BDGP Sequence Production Resources |
Search the DGRC for RE30433
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 304 |
Well: | 33 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4306-RA |
Protein status: | RE30433.pep: gold |
Preliminary Size: | 1016 |
Sequenced Size: | 1041 |
Gene | Date | Evidence |
---|---|---|
CG4306 | 2001-12-17 | Blastp of sequenced clone |
CG4306 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4306 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4306 | 2008-04-29 | Release 5.5 accounting |
CG4306 | 2008-08-15 | Release 5.9 accounting |
CG4306 | 2008-12-18 | 5.12 accounting |
1041 bp (1041 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071274
> RE30433.complete GTAGACGTTCAACCTGAAGGCAGATCGTATCGCTTGGAGCTGTCAAGTCT AAATAAATATATTCATATATACGGGTATACATTTATAGAATGAACTACGA GTGTCTTATCGGTGTTCTAAGCTGCCTATTGGTAGCTCTCCCCAAAGGAA ATTGCCACAGCATCAGTGGTTTAAATTCCACCTTGAATCTACCAGAGATT CGAGGTGACCAGTTCCTGTACTTTGGATTCGGAAGCAATATGCTGATCAA GAGAATTCACATCCAGAACCCTTCGGCGGTAAGAATTGGTCCGGCCCTGC TACCCGATTATCGATTGGACTTTGCCTTGGAATCAGCCGGTTGGAGCGGT TCTGTGGCCACCATCGTTCCCACCCAGGGTGATCATGTCTGGGGAACCCT CTGGAAGATCGATCTAAGTAATCTGCCGGATATAGACAGTCAAGAAGGCG TTAGTCAAGGCATTTATGAGCCTCGCACCGTTTACGTAAAACTCCATGGG GAATCTGAATCAACTCCTGCCCGAGCTTATCTACTGACCAAGCAGCCAGA GAGCAATCTGTACGAACTGCCTAAGGACTCCATTCCCTTATCCAGACAGC CCTCGAAAACATATCTGCAATGTCTCGTTAAAGGCGCTATTGAGAGCTCC GTTCCGGAGGATTATGTTCAGCGATTGAGGAGCATTAAGCATAATGGACA AGTTAACTCCTATCTGGAACGAAAACTGGAACTGGGAGGGGTAACCCTTT AAGTAATCAAAACATTAAATAAATTTCATAGTGCCTTTGACATTTTTATC AAAGATTTCTGAAAATATGTGGAGATTCACCTAAATAATACAATATTAAT CAATACGTTTAATAACTAAATTATCGTCTTTATTGTTACACTGCAGCCAT GAATGAATGAATCTTTGAATCTTTTGTAATAACATTCAAATTGTGCCATG TAATATTGCTACGCGAAATAAATCGCTTAAATCCATTTTAGTTTTATTTT ACCAATAAATGTCTTCTTGTGCCACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4306-RA | 1219 | CG4306-RA | 131..1153 | 1..1023 | 5115 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord | 7404 | accord ACCORD 7404bp | 4145..4262 | 743..864 | 114 | 58.5 | Plus |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3360..3429 | 836..769 | 110 | 65.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18451556..18452141 | 440..1025 | 99 | <- | Minus |
chr3L | 18452301..18452739 | 1..439 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..663 | 90..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..663 | 90..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..663 | 90..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..663 | 90..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..663 | 90..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..1023 | 1..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..1023 | 1..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 7..1029 | 1..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 1..1025 | 1..1025 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4306-RA | 7..1029 | 1..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18461955..18462540 | 440..1025 | 99 | <- | Minus |
3L | 18462719..18463157 | 1..439 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18461955..18462540 | 440..1025 | 99 | <- | Minus |
3L | 18462719..18463157 | 1..439 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18461955..18462540 | 440..1025 | 99 | <- | Minus |
3L | 18462719..18463157 | 1..439 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18455055..18455640 | 440..1025 | 99 | <- | Minus |
arm_3L | 18455819..18456257 | 1..439 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18455055..18455640 | 440..1025 | 99 | <- | Minus |
3L | 18455819..18456257 | 1..439 | 100 | Minus |
Translation from 89 to 751
> RE30433.hyp MNYECLIGVLSCLLVALPKGNCHSISGLNSTLNLPEIRGDQFLYFGFGSN MLIKRIHIQNPSAVRIGPALLPDYRLDFALESAGWSGSVATIVPTQGDHV WGTLWKIDLSNLPDIDSQEGVSQGIYEPRTVYVKLHGESESTPARAYLLT KQPESNLYELPKDSIPLSRQPSKTYLQCLVKGAIESSVPEDYVQRLRSIK HNGQVNSYLERKLELGGVTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4306-PA | 220 | CG4306-PA | 1..220 | 1..220 | 1149 | 100 | Plus |
CG32196-PB | 195 | CG32196-PB | 15..194 | 42..220 | 479 | 54.4 | Plus |
CG32196-PC | 154 | CG32196-PC | 3..153 | 71..220 | 371 | 51 | Plus |
Translation from 89 to 751
> RE30433.pep MNYECLIGVLSCLLVALPKGNCHSISGLNSTLNLPEIRGDQFLYFGFGSN MLIKRIHIQNPSAVRIGPALLPDYRLDFALESAGWSGSVATIVPTQGDHV WGTLWKIDLSNLPDIDSQEGVSQGIYEPRTVYVKLHGESESTPARAYLLT KQPESNLYELPKDSIPLSRQPSKTYLQCLVKGAIESSVPEDYVQRLRSIK HNGQVNSYLERKLELGGVTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10818-PA | 229 | GF10818-PA | 1..229 | 1..220 | 818 | 68.6 | Plus |
Dana\GF10819-PA | 172 | GF10819-PA | 1..171 | 51..220 | 403 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15742-PA | 220 | GG15742-PA | 1..220 | 1..220 | 1017 | 86.4 | Plus |
Dere\GG15743-PA | 208 | GG15743-PA | 1..161 | 51..215 | 431 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17111-PA | 220 | GH17111-PA | 25..218 | 28..220 | 620 | 61.9 | Plus |
Dgri\GH23200-PA | 220 | GH23200-PA | 25..218 | 28..220 | 616 | 61.9 | Plus |
Dgri\GH23201-PA | 186 | GH23201-PA | 4..185 | 41..220 | 449 | 50.5 | Plus |
Dgri\GH17112-PA | 186 | GH17112-PA | 4..185 | 41..220 | 446 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4306-PA | 220 | CG4306-PA | 1..220 | 1..220 | 1149 | 100 | Plus |
CG32196-PB | 195 | CG32196-PB | 15..194 | 42..220 | 479 | 54.4 | Plus |
CG32196-PC | 154 | CG32196-PC | 3..153 | 71..220 | 371 | 51 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11714-PA | 213 | GI11714-PA | 1..213 | 1..220 | 564 | 52 | Plus |
Dmoj\GI11715-PA | 190 | GI11715-PA | 2..189 | 39..220 | 452 | 51.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22703-PA | 196 | GL22703-PA | 1..195 | 1..220 | 494 | 50 | Plus |
Dper\GL22704-PA | 173 | GL22704-PA | 1..172 | 51..220 | 434 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18096-PA | 237 | GA18096-PA | 1..236 | 1..220 | 701 | 60.2 | Plus |
Dpse\GA16751-PA | 173 | GA16751-PA | 1..172 | 51..220 | 434 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14939-PA | 169 | GM14939-PA | 10..169 | 61..220 | 696 | 85.6 | Plus |
Dsec\GM14941-PA | 172 | GM14941-PA | 1..171 | 51..220 | 452 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12343-PA | 218 | GD12343-PA | 3..218 | 5..220 | 1052 | 93.1 | Plus |
Dsim\GD12344-PA | 172 | GD12344-PA | 1..171 | 51..220 | 451 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11390-PA | 217 | GJ11390-PA | 1..217 | 7..220 | 572 | 52.5 | Plus |
Dvir\GJ11391-PA | 172 | GJ11391-PA | 1..171 | 51..220 | 425 | 51.5 | Plus |