Clone RE30121 Report

Search the DGRC for RE30121

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:301
Well:21
Vector:pFlc-1
Associated Gene/TranscriptCG6569-RA
Protein status:RE30121.pep: gold
Preliminary Size:1614
Sequenced Size:1628

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6569 2002-10-01 Blastp of sequenced clone
CG6569 2003-01-01 Sim4 clustering to Release 3
CG6569 2008-04-29 Release 5.5 accounting
CG6569 2008-08-15 Release 5.9 accounting
CG6569 2008-12-18 5.12 accounting

Clone Sequence Records

RE30121.complete Sequence

1628 bp (1628 high quality bases) assembled on 2002-10-01

GenBank Submission: BT001601

> RE30121.complete
AGTTTCATAAAATCGGTGAAATACAGAGAACTCCTTGCTGCACGCGGGGA
TACGGATGGATTTCTAAGCCAAACTGCCTTCAACAGGATTTTAAATGCCT
GATAATTTAAAGGACAAAGCTTGCTTCATCGCAGAAACTCGTCTCATGTC
AAACATAAACATTTTGTTTGGTTCATTGATGAAATTCTATACAAACACAC
AATAAACCCGATACACAACTCTGCTGTGAAAAATAATATGATTCCAAACA
CACAACAAATATGACACAACACGAAAATCAGCAAGCCATTCTCAGCAACT
TTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGATCAGGCC
GAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCGGCTGGA
CATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATTACCAGG
AGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCGTCCAAG
AAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAACCATGCA
TGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTAAGAATT
ATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAGCGGTAC
TCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCAGAAGGA
GATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACAAGCAGC
ACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGATAGCGAG
CAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGAGTACGA
ACTATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAAGACGGG
AAACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGCGAAGAG
GCAAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTACAAGGA
GGAGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATGAGGCCT
CCACACGCGTCGACGTTGAAGTGGGCCATCTGAAGAATATGCTCAAGCAA
AAGGACATTATAATTACCACCATAAAGGAGAAGCTGAAAAAACTGGCTGT
CGATCATAAGTCGGTGGTGCACATGCTGGAGACCCGGAGCAATCGCCTGG
AGCAAAAGTACAAGGAGGTGCTGAAGCAGAACGATAAGCTGGAGGCCGAG
TTGGAGGCAACTTGCCGGCGACTTGGCGAACTGGAGCGATCCGTTACTGA
AGCTTACGGTGGGGATGCCGAAGATGCCAGGATAAAAATGTACTATAAGT
CTCAAATGGATCGCTGCATAATGGATCACAAGAAAATGAAGGAGAAATAC
CGCGAGGGCATGGAGGACATCACGCAACGCTTCGAATCGGAAATTTACAA
GTTAAGGGAGGAGAACTCCGTGCTGCTGGCGGAAAACGAACTGCTTAAGA
GCGGTGCCGCAGGCGATAGCTCCAAGCAGACTTCACGCTGATTTTACGGT
TGTACAAATATATATTTTATGATAACTCTCGTACATAATAAATTAGTTCT
ACGAGATCACACCAAAAAAAAAAAAAAA

RE30121.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1614 CG6569-RA 1..1612 1..1612 8030 99.8 Plus
CG6569-RB 1546 CG6569-RB 226..1544 294..1612 6595 100 Plus
CG6569.a 1523 CG6569.a 545..1521 636..1612 4885 100 Plus
CG6569.a 1523 CG6569.a 136..479 294..637 1720 100 Plus
CG6569-RB 1546 CG6569-RB 1..163 133..295 815 100 Plus
CG6569.a 1523 CG6569.a 1..73 223..295 365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17690473..17690972 1133..634 2485 99.8 Minus
chr3R 27901430 chr3R 17691109..17691452 637..294 1720 100 Minus
chr3R 27901430 chr3R 17689879..17690157 1612..1334 1335 98.6 Minus
chr3R 27901430 chr3R 17691515..17691814 295..1 1250 96 Minus
chr3R 27901430 chr3R 17690216..17690417 1333..1132 980 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21866767..21867266 1133..634 2500 100 Minus
3R 32079331 3R 21867403..21867746 637..294 1720 100 Minus
3R 32079331 3R 21867809..21868103 295..1 1445 99.3 Minus
3R 32079331 3R 21866172..21866450 1612..1334 1395 100 Minus
3R 32079331 3R 21866510..21866711 1333..1132 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21607598..21608097 1133..634 2500 100 Minus
3R 31820162 3R 21608234..21608577 637..294 1720 100 Minus
3R 31820162 3R 21608640..21608934 295..1 1445 99.3 Minus
3R 31820162 3R 21607003..21607281 1612..1334 1395 100 Minus
3R 31820162 3R 21607341..21607542 1333..1132 1010 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:56:12 has no hits.

RE30121.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:15 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17689878..17690157 1334..1613 98 <- Minus
chr3R 17690216..17690415 1134..1333 99 <- Minus
chr3R 17690473..17690970 636..1133 99 <- Minus
chr3R 17691111..17691450 296..635 100 <- Minus
chr3R 17691515..17691814 1..295 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:08:21 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1281 261..1541 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:59 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1281 261..1541 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:32 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1281 261..1541 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:05 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1281 261..1541 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:54:20 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1281 261..1541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:35:28 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1612 1..1613 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:59 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1612 1..1613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:32 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1428 185..1612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:05 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1612 1..1613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:54:20 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 1..1428 185..1612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:15 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21866171..21866450 1334..1613 99 <- Minus
3R 21866510..21866709 1134..1333 100 <- Minus
3R 21866767..21867264 636..1133 100 <- Minus
3R 21867405..21867744 296..635 100 <- Minus
3R 21867809..21868103 1..295 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:15 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21866171..21866450 1334..1613 99 <- Minus
3R 21866510..21866709 1134..1333 100 <- Minus
3R 21866767..21867264 636..1133 100 <- Minus
3R 21867405..21867744 296..635 100 <- Minus
3R 21867809..21868103 1..295 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:15 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21866171..21866450 1334..1613 99 <- Minus
3R 21866510..21866709 1134..1333 100 <- Minus
3R 21866767..21867264 636..1133 100 <- Minus
3R 21867405..21867744 296..635 100 <- Minus
3R 21867809..21868103 1..295 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:32 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17691893..17692172 1334..1613 99 <- Minus
arm_3R 17692232..17692431 1134..1333 100 <- Minus
arm_3R 17692489..17692986 636..1133 100 <- Minus
arm_3R 17693127..17693466 296..635 100 <- Minus
arm_3R 17693531..17693825 1..295 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:44 Download gff for RE30121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21607002..21607281 1334..1613 99 <- Minus
3R 21607341..21607540 1134..1333 100 <- Minus
3R 21607598..21608095 636..1133 100 <- Minus
3R 21608236..21608575 296..635 100 <- Minus
3R 21608640..21608934 1..295 99   Minus

RE30121.pep Sequence

Translation from 260 to 1540

> RE30121.pep
MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL
AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS
KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT
QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL
SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT
HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK
SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG
GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE
ENSVLLAENELLKSGAAGDSSKQTSR*

RE30121.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16960-PA 441 GF16960-PA 1..437 1..421 1133 54.8 Plus
Dana\GF16959-PA 212 GF16959-PA 46..196 255..410 155 31.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12554-PA 425 GG12554-PA 1..425 1..425 1824 83.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17083-PA 422 GH17083-PA 1..418 1..421 659 38.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 426 CG6569-PA 1..426 1..426 2118 100 Plus
CG6569-PB 409 CG6569-PB 1..409 18..426 2033 100 Plus
CG6569-PC 135 CG6569-PC 1..135 1..135 636 94.8 Plus
CG6569-PD 125 CG6569-PD 1..125 1..125 628 100 Plus
cana-PC 1409 CG33694-PC 456..830 74..408 176 22.2 Plus
cana-PB 1409 CG33694-PB 456..830 74..408 176 22.2 Plus
cana-PA 1931 CG33694-PA 978..1352 74..408 176 22.2 Plus
CLIP-190-PN 1598 CG5020-PN 800..1169 20..412 171 23.3 Plus
CLIP-190-PR 1601 CG5020-PR 803..1172 20..412 171 23.3 Plus
CLIP-190-PP 1623 CG5020-PP 825..1194 20..412 171 23.3 Plus
CLIP-190-PC 1652 CG5020-PC 854..1223 20..412 171 23.3 Plus
CLIP-190-PS 1653 CG5020-PS 855..1224 20..412 171 23.3 Plus
CLIP-190-PM 1668 CG5020-PM 870..1239 20..412 171 23.3 Plus
CLIP-190-PB 1689 CG5020-PB 891..1260 20..412 171 23.3 Plus
CLIP-190-PA 1690 CG5020-PA 892..1261 20..412 171 23.3 Plus
mud-PL 2501 CG12047-PL 1076..1528 15..413 168 21.6 Plus
mud-PK 1912 CG12047-PK 1076..1504 15..411 161 20.8 Plus
CLIP-190-PN 1598 CG5020-PN 651..956 22..343 160 21.9 Plus
CLIP-190-PR 1601 CG5020-PR 654..959 22..343 160 21.9 Plus
CLIP-190-PP 1623 CG5020-PP 676..981 22..343 160 21.9 Plus
CLIP-190-PC 1652 CG5020-PC 705..1010 22..343 160 21.9 Plus
CLIP-190-PS 1653 CG5020-PS 706..1011 22..343 160 21.9 Plus
CLIP-190-PM 1668 CG5020-PM 721..1026 22..343 160 21.9 Plus
CLIP-190-PB 1689 CG5020-PB 742..1047 22..343 160 21.9 Plus
CLIP-190-PA 1690 CG5020-PA 743..1048 22..343 160 21.9 Plus
mud-PG 1933 CG12047-PG 1076..1482 15..411 159 21.8 Plus
zip-PH 1964 CG15792-PH 1268..1629 30..413 159 21.1 Plus
zip-PG 1971 CG15792-PG 1260..1621 30..413 159 21.1 Plus
zip-PE 1971 CG15792-PE 1260..1621 30..413 159 21.1 Plus
zip-PC 1971 CG15792-PC 1260..1621 30..413 159 21.1 Plus
zip-PF 1979 CG15792-PF 1268..1629 30..413 159 21.1 Plus
zip-PB 2011 CG15792-PB 1300..1661 30..413 159 21.1 Plus
zip-PD 2016 CG15792-PD 1305..1666 30..413 159 21.1 Plus
zip-PI 2024 CG15792-PI 1313..1674 30..413 159 21.1 Plus
zip-PA 2056 CG15792-PA 1345..1706 30..413 159 21.1 Plus
mud-PI 2113 CG12047-PI 1076..1482 15..411 159 21.8 Plus
mud-PJ 2165 CG12047-PJ 1076..1482 15..411 159 21.8 Plus
mud-PF 2394 CG12047-PF 1076..1482 15..411 159 21.8 Plus
mud-PH 2567 CG12047-PH 1076..1482 15..411 159 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10573-PA 434 GI10573-PA 16..433 17..420 762 41.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23733-PA 420 GL23733-PA 48..412 38..414 587 38.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19691-PA 442 GA19691-PA 48..441 38..425 591 37.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23687-PA 426 GM23687-PA 1..425 1..425 2041 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18496-PA 426 GD18496-PA 1..425 1..425 2043 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22931-PA 373 GJ22931-PA 1..368 57..420 713 45.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13014-PA 377 GK13014-PA 3..372 59..424 843 48.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24079-PA 425 GE24079-PA 1..425 1..425 1739 81.6 Plus

RE30121.hyp Sequence

Translation from 260 to 1540

> RE30121.hyp
MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL
AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS
KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT
QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL
SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT
HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK
SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG
GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE
ENSVLLAENELLKSGAAGDSSKQTSR*

RE30121.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 426 CG6569-PA 1..426 1..426 2118 100 Plus
CG6569-PB 409 CG6569-PB 1..409 18..426 2033 100 Plus
CG6569-PC 135 CG6569-PC 1..135 1..135 636 94.8 Plus
CG6569-PD 125 CG6569-PD 1..125 1..125 628 100 Plus
cana-PC 1409 CG33694-PC 456..830 74..408 176 22.2 Plus