BDGP Sequence Production Resources |
Search the DGRC for RE30427
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 304 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | olf186-F-RA |
Protein status: | RE30427.pep: gold |
Sequenced Size: | 2635 |
Gene | Date | Evidence |
---|---|---|
CG11430 | 2001-12-14 | Blastp of sequenced clone |
CG14489 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11430 | 2003-01-01 | Sim4 clustering to Release 3 |
olf186-F | 2008-04-29 | Release 5.5 accounting |
olf186-F | 2008-08-15 | Release 5.9 accounting |
olf186-F | 2008-12-18 | 5.12 accounting |
2635 bp (2635 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071273
> RE30427.complete CATTCATTCGGAGCGCTCGCAGAAAAGCGAACGTGTGTGCTCGTCGCCGC CGTGTTTTTCTTGTATTTCCACTATTTTCTGTTGCGTTTCGCGGTCTTCT TGTATCTTTTTTGCATTTGTTCTTTTTTTTTTTTGTTGTTGCTGTGCTTC GAGATATTCTTGTATTAATTTTTATCCGCTTGGCGTGTGTTTCGTGTGGC TTTTTGTGTGCATATTTCTAAGCATCGTAACTGTTTGTTCGTGGGTCTGA AGCATTTCATTTGCACAACAAACAATGTGCAAATATTTGGCCGACATTTG ACTACACTAAAATAATTATAATCAGTGACAAGATAAAACCAAAAAAAAAA AATAAGCTCGCTGATGAACCGCAGATAAGACGGCGCTCCTCGAAGTAGAT CATCTGCATAAACAGCACCCAAAGGAGTGACAACCCAGTCGTCAAGCGGA GACCCATATTTATCACCTTCAGTTAATTATTCGGAACGATTCGCGACGGT TGTGGGTTCCAGCTACATAATTGTCTTAGATGCTTTGCCTATTTATGAAA GTTCCACTGTGTTGGTGTTATGATGCGATGGCATAGAAAGTGCACTAGCT GAAGCCGGAAAAGTTGCCAGAACGAACACGTGCTTAAAACAAAAAAAAAC TATAAATAGCAACTAACAACAAACTTTAGCCTATCGTTAGTGCCTAATTT ATAGTTAAAAACCAAAAATAGTGTGACTCGGCCAGCAGAAATACAGACGT ACTTAAATCCGCAGGAGAAATCGCTAGCCAAAAATCATGTCTGTGTGGAC CACGGCCAACAATTCGGGCCTAGAGACGCCAACAAAGTCGCCGATCACGT CGTCGGTTCCGCGGGCAGCGAGAAGTTCTGCAGTGATCACCACTGGAAAT CACCAGCAGCACCACTTCCAGCACGTTGTGGCCGCCGCCGTTGCAGCCGC CACTTCAGTGGCCACCGGTCATCAGTTCCAGCAACAGTTCCCGCTGCACG CACATCCGCATCCACAGCACCACAGCAACAGTCCCACGGGTAGCGGCAGC AACAGCAACAACAGCGCAGGTTTCCAGCGCACCAGCATCAGCAACTCGCT GCTGCAGTTCCCGCCGCCCCCGCCCCCTTCCTCACAGAACCAGGCGAAGC CGCGCGGACACCATCGCACCGCCAGCAGCAGCATGTCGCAGTCCGGCGAG GATCTCCACTCGCCCACCTACCTGTCCTGGCGGAAGCTCCAGCTTAGTCG GGCCAAGCTAAAGGCATCCAGCAAGACGTCCGCCCTGCTCTCCGGATTCG CCATGGTGGCGATGGTGGAGGTGCAACTGGATCACGATACGAATGTACCA CCGGGCATGCTGATAGCCTTCGCCATCTGCACCACCCTCCTGGTGGCGGT GCACATGCTGGCCCTGATGATCAGCACCTGTATCCTGCCAAATATTGAGA CGGTGTGTAATTTGCATAGTATTTCCCTGGTCCACGAATCGCCACACGAG CGTCTCCATTGGTACATTGAAACGGCGTGGGCATTCTCCACGCTGCTGGG ACTCATACTCTTTCTACTGGAGATAGCCATCCTGTGCTGGGTGAAATTCT ATGACCTAAGTCCGCCGGCGGCTTGGTCAGCGTGTGTGGTCCTCATACCG GTGATGATCATCTTTATGGCCTTCGCCATTCACTTCTATCGCTCCCTGGT GTCGCACAAATATGAGGTGACAGTCTCGGGCATCCGTGAGCTGGAGATGC TCAAGGAGCAGATGGAGCAGGATCATTTGGAGCATCACAATAACATACGA AATAATGGCATGAACTATGGCGCATCCGGGGACATTGTCTAGCATCACTT GGCGTATCCGCACAAGTGGATCGAACGAAAAAGACAGCGGCTCAGGGTAA GCTTCAGATTATTTTTAGTGAAACACACATATTGTAAATTTGTAGTTGAT TAAAATTGTGATACGCGGAATTCAGTAGATTTCTACTATATATATATATA TATGTGCGAGTGCTGCTGTAGTCCTTTATTTTACTTATGGCAATTGCGGA TTAGCACGGATATTGACAATGATAAAAGACCCCAATTAAAGCAATACTTC GGATGAATATTCCTCAAAAAATTAGCTGATATTTGTTACATATTTATATT GCGTGTATTTTAAATTGTATGCCATGCCGGATTTTCTTTTTTTGCAACCA TCCTTAGGCAGTCTTCCCTTTTTACGTTTAAGACACAACTTGATTGTCAA ATTTAATATTAAGCCAATTGTGTAAGCGAAACCGCGCTGTAATTTATACC ATATAATTTATGATTAAAAGAATTTTCTATATATATGGTGTTGGAGTTTT ATTTTTAATCGTGATATATAGCTGAACAATAGATGCGGATTAAAAGAATG CAAAATTTTAGAGACAATTTGATATATTTTATATGCAACATAAAACAATT GTAAAATAAAGTATTTGAAAATGTACTGCAATATTTATATACGAATTATA TTCATAGGTATTCCAATAGTTTTGGAAAATATAACAGTCTATTTTCGATC TTTACCGATGTAAGCTAAATAGCGCTGTAATTTATATACGACTGATTAAA CGATTTTTACTACATACACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
olf186-F-RB | 2617 | olf186-F-RB | 1..2617 | 1..2618 | 13050 | 99.9 | Plus |
olf186-F.d | 2305 | olf186-F.d | 512..2305 | 747..2540 | 8970 | 100 | Plus |
olf186-F.f | 2109 | olf186-F.f | 316..2109 | 747..2540 | 8970 | 100 | Plus |
olf186-F.d | 2305 | olf186-F.d | 1..511 | 10..521 | 2520 | 99.8 | Plus |
olf186-F.f | 2109 | olf186-F.f | 1..315 | 206..521 | 1540 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13746436..13747760 | 1305..2619 | 6320 | 98.6 | Plus |
chr2R | 21145070 | chr2R | 13730625..13731142 | 1..521 | 2420 | 98.5 | Plus |
chr2R | 21145070 | chr2R | 13738238..13738643 | 744..1149 | 2000 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 13731369..13731587 | 522..746 | 970 | 96.4 | Plus |
chr2R | 21145070 | chr2R | 13744819..13744979 | 1148..1308 | 790 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17859257..17860571 | 1305..2619 | 6575 | 100 | Plus |
2R | 25286936 | 2R | 17843445..17843964 | 1..521 | 2555 | 99.8 | Plus |
2R | 25286936 | 2R | 17851055..17851460 | 744..1149 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 17844191..17844415 | 522..746 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 17857640..17857800 | 1148..1308 | 805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17860456..17861770 | 1305..2619 | 6575 | 100 | Plus |
2R | 25260384 | 2R | 17844644..17845163 | 1..521 | 2565 | 99.8 | Plus |
2R | 25260384 | 2R | 17852254..17852659 | 744..1149 | 2030 | 100 | Plus |
2R | 25260384 | 2R | 17845390..17845614 | 522..746 | 1125 | 100 | Plus |
2R | 25260384 | 2R | 17858839..17858999 | 1148..1308 | 805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6958 | 897..1128 | 253 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6952 | 865..1091 | 247 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6915 | 982..1183 | 222 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6887 | 944..1095 | 205 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6862 | 970..1097 | 203 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2518 | 970..1183 | 192 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2505 | 899..1095 | 189 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2498 | 991..1184 | 185 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6819 | 1002..1106 | 183 | 71.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6858 | 970..1106 | 177 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6882 | 1042..1183 | 177 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2539 | 970..1183 | 166 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 979..1095 | 164 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2857 | 981..1096 | 162 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2467 | 1020..1183 | 154 | 59 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1155 | 971..1066 | 140 | 61.9 | Plus |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3731..3853 | 2401..2523 | 139 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1154 | 991..1095 | 137 | 64.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1052..1148 | 1004..1095 | 137 | 67 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1594..1740 | 2316..2453 | 126 | 59.9 | Plus |
412 | 7567 | 412 412 7567bp | 6608..6671 | 162..98 | 125 | 72.1 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1438..1676 | 2287..2524 | 121 | 51.9 | Plus |
Dbuz\BuT5 | 669 | Dbuz\BuT5 BUT5 669bp | 597..668 | 2411..2487 | 120 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2643 | 1040..1095 | 118 | 67.9 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 1774..1897 | 167..50 | 118 | 59.7 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 36..178 | 2544..2405 | 115 | 55.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13730625..13731142 | 1..521 | 98 | -> | Plus |
chr2R | 13731369..13731587 | 522..746 | 96 | -> | Plus |
chr2R | 13738241..13738643 | 747..1149 | 99 | -> | Plus |
chr2R | 13744821..13744976 | 1150..1305 | 99 | -> | Plus |
chr2R | 13746437..13747760 | 1306..2619 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RA | 1..1056 | 787..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RA | 1..1056 | 787..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 1..1056 | 787..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RA | 1..1056 | 787..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 1..1056 | 787..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 1..2617 | 1..2618 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 1..2617 | 1..2618 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 4..2621 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 1..2617 | 1..2618 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
olf186-F-RB | 4..2621 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17843445..17843964 | 1..521 | 99 | -> | Plus |
2R | 17844191..17844415 | 522..746 | 100 | -> | Plus |
2R | 17851058..17851460 | 747..1149 | 100 | -> | Plus |
2R | 17857642..17857797 | 1150..1305 | 100 | -> | Plus |
2R | 17859258..17860571 | 1306..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17843445..17843964 | 1..521 | 99 | -> | Plus |
2R | 17844191..17844415 | 522..746 | 100 | -> | Plus |
2R | 17851058..17851460 | 747..1149 | 100 | -> | Plus |
2R | 17857642..17857797 | 1150..1305 | 100 | -> | Plus |
2R | 17859258..17860571 | 1306..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17843445..17843964 | 1..521 | 99 | -> | Plus |
2R | 17844191..17844415 | 522..746 | 100 | -> | Plus |
2R | 17851058..17851460 | 747..1149 | 100 | -> | Plus |
2R | 17857642..17857797 | 1150..1305 | 100 | -> | Plus |
2R | 17859258..17860571 | 1306..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13730950..13731469 | 1..521 | 99 | -> | Plus |
arm_2R | 13731696..13731920 | 522..746 | 100 | -> | Plus |
arm_2R | 13738563..13738965 | 747..1149 | 100 | -> | Plus |
arm_2R | 13745147..13745302 | 1150..1305 | 100 | -> | Plus |
arm_2R | 13746763..13748076 | 1306..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17844644..17845163 | 1..521 | 99 | -> | Plus |
2R | 17845390..17845614 | 522..746 | 100 | -> | Plus |
2R | 17852257..17852659 | 747..1149 | 100 | -> | Plus |
2R | 17858841..17858996 | 1150..1305 | 100 | -> | Plus |
2R | 17860457..17861770 | 1306..2619 | 100 | Plus |
Translation from 786 to 1841
> RE30427.pep MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI V*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11682-PA | 604 | GF11682-PA | 375..604 | 122..351 | 1094 | 92.6 | Plus |
Dana\GF11682-PA | 604 | GF11682-PA | 1..120 | 1..123 | 260 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21831-PA | 353 | GG21831-PA | 1..353 | 1..351 | 1808 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22031-PA | 376 | GH22031-PA | 1..376 | 1..351 | 1138 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
olf186-F-PF | 351 | CG11430-PF | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PA | 351 | CG11430-PA | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PB | 351 | CG11430-PB | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PG | 507 | CG11430-PG | 256..507 | 108..351 | 1208 | 94 | Plus |
olf186-F-PE | 507 | CG11430-PE | 256..507 | 108..351 | 1208 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19120-PA | 364 | GI19120-PA | 1..364 | 1..351 | 1191 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17231-PA | 529 | GL17231-PA | 282..529 | 112..351 | 1025 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30441-PA | 350 | GA30441-PA | 1..350 | 1..351 | 1133 | 77.7 | Plus |
Dpse\GA30441-PB | 531 | GA30441-PB | 284..531 | 112..351 | 1024 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21831-PA | 506 | GM21831-PA | 269..506 | 117..351 | 1193 | 97.9 | Plus |
Dsec\GM21830-PA | 407 | GM21830-PA | 1..121 | 1..121 | 622 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11325-PA | 507 | GD11325-PA | 270..507 | 117..351 | 1194 | 97.9 | Plus |
Dsim\GD11324-PA | 134 | GD11324-PA | 1..123 | 1..121 | 597 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22252-PA | 533 | GJ22252-PA | 307..533 | 121..351 | 1095 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22234-PA | 360 | GK22234-PA | 1..360 | 1..351 | 1181 | 76.2 | Plus |
Dwil\GK23464-PA | 219 | GK23464-PA | 1..219 | 133..351 | 1037 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11907-PA | 353 | GE11907-PA | 1..353 | 1..351 | 1824 | 98 | Plus |
Translation from 786 to 1841
> RE30427.hyp MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI V*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
olf186-F-PF | 351 | CG11430-PF | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PA | 351 | CG11430-PA | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PB | 351 | CG11430-PB | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PG | 507 | CG11430-PG | 256..507 | 108..351 | 1208 | 94 | Plus |
olf186-F-PE | 507 | CG11430-PE | 256..507 | 108..351 | 1208 | 94 | Plus |