Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE29909.complete Sequence
1380 bp (1380 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071262
> RE29909.complete
AGATTGGTCAAAGTGCTGTCATAATTCATCAATCGAGTTCGCGAATTGTA
TTCTACGGAGTGTTAACATGTAAATGTGATACGGGAAATAACAAATATTC
ATTTTATTCAAACGAGACACATTATTTTAATAAGTTCTTGCATAAGAAAT
CATATCGCAACCAGATACTCAACATTACCAACAATTAAAATGTAGTAGAT
ATGCTGAACTGTACACCTTTCGTTGCAGAAGAAACGCGAGCAAGTGAGGC
ACTGAATGAAATGTAAAAGCTATTAACTCCCTAATTTAGTTCATATGAAA
AGTGGCAACCATGGCCTAAGGCAATCTAAATTCCACTGGAAGCACATTCT
TCCATAAATGGTTAATCCGAAATAGCCATCCGTTATACCCGTAATACCCT
GTAGCAAGTAACATAAGCAGGCGATGTTTCACCTACATAGCAAAGTGTAC
ACAGATAACATAAACACACCGAACAGAACAGGAAAACAAGAAGGAGCCGA
AGGAGAAGGAATGGTGTGCACGTTCATTGCATCAGACGTCTAAATCGAAA
TCGCAACGAATTCAATGCTTACTTAACCCACGCCGCAGTGCTAATTCCGT
CAACTTACATTTAACCGCCCACAATTTTAGCACTCACATATTGCAAGTGG
GCGGATTATTGTGATTGGCACCGCCCAGCTGGTGGAGTAGATGCACTAGT
AACGAAACGCTATCAACCGGAAGTGACGACAACAACGGACAACGCCTAAA
AGCATACTGTGGAATTTTATTTCTTTATTTGTCACGCTTGCTTGATTTTA
TTTTTAATTATCCGGCGCTGGCTGTGAAAATGAATTCCGCGAATGGCAAA
CCAACATGAACAACCATAAAGAAATGCAAAGTCAGCCAAAGCAGCATCAA
TCCCGGCTGGGTGGCCACCGAGATCGTTCCGGACGAAACGAAGGCCAAGC
TGGGCGAGGTAATCCTCCAGGCGGACGACGTCGCTCAGGCTGTACTGTAC
GCCCTATCCACGCCACCGCACACTCAGGTGGAGCAGATAACGCTGAGGGC
GGTGGGCGAATATTTCTGATAGCCCGACAACACAACGCAGCCCCCGAGAT
TAGGCAATCGACTTGCAGTGGAACAGTAAAAATCAAATAAAGGCGAACGA
CCCGATCCGACATGGCCACATGACACACGGCGAGATACTCACATACCCCC
CCACATTTGGTTTGCCACAAACTGTTGGCACTCACCTCGTTTCGTTTTAT
TTTTATTATTGTGTTCAGTTACTACGTAGTATATACATATATGTATCTAT
ATATGGCATATGTGTTCAGCACCTTTCCTCAAGCCAAATAAATAATTCAG
TTTTGTGAACTAACAAAAAAAAAAAAAAAA
RE29909.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10962-RA | 1360 | CG10962-RA | 1..1360 | 1..1359 | 6760 | 99.9 | Plus |
CG10962.a | 1512 | CG10962.a | 153..1512 | 1..1359 | 6760 | 99.9 | Plus |
CG10962-RB | 1490 | CG10962-RB | 751..1225 | 893..1366 | 2335 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 8864613..8865085 | 1364..893 | 2255 | 98.9 | Minus |
chrX | 22417052 | chrX | 8871179..8871557 | 892..514 | 1895 | 100 | Minus |
chrX | 22417052 | chrX | 8940206..8940522 | 514..196 | 1500 | 98.7 | Minus |
chrX | 22417052 | chrX | 8940574..8940777 | 204..1 | 990 | 99 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8972906..8973380 | 1366..893 | 2325 | 99.8 | Minus |
X | 23542271 | X | 8979454..8979832 | 892..514 | 1895 | 100 | Minus |
X | 23542271 | X | 9048414..9048732 | 514..196 | 1595 | 100 | Minus |
X | 23542271 | X | 9048784..9048987 | 204..1 | 1005 | 99.5 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 8981004..8981478 | 1366..893 | 2335 | 99.7 | Minus |
X | 23527363 | X | 8987552..8987930 | 892..514 | 1895 | 100 | Minus |
X | 23527363 | X | 9056512..9056830 | 514..196 | 1595 | 100 | Minus |
X | 23527363 | X | 9056882..9057085 | 204..1 | 1005 | 99.5 | Minus |
Blast to na_te.dros performed on 2019-03-15 16:22:40 has no hits.
RE29909.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:23:20 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 8864613..8865085 | 893..1364 | 98 | <- | Minus |
chrX | 8871179..8871556 | 515..892 | 100 | <- | Minus |
chrX | 8940206..8940519 | 199..514 | 98 | <- | Minus |
chrX | 8940580..8940777 | 1..198 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:42:12 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..285 | 856..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:21 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..285 | 856..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:01:36 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 569..750 | 886..1069 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:06 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..285 | 856..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:20 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 569..750 | 886..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:42:11 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..1360 | 1..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:21 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..1360 | 1..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:36 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..1074 | 886..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:06 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RA | 1..1360 | 1..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:20 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10962-RB | 597..1074 | 886..1364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:20 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8972908..8973380 | 893..1364 | 99 | <- | Minus |
X | 8979454..8979831 | 515..892 | 100 | <- | Minus |
X | 9048414..9048729 | 199..514 | 100 | <- | Minus |
X | 9048790..9048987 | 1..198 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:20 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8972908..8973380 | 893..1364 | 99 | <- | Minus |
X | 8979454..8979831 | 515..892 | 100 | <- | Minus |
X | 9048414..9048729 | 199..514 | 100 | <- | Minus |
X | 9048790..9048987 | 1..198 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:20 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8972908..8973380 | 893..1364 | 99 | <- | Minus |
X | 8979454..8979831 | 515..892 | 100 | <- | Minus |
X | 9048414..9048729 | 199..514 | 100 | <- | Minus |
X | 9048790..9048987 | 1..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:36 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8873487..8873864 | 515..892 | 100 | <- | Minus |
arm_X | 8866941..8867413 | 893..1364 | 99 | <- | Minus |
arm_X | 8942447..8942762 | 199..514 | 100 | <- | Minus |
arm_X | 8942823..8943020 | 1..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:08 Download gff for
RE29909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8981006..8981478 | 893..1364 | 99 | <- | Minus |
X | 8987552..8987929 | 515..892 | 100 | <- | Minus |
X | 9056512..9056827 | 199..514 | 100 | <- | Minus |
X | 9056888..9057085 | 1..198 | 100 | | Minus |
RE29909.hyp Sequence
Translation from 855 to 1139
> RE29909.hyp
MNNHKEMQSQPKQHQSRLGGHRDRSGRNEGQAGRGNPPGGRRRSGCTVRP
IHATAHSGGADNAEGGGRIFLIARQHNAAPEIRQSTCSGTVKIK*
Sequence RE29909.hyp has no blast hits.
RE29909.pep Sequence
Translation from 855 to 1139
> RE29909.pep
MNNHKEMQSQPKQHQSRLGGHRDRSGRNEGQAGRGNPPGGRRRSGCTVRP
IHATAHSGGADNAEGGGRIFLIARQHNAAPEIRQSTCSGTVKIK*
Sequence RE29909.pep has no blast hits.