BDGP Sequence Production Resources |
Search the DGRC for RE30284
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 302 |
Well: | 84 |
Vector: | pFlc-1 |
Associated Gene/Transcript | gk-RB |
Protein status: | RE30284.pep: gold |
Preliminary Size: | 237 |
Sequenced Size: | 1332 |
Gene | Date | Evidence |
---|---|---|
CG13695 | 2001-12-14 | Blastp of sequenced clone |
CG13695 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13695 | 2003-01-01 | Sim4 clustering to Release 3 |
gk | 2008-04-29 | Release 5.5 accounting |
gk | 2008-08-15 | Release 5.9 accounting |
gk | 2008-12-18 | 5.12 accounting |
1332 bp (1332 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071271
> RE30284.complete AGTGACATCGCAACTTTTGGACGAATCGGACGTACCGCTCCATATCGTCG TTATATCTTAGTACCTGTTGCTTTCGCGTGTGTTACCTGTATCTGTATTT TGGTTTTACAGTTACTAACGAGTTATGTGCGCTTGAATGCCAAATTTAAT TGCCGCTCTTTGCATGTTCGTCAGCAACAATTTGAAAACGTTTTCGTAAA GCGATTAAGAAACTACTTTCGTTTTTCCCCCCAACTTTCCATTTTCTTGC TCGTCGGCTTGCCATTGAAAAAAGTGTCAAAACCCAGGTGCTAACAAACC AAAGCAGAGATCAAACATCTGAAAGAAAAAAATACCGAAAACTATAAAGT TGTGAAACGCTTGTGAATTGATACAGTTTTATATTATGGCTCTCATTGAC ACCGCCTGGCGTTGTCGCCTCATGATCTTCGTTATCGTCTCGCTGCTCCT TGTGGGCGATCTTTTTGGATACGGCGGCGGCATGAAGTCCAACCACCCCA ATCCGCACTCGGTAAGATCGGCGCGGGGCGCGGTGCCGGGTGGTGCCCCA ACGGGTCCGGCGGCTGCAGCGGCCAGCAAGTTCCAGACCAAAAATGCCGA AATCGACATAACTGAAGAGCACGATTTCAATGAACTCTCAGCAGCAGCTC AATCCCTCAAGCCTGGAATGGCAGTGGTTACTGGGGCTAGTCTGAAGACC AAGTCCCAACTCACGGACGCCATCAAGGAATCATGTCTCCCCAAGATGCT CTGCGAACTGGCCTCCAAGGCGGATTACCAACTCAGCGAAAAGGAGCGGG AACTGCTAAGACTGATCAGATCTCCAACAATGCCCTGGATGATGAACATG CCGCCGAGCAAATGGTATTTTGCGGCCCACATGGGCGAACTCATGCGTCA CACTGGCGACAATCTCAGCGGACCTATGGGGTGCGCCAATCTCTGGCCAA ATTGCCCGATCAGCTCCAAGAAGCTGATGAAGCTCAGCTACAAAGTGAGG GTCTAGCCACTGGATCCGAACCTTAAGTATTAGGATGTAGGCGACCCCCC TCAACTTTTGTACCATATGTCTTCTCACCGTTCGATAAGCTTATCTTGTA AATTACCTTGTAAATTAGATCTAAGTACCGACTTGACTGAAGTGACTGTA GAACTGTAACCTCTTGTATCTGTATCTACTGGCTACAAGATCTAGGTAGC TTGTAATTACATATAGTACGTGTGACTAGTCACGATCCGATTTAGCATTA CGCCTAGTCGTTAGTTGGATGCTCCTGTAATTGTTAATAAATTACACTCT GGTGTGCAAACTCCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gk-RB | 1561 | gk-RB | 37..1354 | 1..1318 | 6560 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18129077..18129693 | 1..617 | 3070 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 18134570..18135069 | 817..1316 | 2470 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 18133150..18133353 | 616..819 | 1020 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18139404..18140020 | 1..617 | 3070 | 99.8 | Plus |
3L | 28110227 | 3L | 18144919..18145420 | 817..1318 | 2495 | 99.8 | Plus |
3L | 28110227 | 3L | 18143500..18143703 | 616..819 | 1020 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18132504..18133120 | 1..617 | 3070 | 99.8 | Plus |
3L | 28103327 | 3L | 18138019..18138520 | 817..1318 | 2495 | 99.8 | Plus |
3L | 28103327 | 3L | 18136600..18136803 | 616..819 | 1020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18129077..18129693 | 1..617 | 99 | -> | Plus |
chr3L | 18133152..18133353 | 618..819 | 100 | -> | Plus |
chr3L | 18134573..18135069 | 820..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..621 | 386..1006 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..621 | 386..1006 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..621 | 386..1006 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..621 | 386..1006 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..621 | 386..1006 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..1316 | 1..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..1316 | 1..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 3..1318 | 1..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 1..1316 | 1..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gk-RB | 3..1318 | 1..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18139404..18140020 | 1..617 | 99 | -> | Plus |
3L | 18143502..18143703 | 618..819 | 100 | -> | Plus |
3L | 18144922..18145418 | 820..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18139404..18140020 | 1..617 | 99 | -> | Plus |
3L | 18143502..18143703 | 618..819 | 100 | -> | Plus |
3L | 18144922..18145418 | 820..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18139404..18140020 | 1..617 | 99 | -> | Plus |
3L | 18143502..18143703 | 618..819 | 100 | -> | Plus |
3L | 18144922..18145418 | 820..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18132504..18133120 | 1..617 | 99 | -> | Plus |
arm_3L | 18136602..18136803 | 618..819 | 100 | -> | Plus |
arm_3L | 18138022..18138518 | 820..1316 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18132504..18133120 | 1..617 | 99 | -> | Plus |
3L | 18136602..18136803 | 618..819 | 100 | -> | Plus |
3L | 18138022..18138518 | 820..1316 | 99 | Plus |
Translation from 385 to 1005
> RE30284.hyp MALIDTAWRCRLMIFVIVSLLLVGDLFGYGGGMKSNHPNPHSVRSARGAV PGGAPTGPAAAAASKFQTKNAEIDITEEHDFNELSAAAQSLKPGMAVVTG ASLKTKSQLTDAIKESCLPKMLCELASKADYQLSEKERELLRLIRSPTMP WMMNMPPSKWYFAAHMGELMRHTGDNLSGPMGCANLWPNCPISSKKLMKL SYKVRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gk-PB | 206 | CG13695-PB | 1..206 | 1..206 | 1081 | 100 | Plus |
Translation from 385 to 1005
> RE30284.pep MALIDTAWRCRLMIFVIVSLLLVGDLFGYGGGMKSNHPNPHSVRSARGAV PGGAPTGPAAAAASKFQTKNAEIDITEEHDFNELSAAAQSLKPGMAVVTG ASLKTKSQLTDAIKESCLPKMLCELASKADYQLSEKERELLRLIRSPTMP WMMNMPPSKWYFAAHMGELMRHTGDNLSGPMGCANLWPNCPISSKKLMKL SYKVRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23616-PA | 209 | GF23616-PA | 1..209 | 1..206 | 829 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13652-PA | 206 | GG13652-PA | 1..206 | 1..206 | 936 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14449-PA | 207 | GH14449-PA | 1..207 | 1..206 | 833 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
geko-PB | 206 | CG13695-PB | 1..206 | 1..206 | 1081 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13584-PA | 202 | GI13584-PA | 1..202 | 1..206 | 781 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22865-PA | 217 | GL22865-PA | 1..217 | 1..206 | 865 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12465-PA | 217 | GA12465-PA | 1..217 | 1..206 | 865 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14967-PA | 204 | GM14967-PA | 1..167 | 1..167 | 729 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14747-PA | 206 | GD14747-PA | 1..206 | 1..206 | 960 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13922-PA | 203 | GJ13922-PA | 1..203 | 1..206 | 864 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11100-PA | 214 | GK11100-PA | 1..214 | 1..206 | 792 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19950-PA | 206 | GE19950-PA | 1..205 | 1..205 | 925 | 91.7 | Plus |