Clone RE30427 Report

Search the DGRC for RE30427

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:304
Well:27
Vector:pFlc-1
Associated Gene/Transcriptolf186-F-RA
Protein status:RE30427.pep: gold
Sequenced Size:2635

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11430 2001-12-14 Blastp of sequenced clone
CG14489 2002-01-01 Sim4 clustering to Release 2
CG11430 2003-01-01 Sim4 clustering to Release 3
olf186-F 2008-04-29 Release 5.5 accounting
olf186-F 2008-08-15 Release 5.9 accounting
olf186-F 2008-12-18 5.12 accounting

Clone Sequence Records

RE30427.complete Sequence

2635 bp (2635 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071273

> RE30427.complete
CATTCATTCGGAGCGCTCGCAGAAAAGCGAACGTGTGTGCTCGTCGCCGC
CGTGTTTTTCTTGTATTTCCACTATTTTCTGTTGCGTTTCGCGGTCTTCT
TGTATCTTTTTTGCATTTGTTCTTTTTTTTTTTTGTTGTTGCTGTGCTTC
GAGATATTCTTGTATTAATTTTTATCCGCTTGGCGTGTGTTTCGTGTGGC
TTTTTGTGTGCATATTTCTAAGCATCGTAACTGTTTGTTCGTGGGTCTGA
AGCATTTCATTTGCACAACAAACAATGTGCAAATATTTGGCCGACATTTG
ACTACACTAAAATAATTATAATCAGTGACAAGATAAAACCAAAAAAAAAA
AATAAGCTCGCTGATGAACCGCAGATAAGACGGCGCTCCTCGAAGTAGAT
CATCTGCATAAACAGCACCCAAAGGAGTGACAACCCAGTCGTCAAGCGGA
GACCCATATTTATCACCTTCAGTTAATTATTCGGAACGATTCGCGACGGT
TGTGGGTTCCAGCTACATAATTGTCTTAGATGCTTTGCCTATTTATGAAA
GTTCCACTGTGTTGGTGTTATGATGCGATGGCATAGAAAGTGCACTAGCT
GAAGCCGGAAAAGTTGCCAGAACGAACACGTGCTTAAAACAAAAAAAAAC
TATAAATAGCAACTAACAACAAACTTTAGCCTATCGTTAGTGCCTAATTT
ATAGTTAAAAACCAAAAATAGTGTGACTCGGCCAGCAGAAATACAGACGT
ACTTAAATCCGCAGGAGAAATCGCTAGCCAAAAATCATGTCTGTGTGGAC
CACGGCCAACAATTCGGGCCTAGAGACGCCAACAAAGTCGCCGATCACGT
CGTCGGTTCCGCGGGCAGCGAGAAGTTCTGCAGTGATCACCACTGGAAAT
CACCAGCAGCACCACTTCCAGCACGTTGTGGCCGCCGCCGTTGCAGCCGC
CACTTCAGTGGCCACCGGTCATCAGTTCCAGCAACAGTTCCCGCTGCACG
CACATCCGCATCCACAGCACCACAGCAACAGTCCCACGGGTAGCGGCAGC
AACAGCAACAACAGCGCAGGTTTCCAGCGCACCAGCATCAGCAACTCGCT
GCTGCAGTTCCCGCCGCCCCCGCCCCCTTCCTCACAGAACCAGGCGAAGC
CGCGCGGACACCATCGCACCGCCAGCAGCAGCATGTCGCAGTCCGGCGAG
GATCTCCACTCGCCCACCTACCTGTCCTGGCGGAAGCTCCAGCTTAGTCG
GGCCAAGCTAAAGGCATCCAGCAAGACGTCCGCCCTGCTCTCCGGATTCG
CCATGGTGGCGATGGTGGAGGTGCAACTGGATCACGATACGAATGTACCA
CCGGGCATGCTGATAGCCTTCGCCATCTGCACCACCCTCCTGGTGGCGGT
GCACATGCTGGCCCTGATGATCAGCACCTGTATCCTGCCAAATATTGAGA
CGGTGTGTAATTTGCATAGTATTTCCCTGGTCCACGAATCGCCACACGAG
CGTCTCCATTGGTACATTGAAACGGCGTGGGCATTCTCCACGCTGCTGGG
ACTCATACTCTTTCTACTGGAGATAGCCATCCTGTGCTGGGTGAAATTCT
ATGACCTAAGTCCGCCGGCGGCTTGGTCAGCGTGTGTGGTCCTCATACCG
GTGATGATCATCTTTATGGCCTTCGCCATTCACTTCTATCGCTCCCTGGT
GTCGCACAAATATGAGGTGACAGTCTCGGGCATCCGTGAGCTGGAGATGC
TCAAGGAGCAGATGGAGCAGGATCATTTGGAGCATCACAATAACATACGA
AATAATGGCATGAACTATGGCGCATCCGGGGACATTGTCTAGCATCACTT
GGCGTATCCGCACAAGTGGATCGAACGAAAAAGACAGCGGCTCAGGGTAA
GCTTCAGATTATTTTTAGTGAAACACACATATTGTAAATTTGTAGTTGAT
TAAAATTGTGATACGCGGAATTCAGTAGATTTCTACTATATATATATATA
TATGTGCGAGTGCTGCTGTAGTCCTTTATTTTACTTATGGCAATTGCGGA
TTAGCACGGATATTGACAATGATAAAAGACCCCAATTAAAGCAATACTTC
GGATGAATATTCCTCAAAAAATTAGCTGATATTTGTTACATATTTATATT
GCGTGTATTTTAAATTGTATGCCATGCCGGATTTTCTTTTTTTGCAACCA
TCCTTAGGCAGTCTTCCCTTTTTACGTTTAAGACACAACTTGATTGTCAA
ATTTAATATTAAGCCAATTGTGTAAGCGAAACCGCGCTGTAATTTATACC
ATATAATTTATGATTAAAAGAATTTTCTATATATATGGTGTTGGAGTTTT
ATTTTTAATCGTGATATATAGCTGAACAATAGATGCGGATTAAAAGAATG
CAAAATTTTAGAGACAATTTGATATATTTTATATGCAACATAAAACAATT
GTAAAATAAAGTATTTGAAAATGTACTGCAATATTTATATACGAATTATA
TTCATAGGTATTCCAATAGTTTTGGAAAATATAACAGTCTATTTTCGATC
TTTACCGATGTAAGCTAAATAGCGCTGTAATTTATATACGACTGATTAAA
CGATTTTTACTACATACACAAAAAAAAAAAAAAAA

RE30427.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RB 2617 olf186-F-RB 1..2617 1..2618 13050 99.9 Plus
olf186-F.d 2305 olf186-F.d 512..2305 747..2540 8970 100 Plus
olf186-F.f 2109 olf186-F.f 316..2109 747..2540 8970 100 Plus
olf186-F.d 2305 olf186-F.d 1..511 10..521 2520 99.8 Plus
olf186-F.f 2109 olf186-F.f 1..315 206..521 1540 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13746436..13747760 1305..2619 6320 98.6 Plus
chr2R 21145070 chr2R 13730625..13731142 1..521 2420 98.5 Plus
chr2R 21145070 chr2R 13738238..13738643 744..1149 2000 99.5 Plus
chr2R 21145070 chr2R 13731369..13731587 522..746 970 96.4 Plus
chr2R 21145070 chr2R 13744819..13744979 1148..1308 790 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17859257..17860571 1305..2619 6575 100 Plus
2R 25286936 2R 17843445..17843964 1..521 2555 99.8 Plus
2R 25286936 2R 17851055..17851460 744..1149 2030 100 Plus
2R 25286936 2R 17844191..17844415 522..746 1125 100 Plus
2R 25286936 2R 17857640..17857800 1148..1308 805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17860456..17861770 1305..2619 6575 100 Plus
2R 25260384 2R 17844644..17845163 1..521 2565 99.8 Plus
2R 25260384 2R 17852254..17852659 744..1149 2030 100 Plus
2R 25260384 2R 17845390..17845614 522..746 1125 100 Plus
2R 25260384 2R 17858839..17858999 1148..1308 805 100 Plus
Blast to na_te.dros performed 2019-03-16 21:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6958 897..1128 253 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6952 865..1091 247 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6915 982..1183 222 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6887 944..1095 205 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6862 970..1097 203 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2518 970..1183 192 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2505 899..1095 189 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2498 991..1184 185 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6819 1002..1106 183 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6858 970..1106 177 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6882 1042..1183 177 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2539 970..1183 166 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2424 979..1095 164 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2857 981..1096 162 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2467 1020..1183 154 59 Plus
roo 9092 roo DM_ROO 9092bp 1059..1155 971..1066 140 61.9 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 3731..3853 2401..2523 139 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1054..1154 991..1095 137 64.5 Plus
roo 9092 roo DM_ROO 9092bp 1052..1148 1004..1095 137 67 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1594..1740 2316..2453 126 59.9 Plus
412 7567 412 412 7567bp 6608..6671 162..98 125 72.1 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1438..1676 2287..2524 121 51.9 Plus
Dbuz\BuT5 669 Dbuz\BuT5 BUT5 669bp 597..668 2411..2487 120 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2588..2643 1040..1095 118 67.9 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1774..1897 167..50 118 59.7 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 36..178 2544..2405 115 55.9 Minus

RE30427.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:08:58 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13730625..13731142 1..521 98 -> Plus
chr2R 13731369..13731587 522..746 96 -> Plus
chr2R 13738241..13738643 747..1149 99 -> Plus
chr2R 13744821..13744976 1150..1305 99 -> Plus
chr2R 13746437..13747760 1306..2619 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:53:55 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 1..1056 787..1842 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:00 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 1..1056 787..1842 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:20 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1..1056 787..1842 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:15 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 1..1056 787..1842 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:01 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1..1056 787..1842 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:54 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1..2617 1..2618 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:00 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1..2617 1..2618 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:20 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 4..2621 1..2619 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:15 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1..2617 1..2618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:01 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 4..2621 1..2619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:58 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17843445..17843964 1..521 99 -> Plus
2R 17844191..17844415 522..746 100 -> Plus
2R 17851058..17851460 747..1149 100 -> Plus
2R 17857642..17857797 1150..1305 100 -> Plus
2R 17859258..17860571 1306..2619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:58 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17843445..17843964 1..521 99 -> Plus
2R 17844191..17844415 522..746 100 -> Plus
2R 17851058..17851460 747..1149 100 -> Plus
2R 17857642..17857797 1150..1305 100 -> Plus
2R 17859258..17860571 1306..2619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:58 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17843445..17843964 1..521 99 -> Plus
2R 17844191..17844415 522..746 100 -> Plus
2R 17851058..17851460 747..1149 100 -> Plus
2R 17857642..17857797 1150..1305 100 -> Plus
2R 17859258..17860571 1306..2619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:20 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13730950..13731469 1..521 99 -> Plus
arm_2R 13731696..13731920 522..746 100 -> Plus
arm_2R 13738563..13738965 747..1149 100 -> Plus
arm_2R 13745147..13745302 1150..1305 100 -> Plus
arm_2R 13746763..13748076 1306..2619 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:28 Download gff for RE30427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17844644..17845163 1..521 99 -> Plus
2R 17845390..17845614 522..746 100 -> Plus
2R 17852257..17852659 747..1149 100 -> Plus
2R 17858841..17858996 1150..1305 100 -> Plus
2R 17860457..17861770 1306..2619 100   Plus

RE30427.pep Sequence

Translation from 786 to 1841

> RE30427.pep
MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA
AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS
ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK
LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT
LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF
STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF
YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI
V*

RE30427.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11682-PA 604 GF11682-PA 375..604 122..351 1094 92.6 Plus
Dana\GF11682-PA 604 GF11682-PA 1..120 1..123 260 65.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21831-PA 353 GG21831-PA 1..353 1..351 1808 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22031-PA 376 GH22031-PA 1..376 1..351 1138 70.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-PF 351 CG11430-PF 1..351 1..351 1838 100 Plus
olf186-F-PA 351 CG11430-PA 1..351 1..351 1838 100 Plus
olf186-F-PB 351 CG11430-PB 1..351 1..351 1838 100 Plus
olf186-F-PG 507 CG11430-PG 256..507 108..351 1208 94 Plus
olf186-F-PE 507 CG11430-PE 256..507 108..351 1208 94 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19120-PA 364 GI19120-PA 1..364 1..351 1191 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17231-PA 529 GL17231-PA 282..529 112..351 1025 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30441-PA 350 GA30441-PA 1..350 1..351 1133 77.7 Plus
Dpse\GA30441-PB 531 GA30441-PB 284..531 112..351 1024 87.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21831-PA 506 GM21831-PA 269..506 117..351 1193 97.9 Plus
Dsec\GM21830-PA 407 GM21830-PA 1..121 1..121 622 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11325-PA 507 GD11325-PA 270..507 117..351 1194 97.9 Plus
Dsim\GD11324-PA 134 GD11324-PA 1..123 1..121 597 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22252-PA 533 GJ22252-PA 307..533 121..351 1095 89.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22234-PA 360 GK22234-PA 1..360 1..351 1181 76.2 Plus
Dwil\GK23464-PA 219 GK23464-PA 1..219 133..351 1037 93.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11907-PA 353 GE11907-PA 1..353 1..351 1824 98 Plus

RE30427.hyp Sequence

Translation from 786 to 1841

> RE30427.hyp
MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA
AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS
ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK
LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT
LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF
STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF
YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI
V*

RE30427.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-PF 351 CG11430-PF 1..351 1..351 1838 100 Plus
olf186-F-PA 351 CG11430-PA 1..351 1..351 1838 100 Plus
olf186-F-PB 351 CG11430-PB 1..351 1..351 1838 100 Plus
olf186-F-PG 507 CG11430-PG 256..507 108..351 1208 94 Plus
olf186-F-PE 507 CG11430-PE 256..507 108..351 1208 94 Plus