BDGP Sequence Production Resources |
Search the DGRC for RE29729
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 297 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | TfIIB-RA |
Protein status: | RE29729.pep: gold |
Preliminary Size: | 1702 |
Sequenced Size: | 1425 |
Gene | Date | Evidence |
---|---|---|
CG5193 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5193 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5193 | 2004-01-20 | Blastp of sequenced clone |
TfIIB | 2008-04-29 | Release 5.5 accounting |
TfIIB | 2008-08-15 | Release 5.9 accounting |
TfIIB | 2008-12-18 | 5.12 accounting |
1425 bp (1425 high quality bases) assembled on 2005-11-03
GenBank Submission: BT011459
> RE29729.complete AAAAGTCACATCACCAGTTGATGTGAGTATTAAAAAAATATATAGCTTAC AGAGTACAAATGGCATCGACATCGAGACTGGACAACAACAAGGTGTGCTG CTACGCACACCCCGAATCTCCGCTCATCGAGGACTACAGGGCTGGCGATA TGATTTGCTCCGAGTGTGGTCTGGTGGTTGGGGACCGCGTAATTGATGTG GGCTCCGAGTGGCGTACCTTTAGCAACGAGAAGAGCGGCGTGGATCCCAG TCGTGTCGGTGGACCGGAGAATCCGCTGCTCAGTGGCGGCGACTTGTCCA CCATAATTGGTCCGGGCACAGGATCCGCATCCTTTGACGCCTTTGGAGCA CCCAAGTACCAAAACAGACGCACCATGAGCAGCTCGGATCGCTCCCTCAT ATCAGCCTTTAAGGAGATATCCTCGATGGCCGATCGCATTAACTTGCCCA AAACCATTGTCGATCGGGCCAACAACTTGTTCAAACAGGTTCATGATGGA AAGAACCTCAAGGGTCGTTCCAACGATGCCAAGGCATCCGCTTGTCTGTA TATAGCTTGTCGCCAAGAAGGAGTTCCTCGCACATTCAAGGAAATATGTG CTGTCAGCAAGATCAGCAAAAAAGAGATTGGCCGTTGCTTTAAGCTAACA TTGAAGGCTCTCGAGACAAGTGTGGATCTCATAACCACTGCGGACTTCAT GTGCCGCTTCTGCGCCAACTTGGACCTGCCGAACATGGTCCAACGCGCTG CCACGCACATTGCAAAGAAAGCCGTCGAGATGGATATTGTACCGGGACGT TCGCCAATTTCTGTGGCCGCAGCCGCAATCTATATGGCCTCACAAGCATC CGAGCATAAGAGAAGCCAGAAGGAAATCGGTGATATAGCCGGTGTGGCCG ACGTCACCATCAGACAGTCCTACAAACTTATGTATCCGCACGCAGCTAAG CTTTTCCCCGAGGACTTTAAGTTTACCACTCCCATTGATCAGTTACCACA GATGTAATTCTTTTCGTAGATCCGATGCTCAATACTAACGCTAACGTTAA GTGAAGGAAAATTCCTAATTTAATCACAAATTACGATTTTATTAAATAAA GTTAGCATAACTAATATTCAAATAGAACTGTTGGACCAATCAGAACATAA TTAAATCATTGTTAAATTAATTATCTGAGTTAAACCCTTTCAGTTTTTGA ACTTTATTCCAATGATTCGTAATACTTTGCTTGCTTGATTTATTTTTACA TTTTTTGTGTATCTTTGGTATAATATAAGCTAATAACCAGAAACAAAAAT TGCACACTACGTTTATTTGCCAGTTATTTGCGAAAATAAGTTTAACAAAC CACGTACTCTGTTTATACATAAGCTTTAAGTAATTAGTAATAATATAAAT GGATAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10431075..10431760 | 723..1408 | 3400 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 10430309..10430724 | 75..490 | 2080 | 100 | Plus |
chr2L | 23010047 | chr2L | 10430776..10431012 | 487..723 | 1140 | 98.7 | Plus |
chr2L | 23010047 | chr2L | 10430179..10430253 | 2..76 | 375 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10432241..10432926 | 723..1408 | 3430 | 100 | Plus |
2L | 23513712 | 2L | 10431475..10431890 | 75..490 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 10431942..10432178 | 487..723 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10431345..10431419 | 2..76 | 375 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10432241..10432926 | 723..1408 | 3430 | 100 | Plus |
2L | 23513712 | 2L | 10431475..10431890 | 75..490 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 10431942..10432178 | 487..723 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10431345..10431419 | 2..76 | 375 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
blood | 7410 | blood BLOOD 7410bp | 6827..6960 | 1273..1409 | 118 | 56.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10430778..10431012 | 489..723 | 98 | -> | Plus |
chr2L | 10430178..10430253 | 1..76 | 98 | -> | Plus |
chr2L | 10430311..10430722 | 77..488 | 100 | -> | Plus |
chr2L | 10431076..10431760 | 724..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 1..948 | 60..1007 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 1..948 | 60..1007 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 1..948 | 60..1007 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 1..948 | 60..1007 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 1..948 | 60..1007 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 2..1408 | 2..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 2..1408 | 2..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RB | 7..1414 | 1..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RA | 2..1408 | 2..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIB-RB | 7..1414 | 1..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10431344..10431419 | 1..76 | 98 | -> | Plus |
2L | 10431477..10431888 | 77..488 | 100 | -> | Plus |
2L | 10431944..10432178 | 489..723 | 100 | -> | Plus |
2L | 10432242..10432926 | 724..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10431344..10431419 | 1..76 | 98 | -> | Plus |
2L | 10431477..10431888 | 77..488 | 100 | -> | Plus |
2L | 10431944..10432178 | 489..723 | 100 | -> | Plus |
2L | 10432242..10432926 | 724..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10431344..10431419 | 1..76 | 98 | -> | Plus |
2L | 10431477..10431888 | 77..488 | 100 | -> | Plus |
2L | 10431944..10432178 | 489..723 | 100 | -> | Plus |
2L | 10432242..10432926 | 724..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10431944..10432178 | 489..723 | 100 | -> | Plus |
arm_2L | 10431344..10431419 | 1..76 | 98 | -> | Plus |
arm_2L | 10431477..10431888 | 77..488 | 100 | -> | Plus |
arm_2L | 10432242..10432926 | 724..1409 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10431477..10431888 | 77..488 | 100 | -> | Plus |
2L | 10431944..10432178 | 489..723 | 100 | -> | Plus |
2L | 10432242..10432926 | 724..1409 | 99 | Plus | |
2L | 10431344..10431419 | 1..76 | 98 | -> | Plus |
Translation from 59 to 1006
> RE29729.pep MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSE WRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKY QNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNL KGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLTLKA LETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPI SVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP EDFKFTTPIDQLPQM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15790-PA | 315 | GF15790-PA | 1..315 | 1..315 | 1688 | 100 | Plus |
Dana\GF16885-PA | 665 | GF16885-PA | 17..263 | 24..286 | 156 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10133-PA | 315 | GG10133-PA | 1..315 | 1..315 | 1688 | 100 | Plus |
Dere\GG16780-PA | 668 | GG16780-PA | 17..263 | 24..286 | 159 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13607-PA | 315 | GH13607-PA | 1..315 | 1..315 | 1675 | 99 | Plus |
Dgri\GH17498-PA | 667 | GH17498-PA | 17..263 | 24..286 | 158 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIB-PB | 315 | CG5193-PB | 1..315 | 1..315 | 1626 | 100 | Plus |
TfIIB-PA | 315 | CG5193-PA | 1..315 | 1..315 | 1626 | 100 | Plus |
Brf-PB | 662 | CG31256-PB | 17..263 | 24..286 | 189 | 23.3 | Plus |
Brf-PA | 662 | CG31256-PA | 17..263 | 24..286 | 189 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20422-PA | 315 | GI20422-PA | 1..315 | 1..315 | 1684 | 99.7 | Plus |
Dmoj\GI22827-PA | 671 | GI22827-PA | 17..256 | 24..282 | 165 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19146-PA | 315 | GL19146-PA | 1..315 | 1..315 | 1688 | 100 | Plus |
Dper\GL23944-PA | 665 | GL23944-PA | 17..263 | 24..286 | 165 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27746-PB | 315 | GA27746-PB | 1..315 | 1..315 | 1688 | 100 | Plus |
Dpse\GA16127-PA | 665 | GA16127-PA | 17..263 | 24..286 | 165 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18405-PA | 315 | GM18405-PA | 1..315 | 1..315 | 1677 | 99.4 | Plus |
Dsec\GM15370-PA | 356 | GM15370-PA | 17..263 | 24..286 | 164 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23702-PA | 315 | GD23702-PA | 1..315 | 1..315 | 1688 | 100 | Plus |
Dsim\GD20238-PA | 662 | GD20238-PA | 17..263 | 24..286 | 155 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TfIIB-PA | 315 | GJ13764-PA | 1..315 | 1..315 | 1684 | 99.7 | Plus |
Dvir\GJ22828-PA | 666 | GJ22828-PA | 17..263 | 24..286 | 159 | 23.3 | Plus |
Translation from 59 to 1006
> RE29729.hyp MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSE WRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKY QNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNL KGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLTLKA LETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPI SVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP EDFKFTTPIDQLPQM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIB-PB | 315 | CG5193-PB | 1..315 | 1..315 | 1626 | 100 | Plus |
TfIIB-PA | 315 | CG5193-PA | 1..315 | 1..315 | 1626 | 100 | Plus |
Brf-PB | 662 | CG31256-PB | 17..263 | 24..286 | 189 | 23.3 | Plus |
Brf-PA | 662 | CG31256-PA | 17..263 | 24..286 | 189 | 23.3 | Plus |