BDGP Sequence Production Resources |
Search the DGRC for RE30678
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 306 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Aatf-RA |
Protein status: | RE30678.pep: gold |
Preliminary Size: | 1516 |
Sequenced Size: | 1724 |
Gene | Date | Evidence |
---|---|---|
CG11188 | 2001-12-14 | Blastp of sequenced clone |
CG11188 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11188 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11188 | 2008-04-29 | Release 5.5 accounting |
CG11188 | 2008-08-15 | Release 5.9 accounting |
CG11188 | 2008-12-18 | 5.12 accounting |
1724 bp (1724 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071275
> RE30678.complete ATCGATGTTCATCCACCTCTAGCAATCAGTCCATGTGGTAAACTAGGTCT TTCGTTTTGAAATTATAAATGAAACTCTAGCAGTATGCTGCGCAAGTCAA AGAAACAGCCACAGACGGTGGCCGAGAAGGTCAGCAAGCTGCTTGCCCAT CCGAACGAGAGCGACAGCGCAGAGGACTCGGACTTCGATGTGGCCACAGG GCCACGTCTGGTGGACTTCGAGGAGGAGGAGTACGACCTGCCGGATGCCC GGAGCACCGACTTTAGGAAGAGGAACGTCAAGCTGCTCTCGGAGCAGAGT GACCGCTACAAAGGAAAGATCAGCAGTCGCAAGGAGTTGGATGACGATGA GGATAAGGATGATGAACAAGAGGTGTCCTACGAAGAAAGCGATGAGGATG ATGAGAACTTGACAAACTTTAAGCAGAAGTTAAATGCTGGAGGAGCTGAA GACTCCGAGGAGGAAACGGCTGCTGGACATTCCGAATCTGGTGAAGAAAG TGAGGAGATTGAGAGCAATTTGACAGACTTTAAAAAAAAGTTTGAGGCTG GAGATTTTAAGTATGATGATGATGAGGAGGAGGATGATGACTCTGAGGAA GAAGACCATAGCCAGGAAAGTGAAGGAGATGACGACGATTCAGAAGATGA TGAAGCAGAAGACGACGCAATCAAACCCTCGGATGTAATGTCCAAAACCA ACCATCAAGCTGAAATCCAAAAAGGACTTGCCGTCCAAAACCAGCTGCGC ATCTGGGAGCGTCTTCTCGAGCTAAGGATCAACACCCAAAAGTTCACCAG CAAAGCGAATCAGCTTCCTGCACCGGAAACTCTAACGAAACTGGCATCGG AAAGCGATGAGCTTCAGTCGGTGCTTAACGAGGCCCAGGAGCGTTCATCC AAGCTACTGCAGCAACTGCTCTCCCTCCAGTCAGCTCTCCACCAGCAATA CTCCGAGATGAAAAAGTCGGTGAAGCGCAAGCAGCCCACAGAGGATTCGG GTCCGGCGGTCAAAAAGTTTGGTTCTGTGCTGCAGAGCAATTTCCAACAA ATGATTGGGTATCGCAATGAAGTTCTGTTAAAGTGGGACGACCGTACGAA ACTCCTGACCCCCGGAGCGGGTGTCAAACGCAAGTCCTTGCAGGAGGACT ACGACATCATCAAAAAGATCGGCAGCGCCCTGGCGAACCGAGAGGCGCTC GTGGAAAAGTCCCAGACCCCAAAGAACAGCCAGGCGGAGCAGCAGGAAAA CACGCCCGTGCAGCGATTGAAGCACATCTACGACGACAGCGATTTCTACC ACCAGCAGCTGCGGGAGCTCATCGAGTACAAGGCCAGCACCTCGTCCAAC ATGAGCGAGATTACCAAGCAGTTCGTGGAGCTACAGAAGCTGCGCCAGAA GATGAAGAAGAAGGTGGACACCAGGGCCAGCAAGGGGCGAAAGCTGCGAT ACGTGGTGCACAACAAGCTCATCAACTTCATGGCGCCCAATGAGAGTAGC GACTGGACGGATGCCTCCAAGTCCGAGTTGTACAAATCATTGTTTGTCTA GACTGTAATAAACTAATATATGAAGTTTTAAATAGGAATAAAATCTATGA AATGTCATAATTGTTAATTGCCATTTAAAAGAATTATAATAGTAGCACTA TATACCTAAACAAAAAAAATCAAATTAAAAGAAAACCGATTTTAAATTGT TAAAAAATAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6718189..6718440 | 1449..1701 | 98 | Plus | |
chr2L | 6716679..6717240 | 1..562 | 100 | == | Plus |
chr2L | 6717332..6718126 | 654..1448 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1467 | 85..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1467 | 85..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1467 | 85..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1467 | 85..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aatf-RA | 1..1467 | 85..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1701 | 1..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1701 | 1..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 3..1703 | 1..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11188-RA | 1..1701 | 1..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aatf-RA | 3..1703 | 1..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6717627..6719074 | 1..1448 | 100 | -> | Plus |
2L | 6719137..6719389 | 1449..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6717627..6719074 | 1..1448 | 100 | -> | Plus |
2L | 6719137..6719389 | 1449..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6717627..6719074 | 1..1448 | 100 | -> | Plus |
2L | 6719137..6719389 | 1449..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6717627..6719074 | 1..1448 | 100 | -> | Plus |
arm_2L | 6719137..6719389 | 1449..1701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6719137..6719389 | 1449..1701 | 100 | Plus | |
2L | 6717627..6719074 | 1..1448 | 100 | -> | Plus |
Translation from 84 to 1550
> RE30678.pep MLRKSKKQPQTVAEKVSKLLAHPNESDSAEDSDFDVATGPRLVDFEEEEY DLPDARSTDFRKRNVKLLSEQSDRYKGKISSRKELDDDEDKDDEQEVSYE ESDEDDENLTNFKQKLNAGGAEDSEEETAAGHSESGEESEEIESNLTDFK KKFEAGDFKYDDDEEEDDDSEEEDHSQESEGDDDDSEDDEAEDDAIKPSD VMSKTNHQAEIQKGLAVQNQLRIWERLLELRINTQKFTSKANQLPAPETL TKLASESDELQSVLNEAQERSSKLLQQLLSLQSALHQQYSEMKKSVKRKQ PTEDSGPAVKKFGSVLQSNFQQMIGYRNEVLLKWDDRTKLLTPGAGVKRK SLQEDYDIIKKIGSALANREALVEKSQTPKNSQAEQQENTPVQRLKHIYD DSDFYHQQLRELIEYKASTSSNMSEITKQFVELQKLRQKMKKKVDTRASK GRKLRYVVHNKLINFMAPNESSDWTDASKSELYKSLFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14948-PA | 460 | GF14948-PA | 1..460 | 1..488 | 1589 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10429-PA | 495 | GG10429-PA | 1..495 | 1..488 | 1999 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10706-PA | 483 | GH10706-PA | 1..483 | 1..488 | 1432 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aatf-PA | 488 | CG11188-PA | 1..488 | 1..488 | 2472 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 770..944 | 24..210 | 185 | 28.3 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 770..944 | 24..210 | 185 | 28.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 690..846 | 44..194 | 179 | 30.8 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 730..894 | 25..194 | 179 | 27 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 690..846 | 44..194 | 179 | 30.8 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 730..894 | 25..194 | 179 | 27 | Plus |
Fkbp39-PA | 357 | CG6226-PA | 89..245 | 84..258 | 177 | 29.7 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 793..977 | 25..197 | 165 | 26.1 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 793..977 | 25..197 | 165 | 26.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 801..983 | 24..208 | 159 | 25.4 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 801..983 | 24..208 | 159 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11279-PA | 486 | GI11279-PA | 1..486 | 1..488 | 1461 | 64.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25784-PA | 499 | GL25784-PA | 1..499 | 1..488 | 1568 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25444-PA | 497 | GA25444-PA | 1..497 | 1..488 | 1583 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16208-PA | 490 | GM16208-PA | 1..490 | 1..488 | 1918 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23427-PA | 492 | GD23427-PA | 1..492 | 1..488 | 1947 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12452-PA | 475 | GJ12452-PA | 1..475 | 1..488 | 1360 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24803-PA | 469 | GK24803-PA | 170..469 | 194..488 | 1155 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14077-PA | 499 | GE14077-PA | 1..499 | 1..488 | 1976 | 89.6 | Plus |
Translation from 84 to 1550
> RE30678.hyp MLRKSKKQPQTVAEKVSKLLAHPNESDSAEDSDFDVATGPRLVDFEEEEY DLPDARSTDFRKRNVKLLSEQSDRYKGKISSRKELDDDEDKDDEQEVSYE ESDEDDENLTNFKQKLNAGGAEDSEEETAAGHSESGEESEEIESNLTDFK KKFEAGDFKYDDDEEEDDDSEEEDHSQESEGDDDDSEDDEAEDDAIKPSD VMSKTNHQAEIQKGLAVQNQLRIWERLLELRINTQKFTSKANQLPAPETL TKLASESDELQSVLNEAQERSSKLLQQLLSLQSALHQQYSEMKKSVKRKQ PTEDSGPAVKKFGSVLQSNFQQMIGYRNEVLLKWDDRTKLLTPGAGVKRK SLQEDYDIIKKIGSALANREALVEKSQTPKNSQAEQQENTPVQRLKHIYD DSDFYHQQLRELIEYKASTSSNMSEITKQFVELQKLRQKMKKKVDTRASK GRKLRYVVHNKLINFMAPNESSDWTDASKSELYKSLFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aatf-PA | 488 | CG11188-PA | 1..488 | 1..488 | 2472 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 770..944 | 24..210 | 185 | 28.3 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 770..944 | 24..210 | 185 | 28.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 690..846 | 44..194 | 179 | 30.8 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 730..894 | 25..194 | 179 | 27 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 690..846 | 44..194 | 179 | 30.8 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 730..894 | 25..194 | 179 | 27 | Plus |
FK506-bp1-PA | 357 | CG6226-PA | 89..245 | 84..258 | 177 | 29.7 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 793..977 | 25..197 | 165 | 26.1 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 793..977 | 25..197 | 165 | 26.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 801..983 | 24..208 | 159 | 25.4 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 801..983 | 24..208 | 159 | 25.4 | Plus |