-PA | 669..1046 | 117..427 | 181 | 25.4 | Plus |
Translation from 267 to 1766
> RE29709.hyp MPSGVFQKRPKAAETISLFCMILIRLSRAADDSHETSTLLATITTITTEI IPMPDSGRSCFGWSSAPEAAGGNCSRSNRNGTLKCYGGMNNLAALNQSGK LSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLTIEYSGFTEFKFDFP EMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPR NFEQLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQML MVMHYKLELKRQCQSHEDLRNCTCLMHHILPKTHIPLYTVNCSHLQFHRL PDFLPDNTTTLVINDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLE DTYWLQNFRLLNLRGNNLRKLHVYALDNALDDNENANLLLLSRNPWHCTC KFGSRMRELLTKYKDIVRDAWNVSCTYRLDDDQLLAKVLTLSRQEMCNLS VEGGTQIHPIDWLNGVLASLIFLILGKLAYDYYYYKYYGRVPWIVMKMP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
swi2-PA | 499 | CG14485-PA | 1..499 | 1..499 | 2692 | 100 | Plus |
hfw-PB | 611 | CG3095-PB | 237..601 | 132..499 | 286 | 25.7 | Plus |
hfw-PA | 611 | CG3095-PA | 237..601 | 132..499 | 286 | 25.7 | Plus |