BDGP Sequence Production Resources |
Search the DGRC for RE29832
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 298 |
Well: | 32 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pnn-RA |
Protein status: | RE29832.pep: gold |
Preliminary Size: | 912 |
Sequenced Size: | 1195 |
Gene | Date | Evidence |
---|---|---|
CG8383 | 2001-12-14 | Blastp of sequenced clone |
CG8383 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8383 | 2003-01-01 | Sim4 clustering to Release 3 |
Pnn | 2008-04-29 | Release 5.5 accounting |
Pnn | 2008-08-15 | Release 5.9 accounting |
Pnn | 2008-12-18 | 5.12 accounting |
1195 bp (1195 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071261
> RE29832.complete ATTGATTTTTTACTTTTATGAGCATCTAATTGTACCGACTTAAGTAAAAT AATTAATTAAACAAAACCTAACTGAAACGTGGGAACAATGGTGAATGACT CTGGTCTATCGACAGTGGACGACTTGGAGCAAAAACTGAATTCGGCCAAG CAGTCGCTGGTGATCCTAAATGAAAACATTCGCCGCATTGCTGGTCGCGT CCCCAAGGAATCCCTGCAGAGATCGGAAAAATTCAAATACACCCAAGATG GCAAGAAGAACGAGCACAATGGGGACCGACCGTTCCCCCGAAATGCAACA CCCGGTGGGGTCTTCAAAGACAAGCGGCGAATGTACGAAAGCAAGAATCC AATTTCCCGTTTCCCAATCGAAGAAAACGAGGGTCGTCCGCCACGGATTA ACTCGCGGGTCATCCGGGAGATGCCAACTAAAAAGGAGATTGTCGAGGCA CAGGGCACAGACTCTGAGTCGAGGGCCAGGAATCGCAGGATGTTCGGATC GCTGTTGGGAACCCTACAGAAGTTCTGTCAGGAGGAATCGCGACTGAAGA GCAAGGAGGATAAAAAGGCTGAGATCGATAGGAAGGTGGAAAAGCAGGAA CTGCAGGAAAGAGCGATGCTGAGGAAACAGCGTGAAACACTATTCTTAGA TAGGAAAAAAAAGCAATTCGAGATCCGTAGATTAGAGTACAAAATGGCCA GAATGAAGGACTTCAAGGTCTGGGAAGCAACTATGTTGAATGCGAAAAAT AACATCCGAACAAAAACGAAACCACATCTGTTCTTTAGGCCAAAAGTGCA TTCGCCTAGAACGGAAAAATTGTTGAGCAAAAGCAAAAGTGAAGCTGATG TGTTTATAGAATTCCGGCGCGAAGAATTGGAAGTTGAGCTTAAAAACTTG GAGAACATGAACTTTGGGAAGATGGAAGACGATACTGCAATAGACGAAAG TTTCTATGAAGAGCCTGACGACGAAGAGCAGTTGGATAAGTGTAAGTAAA CTTCAGTTTGCACTAGGGCTTGAAATATGATCGTGCGGATATCGCTGTGT AGGGCAATTGGGTTTCAATTTATAAAACTTATTTATGAAACTTTAATTTA TAATACAAAAACCAGATCTTAAGCAAATAAATTACAATGCGGTGATTACA TTTAAAAGTTATATCGTATTTATCAACTCAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5566755..5566975 | 1..221 | 99 | -> | Plus |
chr3R | 5567036..5567993 | 222..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..912 | 88..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..912 | 88..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..912 | 88..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..912 | 88..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..912 | 88..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..1179 | 1..1179 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..1179 | 1..1179 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 24..1202 | 1..1179 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 1..1179 | 1..1179 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pnn-RA | 24..1202 | 1..1179 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9740922..9741142 | 1..221 | 99 | -> | Plus |
3R | 9741199..9742156 | 222..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9740922..9741142 | 1..221 | 99 | -> | Plus |
3R | 9741199..9742156 | 222..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9740922..9741142 | 1..221 | 99 | -> | Plus |
3R | 9741199..9742156 | 222..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5566644..5566864 | 1..221 | 99 | -> | Plus |
arm_3R | 5566921..5567878 | 222..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9481753..9481973 | 1..221 | 99 | -> | Plus |
3R | 9482030..9482987 | 222..1179 | 100 | Plus |
Translation from 87 to 998
> RE29832.hyp MVNDSGLSTVDDLEQKLNSAKQSLVILNENIRRIAGRVPKESLQRSEKFK YTQDGKKNEHNGDRPFPRNATPGGVFKDKRRMYESKNPISRFPIEENEGR PPRINSRVIREMPTKKEIVEAQGTDSESRARNRRMFGSLLGTLQKFCQEE SRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLE YKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSK SEADVFIEFRREELEVELKNLENMNFGKMEDDTAIDESFYEEPDDEEQLD KCK*
Translation from 87 to 998
> RE29832.pep MVNDSGLSTVDDLEQKLNSAKQSLVILNENIRRIAGRVPKESLQRSEKFK YTQDGKKNEHNGDRPFPRNATPGGVFKDKRRMYESKNPISRFPIEENEGR PPRINSRVIREMPTKKEIVEAQGTDSESRARNRRMFGSLLGTLQKFCQEE SRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLE YKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSK SEADVFIEFRREELEVELKNLENMNFGKMEDDTAIDESFYEEPDDEEQLD KCK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11692-PA | 311 | GF11692-PA | 1..299 | 1..299 | 1150 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17059-PA | 302 | GG17059-PA | 1..302 | 1..303 | 1519 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19578-PA | 331 | GH19578-PA | 1..281 | 1..288 | 781 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pnn-PA | 303 | CG8383-PA | 1..303 | 1..303 | 1554 | 100 | Plus |
Pnn-PB | 307 | CG8383-PB | 1..301 | 1..301 | 1540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23628-PA | 301 | GI23628-PA | 1..301 | 1..303 | 784 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21956-PA | 289 | GL21956-PA | 1..283 | 1..296 | 967 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21034-PA | 289 | GA21034-PA | 1..283 | 1..296 | 969 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23830-PA | 303 | GM23830-PA | 1..303 | 1..303 | 1534 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11168-PA | 300 | GJ11168-PA | 8..278 | 8..286 | 751 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13914-PA | 304 | GK13914-PA | 8..286 | 6..288 | 792 | 56.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25978-PA | 302 | GE25978-PA | 1..302 | 1..303 | 1518 | 96 | Plus |