Clone RE29909 Report

Search the DGRC for RE29909

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:299
Well:9
Vector:pFlc-1
Associated Gene/TranscriptCG10962-RA
Protein status:RE29909.pep: wuzgold
Preliminary Size:516
Sequenced Size:1380

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10962 2001-12-17 Blastp of sequenced clone
CG12662 2002-01-01 Sim4 clustering to Release 2
CG10962 2003-01-01 Sim4 clustering to Release 3
CG10962 2008-04-29 Release 5.5 accounting
CG10962 2008-08-15 Release 5.9 accounting
CG10962 2008-12-18 5.12 accounting

Clone Sequence Records

RE29909.complete Sequence

1380 bp (1380 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071262

> RE29909.complete
AGATTGGTCAAAGTGCTGTCATAATTCATCAATCGAGTTCGCGAATTGTA
TTCTACGGAGTGTTAACATGTAAATGTGATACGGGAAATAACAAATATTC
ATTTTATTCAAACGAGACACATTATTTTAATAAGTTCTTGCATAAGAAAT
CATATCGCAACCAGATACTCAACATTACCAACAATTAAAATGTAGTAGAT
ATGCTGAACTGTACACCTTTCGTTGCAGAAGAAACGCGAGCAAGTGAGGC
ACTGAATGAAATGTAAAAGCTATTAACTCCCTAATTTAGTTCATATGAAA
AGTGGCAACCATGGCCTAAGGCAATCTAAATTCCACTGGAAGCACATTCT
TCCATAAATGGTTAATCCGAAATAGCCATCCGTTATACCCGTAATACCCT
GTAGCAAGTAACATAAGCAGGCGATGTTTCACCTACATAGCAAAGTGTAC
ACAGATAACATAAACACACCGAACAGAACAGGAAAACAAGAAGGAGCCGA
AGGAGAAGGAATGGTGTGCACGTTCATTGCATCAGACGTCTAAATCGAAA
TCGCAACGAATTCAATGCTTACTTAACCCACGCCGCAGTGCTAATTCCGT
CAACTTACATTTAACCGCCCACAATTTTAGCACTCACATATTGCAAGTGG
GCGGATTATTGTGATTGGCACCGCCCAGCTGGTGGAGTAGATGCACTAGT
AACGAAACGCTATCAACCGGAAGTGACGACAACAACGGACAACGCCTAAA
AGCATACTGTGGAATTTTATTTCTTTATTTGTCACGCTTGCTTGATTTTA
TTTTTAATTATCCGGCGCTGGCTGTGAAAATGAATTCCGCGAATGGCAAA
CCAACATGAACAACCATAAAGAAATGCAAAGTCAGCCAAAGCAGCATCAA
TCCCGGCTGGGTGGCCACCGAGATCGTTCCGGACGAAACGAAGGCCAAGC
TGGGCGAGGTAATCCTCCAGGCGGACGACGTCGCTCAGGCTGTACTGTAC
GCCCTATCCACGCCACCGCACACTCAGGTGGAGCAGATAACGCTGAGGGC
GGTGGGCGAATATTTCTGATAGCCCGACAACACAACGCAGCCCCCGAGAT
TAGGCAATCGACTTGCAGTGGAACAGTAAAAATCAAATAAAGGCGAACGA
CCCGATCCGACATGGCCACATGACACACGGCGAGATACTCACATACCCCC
CCACATTTGGTTTGCCACAAACTGTTGGCACTCACCTCGTTTCGTTTTAT
TTTTATTATTGTGTTCAGTTACTACGTAGTATATACATATATGTATCTAT
ATATGGCATATGTGTTCAGCACCTTTCCTCAAGCCAAATAAATAATTCAG
TTTTGTGAACTAACAAAAAAAAAAAAAAAA

RE29909.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10962-RA 1360 CG10962-RA 1..1360 1..1359 6760 99.9 Plus
CG10962.a 1512 CG10962.a 153..1512 1..1359 6760 99.9 Plus
CG10962-RB 1490 CG10962-RB 751..1225 893..1366 2335 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8864613..8865085 1364..893 2255 98.9 Minus
chrX 22417052 chrX 8871179..8871557 892..514 1895 100 Minus
chrX 22417052 chrX 8940206..8940522 514..196 1500 98.7 Minus
chrX 22417052 chrX 8940574..8940777 204..1 990 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8972906..8973380 1366..893 2325 99.8 Minus
X 23542271 X 8979454..8979832 892..514 1895 100 Minus
X 23542271 X 9048414..9048732 514..196 1595 100 Minus
X 23542271 X 9048784..9048987 204..1 1005 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8981004..8981478 1366..893 2335 99.7 Minus
X 23527363 X 8987552..8987930 892..514 1895 100 Minus
X 23527363 X 9056512..9056830 514..196 1595 100 Minus
X 23527363 X 9056882..9057085 204..1 1005 99.5 Minus
Blast to na_te.dros performed on 2019-03-15 16:22:40 has no hits.

RE29909.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:23:20 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8864613..8865085 893..1364 98 <- Minus
chrX 8871179..8871556 515..892 100 <- Minus
chrX 8940206..8940519 199..514 98 <- Minus
chrX 8940580..8940777 1..198 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:42:12 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..285 856..1140 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:21 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..285 856..1140 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:01:36 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 569..750 886..1069 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:06 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..285 856..1140 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:20 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 569..750 886..1069 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:42:11 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..1360 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:21 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..1360 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:36 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..1074 886..1364 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:06 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RA 1..1360 1..1359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:20 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
CG10962-RB 597..1074 886..1364 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:20 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
X 8972908..8973380 893..1364 99 <- Minus
X 8979454..8979831 515..892 100 <- Minus
X 9048414..9048729 199..514 100 <- Minus
X 9048790..9048987 1..198 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:20 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
X 8972908..8973380 893..1364 99 <- Minus
X 8979454..8979831 515..892 100 <- Minus
X 9048414..9048729 199..514 100 <- Minus
X 9048790..9048987 1..198 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:23:20 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
X 8972908..8973380 893..1364 99 <- Minus
X 8979454..8979831 515..892 100 <- Minus
X 9048414..9048729 199..514 100 <- Minus
X 9048790..9048987 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:36 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8873487..8873864 515..892 100 <- Minus
arm_X 8866941..8867413 893..1364 99 <- Minus
arm_X 8942447..8942762 199..514 100 <- Minus
arm_X 8942823..8943020 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:08 Download gff for RE29909.complete
Subject Subject Range Query Range Percent Splice Strand
X 8981006..8981478 893..1364 99 <- Minus
X 8987552..8987929 515..892 100 <- Minus
X 9056512..9056827 199..514 100 <- Minus
X 9056888..9057085 1..198 100   Minus

RE29909.hyp Sequence

Translation from 855 to 1139

> RE29909.hyp
MNNHKEMQSQPKQHQSRLGGHRDRSGRNEGQAGRGNPPGGRRRSGCTVRP
IHATAHSGGADNAEGGGRIFLIARQHNAAPEIRQSTCSGTVKIK*
Sequence RE29909.hyp has no blast hits.

RE29909.pep Sequence

Translation from 855 to 1139

> RE29909.pep
MNNHKEMQSQPKQHQSRLGGHRDRSGRNEGQAGRGNPPGGRRRSGCTVRP
IHATAHSGGADNAEGGGRIFLIARQHNAAPEIRQSTCSGTVKIK*
Sequence RE29909.pep has no blast hits.