BDGP Sequence Production Resources |
Search the DGRC for RE30174
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 301 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG16985-RA |
Protein status: | RE30174.pep: gold |
Preliminary Size: | 450 |
Sequenced Size: | 652 |
Gene | Date | Evidence |
---|---|---|
CG16985 | 2001-12-14 | Blastp of sequenced clone |
CG16985 | 2002-01-01 | Sim4 clustering to Release 2 |
CG16985 | 2003-01-01 | Sim4 clustering to Release 3 |
CG16985 | 2008-04-29 | Release 5.5 accounting |
CG16985 | 2008-08-15 | Release 5.9 accounting |
CG16985 | 2008-12-18 | 5.12 accounting |
652 bp (652 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071268
> RE30174.complete CTCAGTAACTTTCGTCATTTCGTCGTGCTCAGTTCAGGAATCCAAATCCA CCGGAATGGCGGCCAAGAAACTGGGAATGGACTTTGTGAAGCAGATGTCC GAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTGAAAATGATTAA AATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTTCACTGTGGCCA ATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTCTTACGGCAACA ATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAAGGATCCCATCC CGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGCAGCGAAACCTG GCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCGGTAAGAAAATG GCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGAAAGATCATCGC CAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGAAAAACTGGATT TTTAAAACAATTTTTGTAGATCGTCAGAAAACGAAATAAAATCTTTCGAA CCTCTGCTTAAGACGTACTAGTTTAATTATTTATTATTTCTTAAGTTAGT TATTTCTTAATTTACAAAATAAAGATATTTAAAACTAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 2599404..2599752 | 288..636 | 1745 | 100 | Plus |
chr3L | 24539361 | chr3L | 2599197..2599343 | 145..291 | 735 | 100 | Plus |
chr3L | 24539361 | chr3L | 2598812..2598891 | 1..80 | 400 | 100 | Plus |
chr3L | 24539361 | chr3L | 2598945..2599011 | 79..145 | 335 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 2599894..2600246 | 288..640 | 1765 | 100 | Plus |
3L | 28110227 | 3L | 2599687..2599833 | 145..291 | 735 | 100 | Plus |
3L | 28110227 | 3L | 2599302..2599381 | 1..80 | 400 | 100 | Plus |
3L | 28110227 | 3L | 2599435..2599501 | 79..145 | 335 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 2599894..2600246 | 288..640 | 1765 | 100 | Plus |
3L | 28103327 | 3L | 2599687..2599833 | 145..291 | 735 | 100 | Plus |
3L | 28103327 | 3L | 2599302..2599381 | 1..80 | 400 | 100 | Plus |
3L | 28103327 | 3L | 2599435..2599501 | 79..145 | 335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 2598812..2598890 | 1..79 | 100 | -> | Plus |
chr3L | 2598946..2599011 | 80..145 | 100 | -> | Plus |
chr3L | 2599198..2599342 | 146..290 | 100 | -> | Plus |
chr3L | 2599407..2599687 | 291..571 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..450 | 56..505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..450 | 56..505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..450 | 56..505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..450 | 56..505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..450 | 56..505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..636 | 1..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..636 | 1..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 6..641 | 1..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 1..636 | 1..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16985-RA | 6..641 | 1..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2599302..2599380 | 1..79 | 100 | -> | Plus |
3L | 2599436..2599501 | 80..145 | 100 | -> | Plus |
3L | 2599688..2599832 | 146..290 | 100 | -> | Plus |
3L | 2599897..2600242 | 291..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2599302..2599380 | 1..79 | 100 | -> | Plus |
3L | 2599436..2599501 | 80..145 | 100 | -> | Plus |
3L | 2599688..2599832 | 146..290 | 100 | -> | Plus |
3L | 2599897..2600242 | 291..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2599302..2599380 | 1..79 | 100 | -> | Plus |
3L | 2599436..2599501 | 80..145 | 100 | -> | Plus |
3L | 2599688..2599832 | 146..290 | 100 | -> | Plus |
3L | 2599897..2600242 | 291..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 2599302..2599380 | 1..79 | 100 | -> | Plus |
arm_3L | 2599436..2599501 | 80..145 | 100 | -> | Plus |
arm_3L | 2599688..2599832 | 146..290 | 100 | -> | Plus |
arm_3L | 2599897..2600242 | 291..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2599897..2600242 | 291..636 | 100 | Plus | |
3L | 2599302..2599380 | 1..79 | 100 | -> | Plus |
3L | 2599436..2599501 | 80..145 | 100 | -> | Plus |
3L | 2599688..2599832 | 146..290 | 100 | -> | Plus |
Translation from 0 to 504
> RE30174.hyp SVTFVISSCSVQESKSTGMAAKKLGMDFVKQMSEYASGSNGFDRVLKMIK ITGGGDGRAIGEFTVANEHLNRQGTLHGGLTATIVDNCTTYALMSKGSHP GVTANLNVSYIAAAKPGELIEIDCNTVRAGKKMAYLDCILRRKSDGKIIA KGGQVKYIQFDKEKLDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16985-PA | 149 | CG16985-PA | 1..149 | 19..167 | 768 | 100 | Plus |
CG16986-PB | 143 | CG16986-PB | 1..143 | 19..161 | 330 | 44.1 | Plus |
CG16986-PA | 143 | CG16986-PA | 1..143 | 19..161 | 330 | 44.1 | Plus |
Translation from 55 to 504
> RE30174.pep MAAKKLGMDFVKQMSEYASGSNGFDRVLKMIKITGGGDGRAIGEFTVANE HLNRQGTLHGGLTATIVDNCTTYALMSKGSHPGVTANLNVSYIAAAKPGE LIEIDCNTVRAGKKMAYLDCILRRKSDGKIIAKGGQVKYIQFDKEKLDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24237-PA | 153 | GF24237-PA | 1..149 | 1..149 | 587 | 71.1 | Plus |
Dana\GF24238-PA | 143 | GF24238-PA | 1..143 | 1..143 | 334 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14875-PA | 149 | GG14875-PA | 1..149 | 1..149 | 770 | 97.3 | Plus |
Dere\GG14876-PA | 143 | GG14876-PA | 1..143 | 1..143 | 332 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16393-PA | 146 | GH16393-PA | 1..144 | 1..145 | 501 | 62.1 | Plus |
Dgri\GH16394-PA | 143 | GH16394-PA | 1..142 | 1..142 | 406 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16985-PA | 149 | CG16985-PA | 1..149 | 1..149 | 768 | 100 | Plus |
CG16986-PB | 143 | CG16986-PB | 1..143 | 1..143 | 330 | 44.1 | Plus |
CG16986-PA | 143 | CG16986-PA | 1..143 | 1..143 | 330 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12476-PA | 139 | GI12476-PA | 1..136 | 10..145 | 524 | 66.9 | Plus |
Dmoj\GI12477-PA | 143 | GI12477-PA | 1..142 | 1..142 | 395 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22458-PA | 145 | GL22458-PA | 4..144 | 5..145 | 616 | 78.7 | Plus |
Dper\GL22459-PA | 133 | GL22459-PA | 15..133 | 31..149 | 473 | 73.9 | Plus |
Dper\GL22460-PA | 90 | GL22460-PA | 1..78 | 1..78 | 187 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14257-PA | 145 | GA14257-PA | 4..144 | 5..145 | 619 | 79.4 | Plus |
Dpse\GA24343-PA | 148 | GA24343-PA | 1..148 | 1..149 | 546 | 68.5 | Plus |
Dpse\GA14258-PA | 144 | GA14258-PA | 1..142 | 1..142 | 342 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15031-PA | 149 | GM15031-PA | 1..149 | 1..149 | 775 | 98 | Plus |
Dsec\GM14498-PA | 149 | GM14498-PA | 1..149 | 1..149 | 775 | 98 | Plus |
Dsec\GM14499-PA | 96 | GM14499-PA | 1..96 | 54..149 | 506 | 99 | Plus |
Dsec\GM15032-PA | 143 | GM15032-PA | 1..143 | 1..143 | 333 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13695-PA | 149 | GD13695-PA | 1..149 | 1..149 | 779 | 98.7 | Plus |
Dsim\GD13696-PA | 143 | GD13696-PA | 1..143 | 1..143 | 333 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12377-PA | 135 | GJ12377-PA | 1..134 | 10..143 | 503 | 66.4 | Plus |
Dvir\GJ12379-PA | 144 | GJ12379-PA | 1..144 | 1..144 | 407 | 52.1 | Plus |