BDGP Sequence Production Resources |
Search the DGRC for RE30473
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 304 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13827-RA |
Protein status: | RE30473.pep: gold |
Preliminary Size: | 630 |
Sequenced Size: | 1001 |
Gene | Date | Evidence |
---|---|---|
CG13827 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13827 | 2002-04-21 | Blastp of sequenced clone |
CG13827 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13827 | 2008-04-29 | Release 5.5 accounting |
CG13827 | 2008-08-15 | Release 5.9 accounting |
CG13827 | 2008-12-18 | 5.12 accounting |
1001 bp (1001 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113446
> RE30473.complete GTTGGATTCCCGAGCGCTCTTGACAATTTCTTGTATTTTCGCTGCGGTAT CTCAGTTCGAGTTTTTACGTGATATAAAACAGTACCTGGTCTTCAAAAAA CGAGCCATTATGGGCACCACGACAAAGTTTGTGAACGAGTTCTGTGATAT TATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTGTGCTACA GTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGAACTAGCC AAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAGCCACACT GCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAGTATGGCT TGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGTGACGGCC AACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCTGGCTGGC CGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGACAATGTCA ACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAGGACAATG CGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATAATATAAA CGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATGGTGTCCA TCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCTGCCGAAA GGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTGCTATTGG CACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAGAGAAGAC TGAACAAGTAGTCGGTCCGCCGTTGTATTTGCAATCCGTGTACTCGTATT TGTTGAACAGAATTTTAAGCTAGTCGGTAATCGTTTTTGTACGTTGAGTT TTTTGTACGGCACTCGAAAGTGTGTTTAGCCAGTATGTCCTTTAAAGTAG CACAAAATACACGCTGAATAATTGTAAAAAACATGAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19083633..19084014 | 604..985 | 1910 | 100 | Plus |
chr3R | 27901430 | chr3R | 19083087..19083454 | 177..544 | 1840 | 100 | Plus |
chr3R | 27901430 | chr3R | 19081781..19081960 | 1..180 | 900 | 100 | Plus |
chr3R | 27901430 | chr3R | 19083512..19083573 | 542..603 | 310 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23260221..23260603 | 604..986 | 1915 | 100 | Plus |
3R | 32079331 | 3R | 23259675..23260042 | 177..544 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 23258369..23258548 | 1..180 | 900 | 100 | Plus |
3R | 32079331 | 3R | 23260100..23260161 | 542..603 | 310 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23001052..23001434 | 604..986 | 1915 | 100 | Plus |
3R | 31820162 | 3R | 23000506..23000873 | 177..544 | 1840 | 100 | Plus |
3R | 31820162 | 3R | 22999200..22999379 | 1..180 | 900 | 100 | Plus |
3R | 31820162 | 3R | 23000931..23000992 | 542..603 | 310 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19081781..19081958 | 1..178 | 100 | -> | Plus |
chr3R | 19083089..19083453 | 179..543 | 100 | -> | Plus |
chr3R | 19083514..19083573 | 544..603 | 100 | -> | Plus |
chr3R | 19083633..19084014 | 604..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..702 | 110..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..702 | 110..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..702 | 110..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..702 | 110..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..702 | 110..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..985 | 1..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..985 | 1..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 5..989 | 1..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 1..985 | 1..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13827-RA | 5..989 | 1..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23258369..23258546 | 1..178 | 100 | -> | Plus |
3R | 23259677..23260041 | 179..543 | 100 | -> | Plus |
3R | 23260102..23260161 | 544..603 | 100 | -> | Plus |
3R | 23260221..23260602 | 604..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23258369..23258546 | 1..178 | 100 | -> | Plus |
3R | 23259677..23260041 | 179..543 | 100 | -> | Plus |
3R | 23260102..23260161 | 544..603 | 100 | -> | Plus |
3R | 23260221..23260602 | 604..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23258369..23258546 | 1..178 | 100 | -> | Plus |
3R | 23259677..23260041 | 179..543 | 100 | -> | Plus |
3R | 23260102..23260161 | 544..603 | 100 | -> | Plus |
3R | 23260221..23260602 | 604..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19084091..19084268 | 1..178 | 100 | -> | Plus |
arm_3R | 19085399..19085763 | 179..543 | 100 | -> | Plus |
arm_3R | 19085824..19085883 | 544..603 | 100 | -> | Plus |
arm_3R | 19085943..19086324 | 604..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23000508..23000872 | 179..543 | 100 | -> | Plus |
3R | 23000933..23000992 | 544..603 | 100 | -> | Plus |
3R | 23001052..23001433 | 604..985 | 100 | Plus | |
3R | 22999200..22999377 | 1..178 | 100 | -> | Plus |
Translation from 0 to 810
> RE30473.hyp LDSRALLTISCIFAAVSQFEFLRDIKQYLVFKKRAIMGTTTKFVNEFCDI IDSYGGRDKVMKALCYSAKLVAGYHAKRNPELAKRYATASSRISGARATL RLIDDIPMIQYALEYGLGENEPDRVMQVLGVTANIVDLLYYPIEKVCWLA EHKIVDVKNADNWDNVNSIFWVLSVYLNLMRTMRNFSLNQEKLNRTNNIN ELDVKTLTKHRLEMVSIVRISLDFVHAVSTLPKGYLWGGKLSTLQVGAIG TLSAGLGIYQIFAKRRLNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13827-PA | 233 | CG13827-PA | 1..233 | 37..269 | 1202 | 100 | Plus |
CG13827-PB | 234 | CG13827-PB | 24..234 | 59..269 | 1081 | 100 | Plus |
CG33474-PB | 201 | CG33474-PB | 3..201 | 42..269 | 415 | 39 | Plus |
CG33474-PA | 201 | CG33474-PA | 3..201 | 42..269 | 415 | 39 | Plus |
Translation from 109 to 810
> RE30473.pep MGTTTKFVNEFCDIIDSYGGRDKVMKALCYSAKLVAGYHAKRNPELAKRY ATASSRISGARATLRLIDDIPMIQYALEYGLGENEPDRVMQVLGVTANIV DLLYYPIEKVCWLAEHKIVDVKNADNWDNVNSIFWVLSVYLNLMRTMRNF SLNQEKLNRTNNINELDVKTLTKHRLEMVSIVRISLDFVHAVSTLPKGYL WGGKLSTLQVGAIGTLSAGLGIYQIFAKRRLNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16987-PA | 233 | GF16987-PA | 1..233 | 1..233 | 1183 | 94 | Plus |
Dana\GF12123-PA | 217 | GF12123-PA | 1..214 | 1..230 | 768 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11196-PA | 233 | GG11196-PA | 1..233 | 1..233 | 1227 | 98.7 | Plus |
Dere\GG24164-PA | 210 | GG24164-PA | 3..198 | 6..233 | 464 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18517-PA | 236 | GH18517-PA | 1..236 | 1..233 | 1058 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13827-PA | 233 | CG13827-PA | 1..233 | 1..233 | 1202 | 100 | Plus |
CG13827-PB | 234 | CG13827-PB | 24..234 | 23..233 | 1081 | 100 | Plus |
CG33474-PB | 201 | CG33474-PB | 3..201 | 6..233 | 415 | 39 | Plus |
CG33474-PA | 201 | CG33474-PA | 3..201 | 6..233 | 415 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24362-PA | 236 | GI24362-PA | 1..236 | 1..233 | 1095 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24492-PA | 233 | GL24492-PA | 1..233 | 1..233 | 1113 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12553-PA | 233 | GA12553-PA | 1..233 | 1..233 | 1119 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26496-PA | 233 | GM26496-PA | 1..233 | 1..233 | 1230 | 98.7 | Plus |
Dsec\GM21215-PA | 201 | GM21215-PA | 3..201 | 6..233 | 465 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21009-PA | 233 | GD21009-PA | 1..233 | 1..233 | 1223 | 97.9 | Plus |
Dsim\GD25984-PA | 201 | GD25984-PA | 3..201 | 6..233 | 460 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24372-PA | 236 | GJ24372-PA | 1..236 | 1..233 | 1080 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11520-PA | 233 | GK11520-PA | 1..233 | 1..233 | 1118 | 87.1 | Plus |