Clone RE30129 Report

Search the DGRC for RE30129

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:301
Well:29
Vector:pFlc-1
Associated Gene/TranscriptCG8519-RA
Protein status:RE30129.pep: gold
Sequenced Size:1313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8519 2008-04-29 Release 5.5 accounting
CG8519 2008-08-15 Release 5.9 accounting
CG8519 2008-12-18 5.12 accounting

Clone Sequence Records

RE30129.complete Sequence

1313 bp assembled on 2007-01-10

GenBank Submission: BT029985

> RE30129.complete
AGAAATCAGTTGGCCGCGCAAATCGCACGGATGCGGGCGGGCTGAAATCC
AAGAGATACAATCCCAACCAAAAAAAAAAACAAAAAAAAAAGAAAATAAG
CAGAGATCAGTCAGAGAGAAAAAGAAAAGGTGAAAAAGACATACTCCAAA
TCAGATCGAATCGTGGCGGACTGAGATATACGCAAAATTGATGGTTTAAA
TAAATAAATAAATGAGTTTTCGGTGCGCGTCGAAAGTGCAGTGCGCGATT
TTTGTATCAGTATCCACAATAATAATGACCAATAGCATAAGACAAAATCC
GAAAAAATCTTTCGAATATAACCTGCAGCAAGCGGCAGCAGAAAACTCAT
TAATTTTCCAAATTTCACCCAAAACAAAAAATAAAACAAATGAACGTATC
TCACGGATGCGAAATTCGGTGTGTGGCTGTAATTTTAAACGCATTTTTTG
CGCTTGTTTTGACATTGAAATGAAACAACAATAACAATCGGATAATTGAA
ACGGAGAAAACCCACGCCAACGGATATACACCTGCCGTGAAAACAAAAAT
TTAAGTTACAAAAAAAAATCGATCTAACTAAATCAAGGAGCTTGGAGAAC
TCAGGGATTGCGATAAGATGACCACGCGTGGAATTCGGTGCAAGAAGTCC
ACATTGACGGAGTTGAAAATCGCCGTGATCGGAGCGCCCAGTGTTGGCAA
AAGCGCCCTAATTGTGCGTTTCTTGACAAAGCGTTACATCGGGGAGTACG
ATCATCAGACTGAGAATCGCTACAAGCACGAGGCTATGGTGGATGGCGAA
CCGGTGCTCTTTGAAATACTAGACACATGTCCCAAGGCTGAAGACGAATA
CCCCAATGCAGCTGAGCTCGTTCAGTGGGCCGATGGCCTATTGCTGGTCT
ACTCGATAACAGATCGCAAGAGTTTCAACTATATACGCCGTGCCAAATCC
GATCTTCAGTCCGATACACCCGTCCAACTTTGTGCCAACAAAGTGGATAT
GGTGCACCTGCGCCAGGTGAGCCGCGACGAGGGCGAAATCCTGGCCAAGG
ACTTTGAGTGCAAGTTCAGCGAGGTCTCCGCCGCCGACCACGTCGACCAG
GTGGCCGAGGTTTTCAACGAGCTGTGCAAAGAGGTGCTGGCCTCCAAGCG
CAAGTCCAAGCAGAGTCTGCTGGAAAGGATGCTCGGTGGAGCACGACCCT
ACAGCCGAGGGAAGAGCGACAGCAATTTGCCAAAAGACTGATAGCGGTGA
TGGGATTTTTATGTAAATAAATGTACATTTTTCTATAAATCAAACGGAAA
AAAAAAAAAAAAA

RE30129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8519-RA 1374 CG8519-RA 20..1318 1..1299 6420 99.8 Plus
CG8519.c 663 CG8519.c 70..663 706..1299 2970 100 Plus
CG8519.b 666 CG8519.b 71..664 706..1299 2970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6697230..6697933 1..705 3280 98.3 Plus
chr3L 24539361 chr3L 6700901..6701363 835..1297 2255 99.1 Plus
chr3L 24539361 chr3L 6700711..6700843 705..837 665 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6704866..6705570 1..705 3430 99.7 Plus
3L 28110227 3L 6708538..6709002 835..1299 2325 100 Plus
3L 28110227 3L 6708348..6708480 705..837 665 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6697966..6698670 1..705 3450 99.7 Plus
3L 28103327 3L 6701638..6702102 835..1299 2325 100 Plus
3L 28103327 3L 6701448..6701580 705..837 665 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:07:02 has no hits.

RE30129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:08:00 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6697230..6697933 1..705 94 -> Plus
chr3L 6700712..6700842 706..836 100 -> Plus
chr3L 6700903..6701363 837..1297 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:08:22 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..624 618..1241 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:13:57 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..624 618..1241 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:48 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..624 618..1241 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:24:06 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..624 618..1241 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:57 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..624 618..1241 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:42:26 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..627 618..1244 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:13:57 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..1297 1..1297 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:48 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 7..1303 1..1297 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:24:06 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 1..627 618..1244 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:57 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 7..1303 1..1297 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:00 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6704866..6705570 1..705 99 -> Plus
3L 6708349..6708479 706..836 100 -> Plus
3L 6708540..6709000 837..1297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:00 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6704866..6705570 1..705 99 -> Plus
3L 6708349..6708479 706..836 100 -> Plus
3L 6708540..6709000 837..1297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:00 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6704866..6705570 1..705 99 -> Plus
3L 6708349..6708479 706..836 100 -> Plus
3L 6708540..6709000 837..1297 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:48 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6697966..6698670 1..705 99 -> Plus
arm_3L 6701449..6701579 706..836 100 -> Plus
arm_3L 6701640..6702100 837..1297 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:44:58 Download gff for RE30129.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6697966..6698670 1..705 99 -> Plus
3L 6701449..6701579 706..836 100 -> Plus
3L 6701640..6702100 837..1297 100   Plus

RE30129.pep Sequence

Translation from 617 to 1240

> RE30129.pep
MTTRGIRCKKSTLTELKIAVIGAPSVGKSALIVRFLTKRYIGEYDHQTEN
RYKHEAMVDGEPVLFEILDTCPKAEDEYPNAAELVQWADGLLLVYSITDR
KSFNYIRRAKSDLQSDTPVQLCANKVDMVHLRQVSRDEGEILAKDFECKF
SEVSAADHVDQVAEVFNELCKEVLASKRKSKQSLLERMLGGARPYSRGKS
DSNLPKD*

RE30129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23546-PA 206 GF23546-PA 1..206 1..207 1066 97.1 Plus
Dana\GF14027-PA 329 GF14027-PA 23..194 16..169 269 36.6 Plus
Dana\GF13570-PA 257 GF13570-PA 47..222 10..185 243 34.7 Plus
Dana\GF24954-PA 184 GF24954-PA 1..164 13..173 232 33.5 Plus
Dana\GF11365-PA 182 GF11365-PA 1..164 13..173 207 35.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14386-PA 207 GG14386-PA 1..207 1..207 1092 99 Plus
Dere\GG23535-PA 328 GG23535-PA 23..194 16..169 267 37.2 Plus
Dere\GG22302-PA 264 GG22302-PA 54..229 10..185 243 34.2 Plus
Dere\GG14553-PA 184 GG14553-PA 1..164 13..173 231 33.5 Plus
Dere\GG22932-PA 182 GG22932-PA 1..164 13..173 207 35.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15851-PA 207 GH15851-PA 1..207 1..207 1063 95.7 Plus
Dgri\GH13149-PA 329 GH13149-PA 23..194 16..169 258 36.6 Plus
Dgri\GH19819-PA 265 GH19819-PA 57..229 10..182 241 34.8 Plus
Dgri\GH15039-PA 184 GH15039-PA 1..164 13..173 232 33.5 Plus
Dgri\GH20176-PA 182 GH20176-PA 1..173 13..182 216 34.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8519-PA 207 CG8519-PA 1..207 1..207 1061 100 Plus
CG8519-PB 151 CG8519-PB 1..151 57..207 775 100 Plus
CG5160-PB 328 CG5160-PB 23..194 16..169 264 36.6 Plus
CG5160-PA 328 CG5160-PA 23..194 16..169 264 36.6 Plus
Rap2l-PA 182 CG3204-PA 1..175 13..183 237 34.4 Plus
Rap1-PC 184 CG1956-PC 1..180 13..189 233 32.2 Plus
Rap1-PB 184 CG1956-PB 1..180 13..189 233 32.2 Plus
Rap1-PA 184 CG1956-PA 1..180 13..189 233 32.2 Plus
Ric-PB 264 CG8418-PB 61..220 17..173 231 34.7 Plus
Ric-PA 264 CG8418-PA 61..220 17..173 231 34.7 Plus
Ras85D-PA 189 CG9375-PA 1..167 13..177 206 29.8 Plus
Rheb-PB 182 CG1081-PB 5..162 15..169 196 33.1 Plus
Rheb-PA 182 CG1081-PA 5..162 15..169 196 33.1 Plus
Ras64B-PA 192 CG1167-PA 7..166 17..173 192 28.8 Plus
Rala-PB 197 CG2849-PB 13..181 17..183 192 30.5 Plus
Rala-PC 201 CG2849-PC 13..182 17..183 189 29.9 Plus
Rala-PA 201 CG2849-PA 13..182 17..183 189 29.9 Plus
Rab8-PC 207 CG8287-PC 10..179 17..183 166 29.1 Plus
Rab8-PA 207 CG8287-PA 10..179 17..183 166 29.1 Plus
Rab2-PB 213 CG3269-PB 8..167 17..173 162 30.9 Plus
Rab2-PA 213 CG3269-PA 8..167 17..173 162 30.9 Plus
Rgk2-PA 740 CG34390-PA 528..704 17..188 153 25.3 Plus
RabX4-PA 213 CG31118-PA 10..176 17..179 152 24.9 Plus
Rab8-PB 172 CG8287-PB 17..144 58..183 146 31.5 Plus
Rab35-PB 201 CG9575-PB 10..193 17..198 144 25.3 Plus
Rab35-PD 201 CG9575-PD 10..193 17..198 144 25.3 Plus
Rab35-PA 201 CG9575-PA 10..193 17..198 144 25.3 Plus
Rab18-PA 197 CG3129-PA 6..169 16..177 143 32.5 Plus
CG8500-PB 233 CG8500-PB 18..178 15..169 143 28.7 Plus
CG8500-PA 233 CG8500-PA 18..178 15..169 143 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12632-PA 207 GI12632-PA 1..207 1..207 1075 97.6 Plus
Dmoj\GI17789-PA 329 GI17789-PA 23..194 16..169 269 37.2 Plus
Dmoj\GI20407-PA 267 GI20407-PA 64..247 17..200 245 33.8 Plus
Dmoj\GI16691-PA 184 GI16691-PA 1..164 13..173 238 34.1 Plus
Dmoj\GI20698-PA 182 GI20698-PA 1..173 13..182 211 34.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13274-PA 207 GL13274-PA 1..207 1..207 1086 98.6 Plus
Dper\GL25936-PA 330 GL25936-PA 23..194 16..169 269 37.2 Plus
Dper\GL19979-PA 262 GL19979-PA 54..226 10..182 240 34.2 Plus
Dper\GL11660-PA 182 GL11660-PA 1..164 13..173 207 35.5 Plus
Dper\GL21674-PA 182 GL21674-PA 5..163 15..170 202 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21132-PA 207 GA21132-PA 1..207 1..207 1086 98.6 Plus
Dpse\GA18698-PA 330 GA18698-PA 23..194 16..169 269 37.2 Plus
Dpse\GA21063-PA 262 GA21063-PA 54..226 10..182 240 34.2 Plus
Dpse\GA15150-PA 184 GA15150-PA 1..164 13..173 233 33.5 Plus
Dpse\GA24803-PA 182 GA24803-PA 1..164 13..173 207 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14794-PA 196 GM14794-PA 8..196 24..207 950 95.8 Plus
Dsec\GM13567-PA 328 GM13567-PA 23..194 16..169 270 37.8 Plus
Dsec\GM20091-PA 264 GM20091-PA 54..220 10..173 240 34.3 Plus
Dsec\GM14161-PA 184 GM14161-PA 1..164 13..173 231 33.5 Plus
Dsec\GM18299-PA 182 GM18299-PA 1..164 13..173 207 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13966-PA 196 GD13966-PA 8..196 24..207 942 94.7 Plus
Dsim\GD22497-PA 328 GD22497-PA 23..194 16..169 268 37.2 Plus
Dsim\GD25569-PA 264 GD25569-PA 54..220 10..173 240 34.3 Plus
Dsim\R-PA 184 GD13432-PA 1..164 13..173 231 33.5 Plus
Dsim\GD11831-PA 182 GD11831-PA 1..164 13..173 207 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12755-PA 207 GJ12755-PA 1..207 1..207 1073 97.1 Plus
Dvir\GJ17614-PA 330 GJ17614-PA 23..194 16..169 278 39.5 Plus
Dvir\GJ20079-PA 267 GJ20079-PA 57..232 10..185 241 34.2 Plus
Dvir\GJ12943-PA 184 GJ12943-PA 1..164 13..173 238 34.1 Plus
Dvir\GJ20446-PA 182 GJ20446-PA 1..173 13..182 214 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12552-PA 204 GK12552-PA 3..204 6..207 957 90.1 Plus
Dwil\GK24726-PA 329 GK24726-PA 23..194 16..169 263 37.8 Plus
Dwil\GK20561-PA 184 GK20561-PA 1..164 13..173 233 33.5 Plus
Dwil\GK21923-PA 159 GK21923-PA 1..152 13..160 198 35.9 Plus
Dwil\GK22414-PA 182 GK22414-PA 5..163 15..170 195 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21573-PA 207 GE21573-PA 1..207 1..207 1092 99 Plus
Dyak\GE18361-PA 328 GE18361-PA 23..194 16..169 265 36.6 Plus
Dyak\GE14098-PA 264 GE14098-PA 54..229 10..185 243 34.2 Plus
Dyak\GE20907-PA 184 GE20907-PA 1..164 13..173 231 33.5 Plus
Dyak\GE14369-PA 182 GE14369-PA 1..164 13..173 207 35.5 Plus

RE30129.hyp Sequence

Translation from 617 to 1240

> RE30129.hyp
MTTRGIRCKKSTLTELKIAVIGAPSVGKSALIVRFLTKRYIGEYDHQTEN
RYKHEAMVDGEPVLFEILDTCPKAEDEYPNAAELVQWADGLLLVYSITDR
KSFNYIRRAKSDLQSDTPVQLCANKVDMVHLRQVSRDEGEILAKDFECKF
SEVSAADHVDQVAEVFNELCKEVLASKRKSKQSLLERMLGGARPYSRGKS
DSNLPKD*

RE30129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8519-PA 207 CG8519-PA 1..207 1..207 1061 100 Plus
CG8519-PB 151 CG8519-PB 1..151 57..207 775 100 Plus
CG5160-PB 328 CG5160-PB 23..194 16..169 264 36.6 Plus
CG5160-PA 328 CG5160-PA 23..194 16..169 264 36.6 Plus
Rap2l-PA 182 CG3204-PA 1..175 13..183 237 34.4 Plus