Clone RE29929 Report

Search the DGRC for RE29929

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:299
Well:29
Vector:pFlc-1
Associated Gene/TranscriptCG12567-RD
Protein status:RE29929.pep: gold
Sequenced Size:1970

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12567-RD 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

RE29929.complete Sequence

1970 bp assembled on 2011-06-21

GenBank Submission: BT128756.1

> RE29929.complete
ATAAGTATTAAATAACTTAGGAAGGTTTGCAATGGCTGTCTCGTTGATGT
GGTTGTACATACGTATTCATAAGTGTGACATTCGTCCATTTGTGGTAGAG
GGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAACATCTCGAAAA
GTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTT
TGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACGAGCGCACTGAGCAA
CTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATT
ACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTC
TACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTAC
GGCGTCGATATAAACGGTTACGTAAGACATCCGACGCTTGGACTATGCAT
TTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGG
ACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACA
GCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAA
GAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAAAGCCGACAAG
GACTTTTTCCCAATACCGAATATGTTTTCGACTTAGAGCTACCGCTTGAC
TTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAAC
AGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGATTTCAAGACAACTT
CAGCGCCTGTGGTGATTGATTTTCTTATCCGACACGGTCACATAACAGCA
GATGATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGCACGTGCCCTT
ACAGTCCATATATACGTACAAGACACGCTTTGAGCAATCCATAAAACAAC
CTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACTGTGCAATATTTCAG
AAAATATCAATGGAGAATGGGCACAAGAAGGCGAATTAATTTGAAATGCT
GTATAGTCATAAAAAAAATAATGAGGCATGGCTACAAAGAAATATTAATG
CAAGCTCAAAACAAAATAAAAGTGATTGTAATTGAAGTGAACTTTCTGAA
GCCCAGGCTAGTCTCCAAGAGGTAAACATTAATGGACGTATTGCCCTTCC
CTAGAAGTCTGATTATAAAATGAAGTTTCGTGTCAGCAAAGTTCATAAAA
AATACGATTTTGTTTTAAGCTTTTTTTTATTTCACAATATCGGTCAGCAT
TAAGAAGTAAAATTATTACAAATTATCAAATATCACTTCATTGTGTAGTC
TACTAACAGCTGTGAAGAGTTTGTAATGCACTTAGAATTTTAAAAGTAGT
GTTGAGCTGGTTTGTATTTGAATAATGAACAAAATAATGACAAATTCTAA
AATTCTGCTAAAAAATATTAGGAGGTTATTATGATGTTAAGGTAGATTAA
GCATAATGTTTTCTTGTTTAAGGATATGCGTTGGTTTGGGCTTTATTTGT
TGTTTTCGTTGGTATAAACAATCAAATTTTAACTATATTTTTAAATATTA
ATTGTTATTATATAACCTCCCTTATACTTGTCAAACATGGAGAAAAATCC
CAGAACTCGTTTTTTTTCAAAATACTAAATTTACTTAAACTGCAATATTA
TAGCAGTGTGAATTAACTATAGTGTATGTATATTAATATATTATATTACA
TCTTTTAATATATGTAGTAACCAAAGTGCTCAAAATTAAGAGATACATTA
TAGGTAGGATAATGTTACTTATGTACATTTTTGTAACCTAATACAATATT
TAATAAAGTAAATATATAAAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

RE29929.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2LHet 368865 chr2LHet 19634..20652 1876..857 5050 99.9 Minus
chr2LHet 368865 chr2LHet 20724..21388 857..193 3310 99.8 Minus
chrU 10048995 chrU 3352020..3352395 1876..1500 1690 97.6 Minus
chr2LHet 368865 chr2LHet 7917..8293 1876..1500 1680 97.4 Minus
chr2LHet 368865 chr2LHet 1702..2077 1876..1500 1675 97.4 Minus
chr2LHet 368865 chr2LHet 4916..5291 1876..1500 1675 97.4 Minus
chr2LHet 368865 chr2LHet 16268..16626 1859..1500 1605 97.5 Minus
chrU 10048995 chrU 3348952..3349187 1733..1500 1100 98.7 Minus
chr2LHet 368865 chr2LHet 179478..179715 857..620 1055 96.2 Minus
chr2LHet 368865 chr2LHet 271098..271335 620..857 1055 96.2 Plus
chr2L 23010047 chr2L 22966700..22966943 1620..1860 860 93 Plus
chr2LHet 368865 chr2LHet 176013..176179 1075..910 695 95.8 Minus
chr2LHet 368865 chr2LHet 175838..176014 1276..1103 685 93.8 Minus
chr2LHet 368865 chr2LHet 21436..21570 197..63 675 100 Minus
chrU 10048995 chrU 3348058..3348140 1825..1743 370 96.4 Minus
chr2LHet 368865 chr2LHet 32397..32462 66..1 330 100 Minus
chrU 10048995 chrU 3343916..3343960 1876..1832 210 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23161116..23162140 1882..857 5080 99.9 Minus
2L 23513712 2L 23162212..23162876 857..193 3310 99.8 Minus
2L 23513712 2L 23140222..23140603 1882..1500 1720 97.7 Minus
2L 23513712 2L 23149437..23149819 1882..1500 1710 97.4 Minus
2L 23513712 2L 23143222..23143603 1882..1500 1705 97.4 Minus
2L 23513712 2L 23146436..23146817 1882..1500 1705 97.4 Minus
2L 23513712 2L 23157794..23158152 1859..1500 1605 97.5 Minus
2L 23513712 2L 23137160..23137395 1733..1500 1100 98.7 Minus
2L 23513712 2L 23323955..23324192 857..620 1055 96.2 Minus
2L 23513712 2L 23415916..23416153 620..857 1055 96.2 Plus
2L 23513712 2L 23075465..23075708 1620..1860 860 93 Plus
2L 23513712 2L 23320471..23320637 1075..910 695 95.8 Minus
2L 23513712 2L 23320296..23320472 1276..1103 685 93.8 Minus
2L 23513712 2L 23162924..23163058 197..63 675 100 Minus
2L 23513712 2L 23136266..23136348 1825..1743 370 96.4 Minus
2L 23513712 2L 23173888..23173953 66..1 330 100 Minus
2L 23513712 2L 23132119..23132169 1882..1832 240 98 Minus
Y 3667352 Y 3159784..3159887 1862..1965 220 80.8 Plus
X 23542271 X 6653048..6653099 1862..1913 215 94.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23161116..23162140 1882..857 5090 99.9 Minus
2L 23513712 2L 23162212..23162876 857..193 3310 99.8 Minus
2L 23513712 2L 23140222..23140603 1882..1500 1740 97.6 Minus
2L 23513712 2L 23149437..23149819 1882..1500 1730 97.4 Minus
2L 23513712 2L 23146436..23146817 1882..1500 1725 97.4 Minus
2L 23513712 2L 23143222..23143603 1882..1500 1725 97.4 Minus
2L 23513712 2L 23157794..23158152 1859..1500 1625 97.5 Minus
2L 23513712 2L 23137160..23137395 1733..1500 1110 98.7 Minus
2L 23513712 2L 23415916..23416153 620..857 1055 96.2 Plus
2L 23513712 2L 23323955..23324192 857..620 1055 96.2 Minus
2L 23513712 2L 23075465..23075708 1620..1860 890 93 Plus
2L 23513712 2L 23320471..23320637 1075..910 705 95.8 Minus
2L 23513712 2L 23320296..23320472 1276..1103 695 93.7 Minus
2L 23513712 2L 23162924..23163058 197..63 675 100 Minus
2L 23513712 2L 23136266..23136348 1825..1743 370 96.3 Minus
2L 23513712 2L 23173888..23173953 66..1 330 100 Minus
2L 23513712 2L 23132119..23132169 1882..1832 240 98 Minus
Y 3410481 Y 3006254..3006357 1862..1965 220 80.7 Plus
X 23527363 X 6661146..6661197 1862..1913 215 94.2 Plus
2L 23513712 2L 23154454..23154488 1882..1848 160 97.1 Minus
2L 23513712 2L 23152651..23152693 1882..1840 155 90.6 Minus
Blast to na_te.dros performed 2019-03-15 10:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 328..364 1441..1478 124 84.2 Plus
gypsy9 5349 gypsy9 GYPSY9 5349bp 361..527 1057..1220 116 53.9 Plus
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 2456..2494 1641..1679 114 76.9 Plus

RE29929.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:44:49 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
chr2LHet 19634..20651 858..1876 99 <- Minus
chr2LHet 20724..21384 197..857 99 <- Minus
chr2LHet 21437..21570 63..196 100 <- Minus
chr2LHet 32401..32462 1..62 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-21 09:19:10 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RD 1..1008 32..1039 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:24:37 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RD 1..1008 32..1039 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:11:20 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RD 1..1008 32..1039 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 09:19:09 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RD 1..1875 1..1876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:24:37 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RD 1..1875 1..1876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:20 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RD 1..1875 1..1876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:49 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 858..1876 99 <- Minus
2L 23162212..23162872 197..857 99 <- Minus
2L 23162925..23163058 63..196 100 <- Minus
2L 23173892..23173953 1..62 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:49 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 858..1876 99 <- Minus
2L 23162212..23162872 197..857 99 <- Minus
2L 23162925..23163058 63..196 100 <- Minus
2L 23173892..23173953 1..62 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:49 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 858..1876 99 <- Minus
2L 23162212..23162872 197..857 99 <- Minus
2L 23162925..23163058 63..196 100 <- Minus
2L 23173892..23173953 1..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:24:37 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 19633..20650 858..1876 99 <- Minus
2LHet 20723..21383 197..857 99 <- Minus
2LHet 21436..21569 63..196 100 <- Minus
2LHet 32403..32464 1..62 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:48 Download gff for RE29929.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 858..1876 99 <- Minus
2L 23162212..23162872 197..857 99 <- Minus
2L 23162925..23163058 63..196 100 <- Minus
2L 23173892..23173953 1..62 100   Minus

RE29929.hyp Sequence

Translation from 31 to 1038

> RE29929.hyp
MAVSLMWLYIRIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCIRAC
EQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEV
KADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQRSNTKE
TWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVSAGCVSF
YFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDCVERVFT
SDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIYTYKTRF
EQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

RE29929.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PD 335 CG12567-PD 1..335 1..335 1770 100 Plus
CG12567-PF 341 CG12567-PF 16..341 10..335 1714 99.4 Plus
CG12567-PG 349 CG12567-PG 26..349 12..335 1713 100 Plus
CG12567-PA 349 CG12567-PA 26..349 12..335 1713 100 Plus
CG12567-PC 70 CG12567-PC 26..69 12..55 236 100 Plus

RE29929.pep Sequence

Translation from 31 to 1038

> RE29929.pep
MAVSLMWLYIRIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCIRAC
EQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEV
KADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQRSNTKE
TWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVSAGCVSF
YFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDCVERVFT
SDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIYTYKTRF
EQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

RE29929.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15848-PA 326 GF15848-PA 5..323 13..334 1467 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21418-PA 2299 GG21418-PA 2013..2299 49..335 1475 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13287-PA 337 GH13287-PA 10..330 12..331 1411 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PD 335 CG12567-PD 1..335 1..335 1770 100 Plus
CG12567-PF 341 CG12567-PF 16..341 10..335 1714 99.4 Plus
CG12567-PG 349 CG12567-PG 26..349 12..335 1713 100 Plus
CG12567-PA 349 CG12567-PA 26..349 12..335 1713 100 Plus
CG12567-PC 70 CG12567-PC 26..69 12..55 236 100 Plus
CG12567-PE 75 CG12567-PE 26..69 12..55 236 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17480-PA 352 GI17480-PA 26..350 12..335 1380 79.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21174-PA 577 GL21174-PA 282..576 47..334 1313 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30010-PA 356 GA30010-PA 27..355 13..334 1490 86.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11126-PA 226 GM11126-PA 1..226 110..335 1200 98.2 Plus
Dsec\GM18784-PA 210 GM18784-PA 1..210 126..335 1113 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15002-PA 352 GJ15002-PA 26..348 12..333 1437 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23708-PA 352 GK23708-PA 27..351 12..334 1434 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14900-PA 335 GE14900-PA 10..335 10..335 1675 95.1 Plus