BDGP Sequence Production Resources |
Search the DGRC for RE29929
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 299 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12567-RD |
Protein status: | RE29929.pep: gold |
Sequenced Size: | 1970 |
Gene | Date | Evidence |
---|---|---|
CG12567-RD | 2011-02-22 | Manual selection by Sue Celniker |
1970 bp assembled on 2011-06-21
GenBank Submission: BT128756.1
> RE29929.complete ATAAGTATTAAATAACTTAGGAAGGTTTGCAATGGCTGTCTCGTTGATGT GGTTGTACATACGTATTCATAAGTGTGACATTCGTCCATTTGTGGTAGAG GGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAACATCTCGAAAA GTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTT TGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACGAGCGCACTGAGCAA CTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATT ACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTC TACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTAC GGCGTCGATATAAACGGTTACGTAAGACATCCGACGCTTGGACTATGCAT TTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGG ACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACA GCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAA GAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAAAGCCGACAAG GACTTTTTCCCAATACCGAATATGTTTTCGACTTAGAGCTACCGCTTGAC TTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAAC AGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGATTTCAAGACAACTT CAGCGCCTGTGGTGATTGATTTTCTTATCCGACACGGTCACATAACAGCA GATGATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGCACGTGCCCTT ACAGTCCATATATACGTACAAGACACGCTTTGAGCAATCCATAAAACAAC CTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACTGTGCAATATTTCAG AAAATATCAATGGAGAATGGGCACAAGAAGGCGAATTAATTTGAAATGCT GTATAGTCATAAAAAAAATAATGAGGCATGGCTACAAAGAAATATTAATG CAAGCTCAAAACAAAATAAAAGTGATTGTAATTGAAGTGAACTTTCTGAA GCCCAGGCTAGTCTCCAAGAGGTAAACATTAATGGACGTATTGCCCTTCC CTAGAAGTCTGATTATAAAATGAAGTTTCGTGTCAGCAAAGTTCATAAAA AATACGATTTTGTTTTAAGCTTTTTTTTATTTCACAATATCGGTCAGCAT TAAGAAGTAAAATTATTACAAATTATCAAATATCACTTCATTGTGTAGTC TACTAACAGCTGTGAAGAGTTTGTAATGCACTTAGAATTTTAAAAGTAGT GTTGAGCTGGTTTGTATTTGAATAATGAACAAAATAATGACAAATTCTAA AATTCTGCTAAAAAATATTAGGAGGTTATTATGATGTTAAGGTAGATTAA GCATAATGTTTTCTTGTTTAAGGATATGCGTTGGTTTGGGCTTTATTTGT TGTTTTCGTTGGTATAAACAATCAAATTTTAACTATATTTTTAAATATTA ATTGTTATTATATAACCTCCCTTATACTTGTCAAACATGGAGAAAAATCC CAGAACTCGTTTTTTTTCAAAATACTAAATTTACTTAAACTGCAATATTA TAGCAGTGTGAATTAACTATAGTGTATGTATATTAATATATTATATTACA TCTTTTAATATATGTAGTAACCAAAGTGCTCAAAATTAAGAGATACATTA TAGGTAGGATAATGTTACTTATGTACATTTTTGTAACCTAATACAATATT TAATAAAGTAAATATATAAAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2LHet | 368865 | chr2LHet | 19634..20652 | 1876..857 | 5050 | 99.9 | Minus |
chr2LHet | 368865 | chr2LHet | 20724..21388 | 857..193 | 3310 | 99.8 | Minus |
chrU | 10048995 | chrU | 3352020..3352395 | 1876..1500 | 1690 | 97.6 | Minus |
chr2LHet | 368865 | chr2LHet | 7917..8293 | 1876..1500 | 1680 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 1702..2077 | 1876..1500 | 1675 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 4916..5291 | 1876..1500 | 1675 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 16268..16626 | 1859..1500 | 1605 | 97.5 | Minus |
chrU | 10048995 | chrU | 3348952..3349187 | 1733..1500 | 1100 | 98.7 | Minus |
chr2LHet | 368865 | chr2LHet | 179478..179715 | 857..620 | 1055 | 96.2 | Minus |
chr2LHet | 368865 | chr2LHet | 271098..271335 | 620..857 | 1055 | 96.2 | Plus |
chr2L | 23010047 | chr2L | 22966700..22966943 | 1620..1860 | 860 | 93 | Plus |
chr2LHet | 368865 | chr2LHet | 176013..176179 | 1075..910 | 695 | 95.8 | Minus |
chr2LHet | 368865 | chr2LHet | 175838..176014 | 1276..1103 | 685 | 93.8 | Minus |
chr2LHet | 368865 | chr2LHet | 21436..21570 | 197..63 | 675 | 100 | Minus |
chrU | 10048995 | chrU | 3348058..3348140 | 1825..1743 | 370 | 96.4 | Minus |
chr2LHet | 368865 | chr2LHet | 32397..32462 | 66..1 | 330 | 100 | Minus |
chrU | 10048995 | chrU | 3343916..3343960 | 1876..1832 | 210 | 97.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23161116..23162140 | 1882..857 | 5080 | 99.9 | Minus |
2L | 23513712 | 2L | 23162212..23162876 | 857..193 | 3310 | 99.8 | Minus |
2L | 23513712 | 2L | 23140222..23140603 | 1882..1500 | 1720 | 97.7 | Minus |
2L | 23513712 | 2L | 23149437..23149819 | 1882..1500 | 1710 | 97.4 | Minus |
2L | 23513712 | 2L | 23143222..23143603 | 1882..1500 | 1705 | 97.4 | Minus |
2L | 23513712 | 2L | 23146436..23146817 | 1882..1500 | 1705 | 97.4 | Minus |
2L | 23513712 | 2L | 23157794..23158152 | 1859..1500 | 1605 | 97.5 | Minus |
2L | 23513712 | 2L | 23137160..23137395 | 1733..1500 | 1100 | 98.7 | Minus |
2L | 23513712 | 2L | 23323955..23324192 | 857..620 | 1055 | 96.2 | Minus |
2L | 23513712 | 2L | 23415916..23416153 | 620..857 | 1055 | 96.2 | Plus |
2L | 23513712 | 2L | 23075465..23075708 | 1620..1860 | 860 | 93 | Plus |
2L | 23513712 | 2L | 23320471..23320637 | 1075..910 | 695 | 95.8 | Minus |
2L | 23513712 | 2L | 23320296..23320472 | 1276..1103 | 685 | 93.8 | Minus |
2L | 23513712 | 2L | 23162924..23163058 | 197..63 | 675 | 100 | Minus |
2L | 23513712 | 2L | 23136266..23136348 | 1825..1743 | 370 | 96.4 | Minus |
2L | 23513712 | 2L | 23173888..23173953 | 66..1 | 330 | 100 | Minus |
2L | 23513712 | 2L | 23132119..23132169 | 1882..1832 | 240 | 98 | Minus |
Y | 3667352 | Y | 3159784..3159887 | 1862..1965 | 220 | 80.8 | Plus |
X | 23542271 | X | 6653048..6653099 | 1862..1913 | 215 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23161116..23162140 | 1882..857 | 5090 | 99.9 | Minus |
2L | 23513712 | 2L | 23162212..23162876 | 857..193 | 3310 | 99.8 | Minus |
2L | 23513712 | 2L | 23140222..23140603 | 1882..1500 | 1740 | 97.6 | Minus |
2L | 23513712 | 2L | 23149437..23149819 | 1882..1500 | 1730 | 97.4 | Minus |
2L | 23513712 | 2L | 23146436..23146817 | 1882..1500 | 1725 | 97.4 | Minus |
2L | 23513712 | 2L | 23143222..23143603 | 1882..1500 | 1725 | 97.4 | Minus |
2L | 23513712 | 2L | 23157794..23158152 | 1859..1500 | 1625 | 97.5 | Minus |
2L | 23513712 | 2L | 23137160..23137395 | 1733..1500 | 1110 | 98.7 | Minus |
2L | 23513712 | 2L | 23415916..23416153 | 620..857 | 1055 | 96.2 | Plus |
2L | 23513712 | 2L | 23323955..23324192 | 857..620 | 1055 | 96.2 | Minus |
2L | 23513712 | 2L | 23075465..23075708 | 1620..1860 | 890 | 93 | Plus |
2L | 23513712 | 2L | 23320471..23320637 | 1075..910 | 705 | 95.8 | Minus |
2L | 23513712 | 2L | 23320296..23320472 | 1276..1103 | 695 | 93.7 | Minus |
2L | 23513712 | 2L | 23162924..23163058 | 197..63 | 675 | 100 | Minus |
2L | 23513712 | 2L | 23136266..23136348 | 1825..1743 | 370 | 96.3 | Minus |
2L | 23513712 | 2L | 23173888..23173953 | 66..1 | 330 | 100 | Minus |
2L | 23513712 | 2L | 23132119..23132169 | 1882..1832 | 240 | 98 | Minus |
Y | 3410481 | Y | 3006254..3006357 | 1862..1965 | 220 | 80.7 | Plus |
X | 23527363 | X | 6661146..6661197 | 1862..1913 | 215 | 94.2 | Plus |
2L | 23513712 | 2L | 23154454..23154488 | 1882..1848 | 160 | 97.1 | Minus |
2L | 23513712 | 2L | 23152651..23152693 | 1882..1840 | 155 | 90.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 328..364 | 1441..1478 | 124 | 84.2 | Plus |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 361..527 | 1057..1220 | 116 | 53.9 | Plus |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 2456..2494 | 1641..1679 | 114 | 76.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2LHet | 19634..20651 | 858..1876 | 99 | <- | Minus |
chr2LHet | 20724..21384 | 197..857 | 99 | <- | Minus |
chr2LHet | 21437..21570 | 63..196 | 100 | <- | Minus |
chr2LHet | 32401..32462 | 1..62 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RD | 1..1008 | 32..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RD | 1..1008 | 32..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RD | 1..1008 | 32..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RD | 1..1875 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RD | 1..1875 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RD | 1..1875 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 858..1876 | 99 | <- | Minus |
2L | 23162212..23162872 | 197..857 | 99 | <- | Minus |
2L | 23162925..23163058 | 63..196 | 100 | <- | Minus |
2L | 23173892..23173953 | 1..62 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 858..1876 | 99 | <- | Minus |
2L | 23162212..23162872 | 197..857 | 99 | <- | Minus |
2L | 23162925..23163058 | 63..196 | 100 | <- | Minus |
2L | 23173892..23173953 | 1..62 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 858..1876 | 99 | <- | Minus |
2L | 23162212..23162872 | 197..857 | 99 | <- | Minus |
2L | 23162925..23163058 | 63..196 | 100 | <- | Minus |
2L | 23173892..23173953 | 1..62 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2LHet | 19633..20650 | 858..1876 | 99 | <- | Minus |
2LHet | 20723..21383 | 197..857 | 99 | <- | Minus |
2LHet | 21436..21569 | 63..196 | 100 | <- | Minus |
2LHet | 32403..32464 | 1..62 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 858..1876 | 99 | <- | Minus |
2L | 23162212..23162872 | 197..857 | 99 | <- | Minus |
2L | 23162925..23163058 | 63..196 | 100 | <- | Minus |
2L | 23173892..23173953 | 1..62 | 100 | Minus |
Translation from 31 to 1038
> RE29929.hyp MAVSLMWLYIRIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCIRAC EQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEV KADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQRSNTKE TWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVSAGCVSF YFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDCVERVFT SDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIYTYKTRF EQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-PD | 335 | CG12567-PD | 1..335 | 1..335 | 1770 | 100 | Plus |
CG12567-PF | 341 | CG12567-PF | 16..341 | 10..335 | 1714 | 99.4 | Plus |
CG12567-PG | 349 | CG12567-PG | 26..349 | 12..335 | 1713 | 100 | Plus |
CG12567-PA | 349 | CG12567-PA | 26..349 | 12..335 | 1713 | 100 | Plus |
CG12567-PC | 70 | CG12567-PC | 26..69 | 12..55 | 236 | 100 | Plus |
Translation from 31 to 1038
> RE29929.pep MAVSLMWLYIRIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCIRAC EQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEV KADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQRSNTKE TWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVSAGCVSF YFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDCVERVFT SDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIYTYKTRF EQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15848-PA | 326 | GF15848-PA | 5..323 | 13..334 | 1467 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21418-PA | 2299 | GG21418-PA | 2013..2299 | 49..335 | 1475 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13287-PA | 337 | GH13287-PA | 10..330 | 12..331 | 1411 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-PD | 335 | CG12567-PD | 1..335 | 1..335 | 1770 | 100 | Plus |
CG12567-PF | 341 | CG12567-PF | 16..341 | 10..335 | 1714 | 99.4 | Plus |
CG12567-PG | 349 | CG12567-PG | 26..349 | 12..335 | 1713 | 100 | Plus |
CG12567-PA | 349 | CG12567-PA | 26..349 | 12..335 | 1713 | 100 | Plus |
CG12567-PC | 70 | CG12567-PC | 26..69 | 12..55 | 236 | 100 | Plus |
CG12567-PE | 75 | CG12567-PE | 26..69 | 12..55 | 236 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17480-PA | 352 | GI17480-PA | 26..350 | 12..335 | 1380 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21174-PA | 577 | GL21174-PA | 282..576 | 47..334 | 1313 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30010-PA | 356 | GA30010-PA | 27..355 | 13..334 | 1490 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11126-PA | 226 | GM11126-PA | 1..226 | 110..335 | 1200 | 98.2 | Plus |
Dsec\GM18784-PA | 210 | GM18784-PA | 1..210 | 126..335 | 1113 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15002-PA | 352 | GJ15002-PA | 26..348 | 12..333 | 1437 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23708-PA | 352 | GK23708-PA | 27..351 | 12..334 | 1434 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14900-PA | 335 | GE14900-PA | 10..335 | 10..335 | 1675 | 95.1 | Plus |