Clone RE30177 Report

Search the DGRC for RE30177

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:301
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG16863-RA
Protein status:RE30177.pep: gold
Preliminary Size:1995
Sequenced Size:2249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16863 2001-12-14 Blastp of sequenced clone
CG16863 2002-01-01 Sim4 clustering to Release 2
CG16863 2003-01-01 Sim4 clustering to Release 3
CG16863 2008-04-29 Release 5.5 accounting
CG16863 2008-08-15 Release 5.9 accounting
CG16863 2008-12-18 5.12 accounting

Clone Sequence Records

RE30177.complete Sequence

2249 bp (2249 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071269

> RE30177.complete
ACTAATGTAGCGTTATTTACAAAATATTCATTTTTTTCGTCGTTAATTTA
TCGTTTATGCCGAATATGTCGCGTAGCAGAATATGGAAGTTCTACGACAA
GTTGGATCGGAATTCCGCGCAGTGCCAGCTCTGCGAGAAAGTAATCAAGA
CAAGCGGCAACACGTCCAATCTGATGAAGCACATGAAGACCCATCCGCAG
ATGTAGGAAAGGCTCCTGAGTTCAAAAACCTTTCACAATGAAAATTTTCT
TGAAGAAACCTCTTCGACGACGATGTGGTGGTGGAGCGGGGCATATACAA
GCGGCGGGAGCAGGATGACAAGCTGCGATTCCGGGAGGTTGTTCCCTTCA
AGGAAGAGAGCTCTGATTTCCACAGCGAGCTGTTGTTCAAGGCTGCCAAG
GATGCGAGCGGCATTATCGAGCTGGATGATCAAGGAATGATCAAGGCGGC
TGCTGAGGATCGCATCTCAACAAAGAGCGTCGGGTATGCGTGGGTCTCTC
CGGAGGCCACAGTGTCCCGAACGGAGACGGTTGGCGGCGACGATATCATC
GAATTCGAACCCAAGGAGGAGCTCGATGAGTCGGAGAAAAGCCCACTTCC
CCAAATTCATGCTGTACCATTTGCCGGCCATGACAACTTAAAAATGGAAG
AACCTCTGCCGAGCGAGAGTCCGTTTCACAAGGACATTGCCTTCTTTGTC
TGCCGTGACCGCCAGTCATTGCAGATTGTGCAGGGCGAGGGATTCCAGCA
CCTAGTGAAAGTACTGTGCCCCACCTACAGACCACCGAGTGCGGCGAAAC
TGGAGGCCATTATCTGCAGGGAGTCGGAAGCGCAGAGGTCCAAGCTCTGC
CAGCAGTTGGCCGACATCTCGACACTCAGCCTAAGTTGCTCGGTGCACAC
GAATGCGGAGAGTCGAAGCTGGATGGAGCTGGTGGCCCACTTTCACGAGG
GGCGGCAACGAATCTCCCGAACTCTTTCTGTGCTGCGCCTTCCCGATCTT
TTCACCTCCAACGATCTGGTGGATCGCATGGACCAAGTGTGTCAGCGCTT
CGACATTCCAAAGTCAAGGATCTGCTGCGTGTCGACAAGGAGCAGTCAAC
TACTGGAGGATGCGGTGACATCGTTCATGGGCGCTCATCATCATGTTCCC
TGCTTCGCAGACCAATTGAATTCTATTTTAGAGGAGGTGGTGCAGCGCCC
AGAAATACGTCATTTGCGCGACAAGGTGCGTTCCCATGTGCAGTCCACAT
TGCAGCTGAATCCCCAACTGGATTCCATACACCGACCGATTAGTGTGTAC
AATATGCTAGACTTATACCTGAAACAGACTCTCGTTCAAGAGCCGCTGCC
GCTTTCGACATCGGAGGTGGATTTGTGTCAGCAATTGCTGGACGTGCTGA
GGCCGTTGACCAGCTCCATGCGTGAGCTAAGTCGAACACCATATCCGGCG
GCCAGCACAGCCCTGCCCATTGCCCAAACTCTGATCAACGAACTGAAGCA
GGAGAAGAGTGCGGAACACATGGTTGCCAGGGAAATACGCTTGTTCCTGG
TTCAGCAGCTGGAGGAGATCTTCGAACGAATGGAGCGCAACTTGCACCTG
GCATTGGCAAGTCTGCTGGACCCACGCTTTCGAAATATTCCCTTCCGGAG
TGGGGCCCTGGTGGCCCAGTACATGACTCAACTCTATGACATGATGCAGG
CGCATGTGGACAGCGGGGAGCAAGCTGTTGCAAAGCATCCGGAGAACCGT
GATCACTACGATATCTGGGCGGCATTCAAATCCTTTTCGCATGGGAAGCA
AAGGATTGTAAACGGCAGCAACGGTCCCGAGGCGGACGATGAGATAGCCA
GATACTTTTGCGCCGGCATGAGTACCCTGCGAGCCGATCCCTTTCAGCTC
TGGGAGGAACTGGCCGAAGCTCACCCCTTCCTGCACAACGTAGCACAGAG
GTACCTGCACGTTCCGGCCACCGCAGAGCCGGCGGATCGGCTATTTACGG
CCGAAGGAGCGGCGGTTGCGGCGCAGTACGCCAGACTAATCGAAAACAAC
ATGGAAAACATACTCTTCATGGCGGAAATTCCAACGAAGGAGTGGCAGTT
ATAGCGTAGTCCATAATCAATCCAAACCTAAGTTGAGCACTGTGTTTTTG
TACCCCTTTTATTAACTAATTTATTAATTTACATTTACAATAATGCGAAC
TATAAAATACATTTTTTAACTTTTTAGCTTCTCAAAAAAAAAAAAAAAA

RE30177.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-RA 2372 CG16863-RA 58..2292 1..2235 11160 99.9 Plus
CG16863-RB 2319 CG16863-RB 260..2239 256..2235 9885 99.9 Plus
CG16863.a 2127 CG16863.a 208..1177 256..1225 4835 99.8 Plus
CG16863.a 2127 CG16863.a 1176..2085 1326..2235 4550 100 Plus
CG16863-RB 2319 CG16863-RB 58..259 1..202 1010 100 Plus
CG16863.a 2127 CG16863.a 6..207 1..202 1010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13790377..13791976 634..2233 7985 99.9 Plus
chr2L 23010047 chr2L 13789675..13790307 1..633 3135 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13791665..13793266 634..2235 8010 100 Plus
2L 23513712 2L 13790963..13791595 1..633 3150 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13791665..13793266 634..2235 8010 100 Plus
2L 23513712 2L 13790963..13791595 1..633 3150 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 03:21:58 has no hits.

RE30177.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:23:08 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13789675..13790307 1..633 99 -> Plus
chr2L 13790377..13791976 634..2233 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:08:25 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1..137 66..202 100 == Plus
CG16863-RB 138..1986 256..2104 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:14:43 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1..137 66..202 100 == Plus
CG16863-RB 138..1986 256..2104 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:37 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1..137 66..202 100 == Plus
CG16863-RB 138..1986 256..2104 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:39:57 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1..137 66..202 100 == Plus
CG16863-RB 138..1986 256..2104 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:51 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1..137 66..202 100 == Plus
CG16863-RB 138..1986 256..2104 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:46:20 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 1..2233 1..2233 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:14:42 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 1..2233 1..2233 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:37 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 5..2237 1..2233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:39:57 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 1..2233 1..2233 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:51 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 5..2237 1..2233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:08 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13790963..13791595 1..633 99 -> Plus
2L 13791665..13793264 634..2233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:08 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13790963..13791595 1..633 99 -> Plus
2L 13791665..13793264 634..2233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:08 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13790963..13791595 1..633 99 -> Plus
2L 13791665..13793264 634..2233 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:37 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13790963..13791595 1..633 99 -> Plus
arm_2L 13791665..13793264 634..2233 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:16:41 Download gff for RE30177.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13790963..13791595 1..633 99 -> Plus
2L 13791665..13793264 634..2233 100   Plus

RE30177.pep Sequence

Translation from 436 to 2103

> RE30177.pep
MIKAAAEDRISTKSVGYAWVSPEATVSRTETVGGDDIIEFEPKEELDESE
KSPLPQIHAVPFAGHDNLKMEEPLPSESPFHKDIAFFVCRDRQSLQIVQG
EGFQHLVKVLCPTYRPPSAAKLEAIICRESEAQRSKLCQQLADISTLSLS
CSVHTNAESRSWMELVAHFHEGRQRISRTLSVLRLPDLFTSNDLVDRMDQ
VCQRFDIPKSRICCVSTRSSQLLEDAVTSFMGAHHHVPCFADQLNSILEE
VVQRPEIRHLRDKVRSHVQSTLQLNPQLDSIHRPISVYNMLDLYLKQTLV
QEPLPLSTSEVDLCQQLLDVLRPLTSSMRELSRTPYPAASTALPIAQTLI
NELKQEKSAEHMVAREIRLFLVQQLEEIFERMERNLHLALASLLDPRFRN
IPFRSGALVAQYMTQLYDMMQAHVDSGEQAVAKHPENRDHYDIWAAFKSF
SHGKQRIVNGSNGPEADDEIARYFCAGMSTLRADPFQLWEELAEAHPFLH
NVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENILFMAEIPT
KEWQL*

RE30177.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14255-PA 664 GF14255-PA 101..664 10..555 1148 43.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23879-PA 666 GG23879-PA 107..666 1..555 2331 79.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11112-PA 667 GH11112-PA 138..667 32..555 1117 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-PA 555 CG16863-PA 1..555 1..555 2866 100 Plus
CG16863-PB 661 CG16863-PB 107..661 1..555 2866 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18235-PA 1157 GI18235-PA 603..1157 4..555 1207 43.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21228-PA 670 GL21228-PA 129..670 30..555 1273 48.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14183-PA 673 GA14183-PA 132..673 30..555 1286 48.7 Plus
Dpse\GA25633-PA 534 GA25633-PA 27..530 71..545 234 19.3 Plus
Dpse\GA27881-PA 175 GA27881-PA 5..171 379..545 146 23.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15203-PA 659 GM15203-PA 107..659 1..555 2741 92.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23922-PA 661 GD23922-PA 107..661 1..555 2746 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18142-PA 683 GJ18142-PA 143..683 36..555 1159 44.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24227-PA 604 GK24227-PA 57..604 11..553 882 37.6 Plus
Dwil\GK16089-PA 467 GK16089-PA 1..430 87..486 160 20.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18680-PA 668 GE18680-PA 107..668 1..555 2391 81.5 Plus

RE30177.hyp Sequence

Translation from 436 to 2103

> RE30177.hyp
MIKAAAEDRISTKSVGYAWVSPEATVSRTETVGGDDIIEFEPKEELDESE
KSPLPQIHAVPFAGHDNLKMEEPLPSESPFHKDIAFFVCRDRQSLQIVQG
EGFQHLVKVLCPTYRPPSAAKLEAIICRESEAQRSKLCQQLADISTLSLS
CSVHTNAESRSWMELVAHFHEGRQRISRTLSVLRLPDLFTSNDLVDRMDQ
VCQRFDIPKSRICCVSTRSSQLLEDAVTSFMGAHHHVPCFADQLNSILEE
VVQRPEIRHLRDKVRSHVQSTLQLNPQLDSIHRPISVYNMLDLYLKQTLV
QEPLPLSTSEVDLCQQLLDVLRPLTSSMRELSRTPYPAASTALPIAQTLI
NELKQEKSAEHMVAREIRLFLVQQLEEIFERMERNLHLALASLLDPRFRN
IPFRSGALVAQYMTQLYDMMQAHVDSGEQAVAKHPENRDHYDIWAAFKSF
SHGKQRIVNGSNGPEADDEIARYFCAGMSTLRADPFQLWEELAEAHPFLH
NVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENILFMAEIPT
KEWQL*

RE30177.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-PA 555 CG16863-PA 1..555 1..555 2866 100 Plus
CG16863-PB 661 CG16863-PB 107..661 1..555 2866 100 Plus