BDGP Sequence Production Resources |
Search the DGRC for RE30049
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 300 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG15044-RA |
Protein status: | RE30049.pep: gold |
Preliminary Size: | 471 |
Sequenced Size: | 829 |
Gene | Date | Evidence |
---|---|---|
CG15044 | 2001-12-14 | Blastp of sequenced clone |
CG15044 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15044 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15044 | 2008-04-29 | Release 5.5 accounting |
CG15044 | 2008-08-15 | Release 5.9 accounting |
CG15044 | 2008-12-18 | 5.12 accounting |
829 bp (829 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071266
> RE30049.complete AAAATTTCAAAAAGCGTTCGAATAGTGCATCAGAAAAGGAGTCTACACAC CCCTTATTCTTCCGATTATTTTGTTTCGTTCCCATTTTTTTTCTGGTGAT CTGGTGATGTTAACAAAGATGTTCCTAGTGCTCTGCCTGGTGCTGGGCAT CATGGCATCGGTATCCGGACAGCCACACGCCCGTGCCAGCGATCTCTACT ATACGGACATAACGCCCGTGACCGACGAAACACGCTACACCACCCTCAAT CCGGACGCACAGCTGAACGAGATGAACAAGGTGAAGCACTCGAAGGGCAA CGTGGTCTTCACCGCGGGAAAGCGGGCATCGGGTGACCGACTCATTGTGA ACCACTACGATGACGACAGCTTTCCCAGTGCCAAGGATGTGGAGGTGCTC ATGAGCTATCCGGCCGGAGCCAGCACAGGGGTCACGCTGACGAGCATCGA GGTGTATGTGGACATGACGGCGGACGATGCCGGTGGCTATCTGACCAAGG GTGGCATCGGTCAGACCAACGTGGAGATTCTGCTGACCTCCAATCAGACG CGCAGCTTCGTCTACGAGACGTTCATCTATGGGTACTAGGACTGCTCGCC CAGAACTTTCAGCTACAATAAACGATTCGCTTGGAACCCAACTGTGATCA TGAACTCCAGACCCTGCCCCTGTCCCTGCCCTTCCTGCCGAGAGTATTAT TAGTCATAGACGTACATATATTAAAGAATCAAATTTCAAACGGACTACTG TGCACATCCTTTTACTTATCCGTACCATTGCAGAAATAAAGTGTTCCTTG TTGCTTGGCGCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15044-RA | 815 | CG15044-RA | 1..815 | 2..816 | 4045 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18380298..18381109 | 813..2 | 3970 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18491182..18491996 | 816..2 | 4045 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18499280..18500094 | 816..2 | 4045 | 99.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18380298..18381109 | 1..813 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..483 | 107..589 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..483 | 107..589 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..483 | 107..589 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..483 | 107..589 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..483 | 107..589 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..812 | 2..813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..812 | 2..813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 11..822 | 1..813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 1..812 | 2..813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15044-RA | 11..822 | 1..813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18491185..18491996 | 1..813 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18491185..18491996 | 1..813 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18491185..18491996 | 1..813 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18385218..18386029 | 1..813 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18499283..18500094 | 1..813 | 99 | Minus |
Translation from 106 to 588
> RE30049.pep MLTKMFLVLCLVLGIMASVSGQPHARASDLYYTDITPVTDETRYTTLNPD AQLNEMNKVKHSKGNVVFTAGKRASGDRLIVNHYDDDSFPSAKDVEVLMS YPAGASTGVTLTSIEVYVDMTADDAGGYLTKGGIGQTNVEILLTSNQTRS FVYETFIYGY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22412-PA | 162 | GF22412-PA | 1..162 | 1..160 | 593 | 67.9 | Plus |
Dana\GF22411-PA | 157 | GF22411-PA | 6..156 | 5..159 | 153 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18116-PA | 156 | GG18116-PA | 1..156 | 5..160 | 742 | 90.4 | Plus |
Dere\GG18115-PA | 163 | GG18115-PA | 30..161 | 33..159 | 154 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12339-PA | 166 | GH12339-PA | 2..166 | 7..160 | 421 | 50.3 | Plus |
Dgri\GH12337-PA | 162 | GH12337-PA | 4..160 | 7..159 | 176 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15044-PA | 160 | CG15044-PA | 1..160 | 1..160 | 821 | 100 | Plus |
CG15043-PB | 163 | CG15043-PB | 7..161 | 7..159 | 153 | 25.8 | Plus |
CG15043-PA | 163 | CG15043-PA | 7..161 | 7..159 | 153 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15588-PA | 170 | GI15588-PA | 36..170 | 26..160 | 458 | 62.2 | Plus |
Dmoj\GI15587-PA | 164 | GI15587-PA | 6..162 | 5..159 | 164 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27029-PA | 157 | GL27029-PA | 1..157 | 1..160 | 603 | 70.6 | Plus |
Dper\GL27028-PA | 166 | GL27028-PA | 36..164 | 34..159 | 160 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13456-PA | 157 | GA13456-PA | 1..157 | 1..160 | 603 | 70.6 | Plus |
Dpse\GA13455-PA | 166 | GA13455-PA | 36..164 | 34..159 | 159 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22809-PA | 156 | GM22809-PA | 1..156 | 5..160 | 794 | 95.5 | Plus |
Dsec\GM22808-PA | 163 | GM22808-PA | 30..161 | 33..159 | 140 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15632-PA | 156 | GD15632-PA | 1..156 | 5..160 | 794 | 95.5 | Plus |
Dsim\GD15631-PA | 163 | GD15631-PA | 30..161 | 33..159 | 142 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15192-PA | 140 | GJ15192-PA | 2..140 | 22..160 | 442 | 58.3 | Plus |
Dvir\GJ15191-PA | 162 | GJ15191-PA | 4..160 | 7..159 | 194 | 30.2 | Plus |
Translation from 106 to 588
> RE30049.hyp MLTKMFLVLCLVLGIMASVSGQPHARASDLYYTDITPVTDETRYTTLNPD AQLNEMNKVKHSKGNVVFTAGKRASGDRLIVNHYDDDSFPSAKDVEVLMS YPAGASTGVTLTSIEVYVDMTADDAGGYLTKGGIGQTNVEILLTSNQTRS FVYETFIYGY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15044-PA | 160 | CG15044-PA | 1..160 | 1..160 | 821 | 100 | Plus |
CG15043-PB | 163 | CG15043-PB | 7..161 | 7..159 | 153 | 25.8 | Plus |
CG15043-PA | 163 | CG15043-PA | 7..161 | 7..159 | 153 | 25.8 | Plus |