BDGP Sequence Production Resources |
Search the DGRC for RE30121
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 301 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6569-RA |
Protein status: | RE30121.pep: gold |
Preliminary Size: | 1614 |
Sequenced Size: | 1628 |
Gene | Date | Evidence |
---|---|---|
CG6569 | 2002-10-01 | Blastp of sequenced clone |
CG6569 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6569 | 2008-04-29 | Release 5.5 accounting |
CG6569 | 2008-08-15 | Release 5.9 accounting |
CG6569 | 2008-12-18 | 5.12 accounting |
1628 bp (1628 high quality bases) assembled on 2002-10-01
GenBank Submission: BT001601
> RE30121.complete AGTTTCATAAAATCGGTGAAATACAGAGAACTCCTTGCTGCACGCGGGGA TACGGATGGATTTCTAAGCCAAACTGCCTTCAACAGGATTTTAAATGCCT GATAATTTAAAGGACAAAGCTTGCTTCATCGCAGAAACTCGTCTCATGTC AAACATAAACATTTTGTTTGGTTCATTGATGAAATTCTATACAAACACAC AATAAACCCGATACACAACTCTGCTGTGAAAAATAATATGATTCCAAACA CACAACAAATATGACACAACACGAAAATCAGCAAGCCATTCTCAGCAACT TTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGATCAGGCC GAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCGGCTGGA CATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATTACCAGG AGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCGTCCAAG AAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAACCATGCA TGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTAAGAATT ATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAGCGGTAC TCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCAGAAGGA GATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACAAGCAGC ACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGATAGCGAG CAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGAGTACGA ACTATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAAGACGGG AAACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGCGAAGAG GCAAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTACAAGGA GGAGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATGAGGCCT CCACACGCGTCGACGTTGAAGTGGGCCATCTGAAGAATATGCTCAAGCAA AAGGACATTATAATTACCACCATAAAGGAGAAGCTGAAAAAACTGGCTGT CGATCATAAGTCGGTGGTGCACATGCTGGAGACCCGGAGCAATCGCCTGG AGCAAAAGTACAAGGAGGTGCTGAAGCAGAACGATAAGCTGGAGGCCGAG TTGGAGGCAACTTGCCGGCGACTTGGCGAACTGGAGCGATCCGTTACTGA AGCTTACGGTGGGGATGCCGAAGATGCCAGGATAAAAATGTACTATAAGT CTCAAATGGATCGCTGCATAATGGATCACAAGAAAATGAAGGAGAAATAC CGCGAGGGCATGGAGGACATCACGCAACGCTTCGAATCGGAAATTTACAA GTTAAGGGAGGAGAACTCCGTGCTGCTGGCGGAAAACGAACTGCTTAAGA GCGGTGCCGCAGGCGATAGCTCCAAGCAGACTTCACGCTGATTTTACGGT TGTACAAATATATATTTTATGATAACTCTCGTACATAATAAATTAGTTCT ACGAGATCACACCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6569-RA | 1614 | CG6569-RA | 1..1612 | 1..1612 | 8030 | 99.8 | Plus |
CG6569-RB | 1546 | CG6569-RB | 226..1544 | 294..1612 | 6595 | 100 | Plus |
CG6569.a | 1523 | CG6569.a | 545..1521 | 636..1612 | 4885 | 100 | Plus |
CG6569.a | 1523 | CG6569.a | 136..479 | 294..637 | 1720 | 100 | Plus |
CG6569-RB | 1546 | CG6569-RB | 1..163 | 133..295 | 815 | 100 | Plus |
CG6569.a | 1523 | CG6569.a | 1..73 | 223..295 | 365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 17690473..17690972 | 1133..634 | 2485 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 17691109..17691452 | 637..294 | 1720 | 100 | Minus |
chr3R | 27901430 | chr3R | 17689879..17690157 | 1612..1334 | 1335 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 17691515..17691814 | 295..1 | 1250 | 96 | Minus |
chr3R | 27901430 | chr3R | 17690216..17690417 | 1333..1132 | 980 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21866767..21867266 | 1133..634 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 21867403..21867746 | 637..294 | 1720 | 100 | Minus |
3R | 32079331 | 3R | 21867809..21868103 | 295..1 | 1445 | 99.3 | Minus |
3R | 32079331 | 3R | 21866172..21866450 | 1612..1334 | 1395 | 100 | Minus |
3R | 32079331 | 3R | 21866510..21866711 | 1333..1132 | 1010 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 21607598..21608097 | 1133..634 | 2500 | 100 | Minus |
3R | 31820162 | 3R | 21608234..21608577 | 637..294 | 1720 | 100 | Minus |
3R | 31820162 | 3R | 21608640..21608934 | 295..1 | 1445 | 99.3 | Minus |
3R | 31820162 | 3R | 21607003..21607281 | 1612..1334 | 1395 | 100 | Minus |
3R | 31820162 | 3R | 21607341..21607542 | 1333..1132 | 1010 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 17689878..17690157 | 1334..1613 | 98 | <- | Minus |
chr3R | 17690216..17690415 | 1134..1333 | 99 | <- | Minus |
chr3R | 17690473..17690970 | 636..1133 | 99 | <- | Minus |
chr3R | 17691111..17691450 | 296..635 | 100 | <- | Minus |
chr3R | 17691515..17691814 | 1..295 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1281 | 261..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1281 | 261..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1281 | 261..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1281 | 261..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1281 | 261..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1612 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1612 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1428 | 185..1612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1612 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6569-RA | 1..1428 | 185..1612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21866171..21866450 | 1334..1613 | 99 | <- | Minus |
3R | 21866510..21866709 | 1134..1333 | 100 | <- | Minus |
3R | 21866767..21867264 | 636..1133 | 100 | <- | Minus |
3R | 21867405..21867744 | 296..635 | 100 | <- | Minus |
3R | 21867809..21868103 | 1..295 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21866171..21866450 | 1334..1613 | 99 | <- | Minus |
3R | 21866510..21866709 | 1134..1333 | 100 | <- | Minus |
3R | 21866767..21867264 | 636..1133 | 100 | <- | Minus |
3R | 21867405..21867744 | 296..635 | 100 | <- | Minus |
3R | 21867809..21868103 | 1..295 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21866171..21866450 | 1334..1613 | 99 | <- | Minus |
3R | 21866510..21866709 | 1134..1333 | 100 | <- | Minus |
3R | 21866767..21867264 | 636..1133 | 100 | <- | Minus |
3R | 21867405..21867744 | 296..635 | 100 | <- | Minus |
3R | 21867809..21868103 | 1..295 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 17691893..17692172 | 1334..1613 | 99 | <- | Minus |
arm_3R | 17692232..17692431 | 1134..1333 | 100 | <- | Minus |
arm_3R | 17692489..17692986 | 636..1133 | 100 | <- | Minus |
arm_3R | 17693127..17693466 | 296..635 | 100 | <- | Minus |
arm_3R | 17693531..17693825 | 1..295 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21607002..21607281 | 1334..1613 | 99 | <- | Minus |
3R | 21607341..21607540 | 1134..1333 | 100 | <- | Minus |
3R | 21607598..21608095 | 636..1133 | 100 | <- | Minus |
3R | 21608236..21608575 | 296..635 | 100 | <- | Minus |
3R | 21608640..21608934 | 1..295 | 99 | Minus |
Translation from 260 to 1540
> RE30121.pep MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE ENSVLLAENELLKSGAAGDSSKQTSR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16960-PA | 441 | GF16960-PA | 1..437 | 1..421 | 1133 | 54.8 | Plus |
Dana\GF16959-PA | 212 | GF16959-PA | 46..196 | 255..410 | 155 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12554-PA | 425 | GG12554-PA | 1..425 | 1..425 | 1824 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17083-PA | 422 | GH17083-PA | 1..418 | 1..421 | 659 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6569-PA | 426 | CG6569-PA | 1..426 | 1..426 | 2118 | 100 | Plus |
CG6569-PB | 409 | CG6569-PB | 1..409 | 18..426 | 2033 | 100 | Plus |
CG6569-PC | 135 | CG6569-PC | 1..135 | 1..135 | 636 | 94.8 | Plus |
CG6569-PD | 125 | CG6569-PD | 1..125 | 1..125 | 628 | 100 | Plus |
cana-PC | 1409 | CG33694-PC | 456..830 | 74..408 | 176 | 22.2 | Plus |
cana-PB | 1409 | CG33694-PB | 456..830 | 74..408 | 176 | 22.2 | Plus |
cana-PA | 1931 | CG33694-PA | 978..1352 | 74..408 | 176 | 22.2 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 800..1169 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 803..1172 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 825..1194 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 854..1223 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PS | 1653 | CG5020-PS | 855..1224 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PM | 1668 | CG5020-PM | 870..1239 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PB | 1689 | CG5020-PB | 891..1260 | 20..412 | 171 | 23.3 | Plus |
CLIP-190-PA | 1690 | CG5020-PA | 892..1261 | 20..412 | 171 | 23.3 | Plus |
mud-PL | 2501 | CG12047-PL | 1076..1528 | 15..413 | 168 | 21.6 | Plus |
mud-PK | 1912 | CG12047-PK | 1076..1504 | 15..411 | 161 | 20.8 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 651..956 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 654..959 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 676..981 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 705..1010 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PS | 1653 | CG5020-PS | 706..1011 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PM | 1668 | CG5020-PM | 721..1026 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PB | 1689 | CG5020-PB | 742..1047 | 22..343 | 160 | 21.9 | Plus |
CLIP-190-PA | 1690 | CG5020-PA | 743..1048 | 22..343 | 160 | 21.9 | Plus |
mud-PG | 1933 | CG12047-PG | 1076..1482 | 15..411 | 159 | 21.8 | Plus |
zip-PH | 1964 | CG15792-PH | 1268..1629 | 30..413 | 159 | 21.1 | Plus |
zip-PG | 1971 | CG15792-PG | 1260..1621 | 30..413 | 159 | 21.1 | Plus |
zip-PE | 1971 | CG15792-PE | 1260..1621 | 30..413 | 159 | 21.1 | Plus |
zip-PC | 1971 | CG15792-PC | 1260..1621 | 30..413 | 159 | 21.1 | Plus |
zip-PF | 1979 | CG15792-PF | 1268..1629 | 30..413 | 159 | 21.1 | Plus |
zip-PB | 2011 | CG15792-PB | 1300..1661 | 30..413 | 159 | 21.1 | Plus |
zip-PD | 2016 | CG15792-PD | 1305..1666 | 30..413 | 159 | 21.1 | Plus |
zip-PI | 2024 | CG15792-PI | 1313..1674 | 30..413 | 159 | 21.1 | Plus |
zip-PA | 2056 | CG15792-PA | 1345..1706 | 30..413 | 159 | 21.1 | Plus |
mud-PI | 2113 | CG12047-PI | 1076..1482 | 15..411 | 159 | 21.8 | Plus |
mud-PJ | 2165 | CG12047-PJ | 1076..1482 | 15..411 | 159 | 21.8 | Plus |
mud-PF | 2394 | CG12047-PF | 1076..1482 | 15..411 | 159 | 21.8 | Plus |
mud-PH | 2567 | CG12047-PH | 1076..1482 | 15..411 | 159 | 21.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10573-PA | 434 | GI10573-PA | 16..433 | 17..420 | 762 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23733-PA | 420 | GL23733-PA | 48..412 | 38..414 | 587 | 38.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19691-PA | 442 | GA19691-PA | 48..441 | 38..425 | 591 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23687-PA | 426 | GM23687-PA | 1..425 | 1..425 | 2041 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18496-PA | 426 | GD18496-PA | 1..425 | 1..425 | 2043 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22931-PA | 373 | GJ22931-PA | 1..368 | 57..420 | 713 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13014-PA | 377 | GK13014-PA | 3..372 | 59..424 | 843 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24079-PA | 425 | GE24079-PA | 1..425 | 1..425 | 1739 | 81.6 | Plus |
Translation from 260 to 1540
> RE30121.hyp MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE ENSVLLAENELLKSGAAGDSSKQTSR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6569-PA | 426 | CG6569-PA | 1..426 | 1..426 | 2118 | 100 | Plus |
CG6569-PB | 409 | CG6569-PB | 1..409 | 18..426 | 2033 | 100 | Plus |
CG6569-PC | 135 | CG6569-PC | 1..135 | 1..135 | 636 | 94.8 | Plus |
CG6569-PD | 125 | CG6569-PD | 1..125 | 1..125 | 628 | 100 | Plus |
cana-PC | 1409 | CG33694-PC | 456..830 | 74..408 | 176 | 22.2 | Plus |