Clone RE30678 Report

Search the DGRC for RE30678

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:306
Well:78
Vector:pFlc-1
Associated Gene/TranscriptAatf-RA
Protein status:RE30678.pep: gold
Preliminary Size:1516
Sequenced Size:1724

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11188 2001-12-14 Blastp of sequenced clone
CG11188 2002-01-01 Sim4 clustering to Release 2
CG11188 2003-01-01 Sim4 clustering to Release 3
CG11188 2008-04-29 Release 5.5 accounting
CG11188 2008-08-15 Release 5.9 accounting
CG11188 2008-12-18 5.12 accounting

Clone Sequence Records

RE30678.complete Sequence

1724 bp (1724 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071275

> RE30678.complete
ATCGATGTTCATCCACCTCTAGCAATCAGTCCATGTGGTAAACTAGGTCT
TTCGTTTTGAAATTATAAATGAAACTCTAGCAGTATGCTGCGCAAGTCAA
AGAAACAGCCACAGACGGTGGCCGAGAAGGTCAGCAAGCTGCTTGCCCAT
CCGAACGAGAGCGACAGCGCAGAGGACTCGGACTTCGATGTGGCCACAGG
GCCACGTCTGGTGGACTTCGAGGAGGAGGAGTACGACCTGCCGGATGCCC
GGAGCACCGACTTTAGGAAGAGGAACGTCAAGCTGCTCTCGGAGCAGAGT
GACCGCTACAAAGGAAAGATCAGCAGTCGCAAGGAGTTGGATGACGATGA
GGATAAGGATGATGAACAAGAGGTGTCCTACGAAGAAAGCGATGAGGATG
ATGAGAACTTGACAAACTTTAAGCAGAAGTTAAATGCTGGAGGAGCTGAA
GACTCCGAGGAGGAAACGGCTGCTGGACATTCCGAATCTGGTGAAGAAAG
TGAGGAGATTGAGAGCAATTTGACAGACTTTAAAAAAAAGTTTGAGGCTG
GAGATTTTAAGTATGATGATGATGAGGAGGAGGATGATGACTCTGAGGAA
GAAGACCATAGCCAGGAAAGTGAAGGAGATGACGACGATTCAGAAGATGA
TGAAGCAGAAGACGACGCAATCAAACCCTCGGATGTAATGTCCAAAACCA
ACCATCAAGCTGAAATCCAAAAAGGACTTGCCGTCCAAAACCAGCTGCGC
ATCTGGGAGCGTCTTCTCGAGCTAAGGATCAACACCCAAAAGTTCACCAG
CAAAGCGAATCAGCTTCCTGCACCGGAAACTCTAACGAAACTGGCATCGG
AAAGCGATGAGCTTCAGTCGGTGCTTAACGAGGCCCAGGAGCGTTCATCC
AAGCTACTGCAGCAACTGCTCTCCCTCCAGTCAGCTCTCCACCAGCAATA
CTCCGAGATGAAAAAGTCGGTGAAGCGCAAGCAGCCCACAGAGGATTCGG
GTCCGGCGGTCAAAAAGTTTGGTTCTGTGCTGCAGAGCAATTTCCAACAA
ATGATTGGGTATCGCAATGAAGTTCTGTTAAAGTGGGACGACCGTACGAA
ACTCCTGACCCCCGGAGCGGGTGTCAAACGCAAGTCCTTGCAGGAGGACT
ACGACATCATCAAAAAGATCGGCAGCGCCCTGGCGAACCGAGAGGCGCTC
GTGGAAAAGTCCCAGACCCCAAAGAACAGCCAGGCGGAGCAGCAGGAAAA
CACGCCCGTGCAGCGATTGAAGCACATCTACGACGACAGCGATTTCTACC
ACCAGCAGCTGCGGGAGCTCATCGAGTACAAGGCCAGCACCTCGTCCAAC
ATGAGCGAGATTACCAAGCAGTTCGTGGAGCTACAGAAGCTGCGCCAGAA
GATGAAGAAGAAGGTGGACACCAGGGCCAGCAAGGGGCGAAAGCTGCGAT
ACGTGGTGCACAACAAGCTCATCAACTTCATGGCGCCCAATGAGAGTAGC
GACTGGACGGATGCCTCCAAGTCCGAGTTGTACAAATCATTGTTTGTCTA
GACTGTAATAAACTAATATATGAAGTTTTAAATAGGAATAAAATCTATGA
AATGTCATAATTGTTAATTGCCATTTAAAAGAATTATAATAGTAGCACTA
TATACCTAAACAAAAAAAATCAAATTAAAAGAAAACCGATTTTAAATTGT
TAAAAAATAAAAAAAAAAAAAAAA

RE30678.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11188-RA 1715 CG11188-RA 6..1706 1..1701 8505 100 Plus
CG11188.a 2040 CG11188.a 6..1706 1..1701 8505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6716679..6718133 1..1455 7245 99.9 Plus
chr2L 23010047 chr2L 6718188..6718440 1448..1701 1190 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6717627..6719081 1..1455 7260 99.9 Plus
2L 23513712 2L 6719136..6719389 1448..1701 1270 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6717627..6719081 1..1455 7260 99.9 Plus
2L 23513712 2L 6719136..6719389 1448..1701 1270 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:44:31 has no hits.

RE30678.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:45:23 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6718189..6718440 1449..1701 98   Plus
chr2L 6716679..6717240 1..562 100 == Plus
chr2L 6717332..6718126 654..1448 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:08:43 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1467 85..1551 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:12 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1467 85..1551 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:56:44 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1467 85..1551 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:28 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1467 85..1551 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:03 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
Aatf-RA 1..1467 85..1551 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:02 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1701 1..1701 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:11 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1701 1..1701 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:56:44 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 3..1703 1..1701 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:28 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11188-RA 1..1701 1..1701 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:03 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
Aatf-RA 3..1703 1..1701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:23 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6717627..6719074 1..1448 100 -> Plus
2L 6719137..6719389 1449..1701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:23 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6717627..6719074 1..1448 100 -> Plus
2L 6719137..6719389 1449..1701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:23 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6717627..6719074 1..1448 100 -> Plus
2L 6719137..6719389 1449..1701 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:56:44 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6717627..6719074 1..1448 100 -> Plus
arm_2L 6719137..6719389 1449..1701 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:22 Download gff for RE30678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6719137..6719389 1449..1701 100   Plus
2L 6717627..6719074 1..1448 100 -> Plus

RE30678.pep Sequence

Translation from 84 to 1550

> RE30678.pep
MLRKSKKQPQTVAEKVSKLLAHPNESDSAEDSDFDVATGPRLVDFEEEEY
DLPDARSTDFRKRNVKLLSEQSDRYKGKISSRKELDDDEDKDDEQEVSYE
ESDEDDENLTNFKQKLNAGGAEDSEEETAAGHSESGEESEEIESNLTDFK
KKFEAGDFKYDDDEEEDDDSEEEDHSQESEGDDDDSEDDEAEDDAIKPSD
VMSKTNHQAEIQKGLAVQNQLRIWERLLELRINTQKFTSKANQLPAPETL
TKLASESDELQSVLNEAQERSSKLLQQLLSLQSALHQQYSEMKKSVKRKQ
PTEDSGPAVKKFGSVLQSNFQQMIGYRNEVLLKWDDRTKLLTPGAGVKRK
SLQEDYDIIKKIGSALANREALVEKSQTPKNSQAEQQENTPVQRLKHIYD
DSDFYHQQLRELIEYKASTSSNMSEITKQFVELQKLRQKMKKKVDTRASK
GRKLRYVVHNKLINFMAPNESSDWTDASKSELYKSLFV*

RE30678.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14948-PA 460 GF14948-PA 1..460 1..488 1589 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10429-PA 495 GG10429-PA 1..495 1..488 1999 89.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10706-PA 483 GH10706-PA 1..483 1..488 1432 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Aatf-PA 488 CG11188-PA 1..488 1..488 2472 100 Plus
l(2)01289-PG 1191 CG9432-PG 770..944 24..210 185 28.3 Plus
l(2)01289-PM 1193 CG9432-PM 770..944 24..210 185 28.3 Plus
l(2)01289-PG 1191 CG9432-PG 690..846 44..194 179 30.8 Plus
l(2)01289-PG 1191 CG9432-PG 730..894 25..194 179 27 Plus
l(2)01289-PM 1193 CG9432-PM 690..846 44..194 179 30.8 Plus
l(2)01289-PM 1193 CG9432-PM 730..894 25..194 179 27 Plus
Fkbp39-PA 357 CG6226-PA 89..245 84..258 177 29.7 Plus
l(2)01289-PG 1191 CG9432-PG 793..977 25..197 165 26.1 Plus
l(2)01289-PM 1193 CG9432-PM 793..977 25..197 165 26.1 Plus
l(2)01289-PG 1191 CG9432-PG 801..983 24..208 159 25.4 Plus
l(2)01289-PM 1193 CG9432-PM 801..983 24..208 159 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11279-PA 486 GI11279-PA 1..486 1..488 1461 64.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25784-PA 499 GL25784-PA 1..499 1..488 1568 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25444-PA 497 GA25444-PA 1..497 1..488 1583 71.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16208-PA 490 GM16208-PA 1..490 1..488 1918 89 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23427-PA 492 GD23427-PA 1..492 1..488 1947 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12452-PA 475 GJ12452-PA 1..475 1..488 1360 61.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24803-PA 469 GK24803-PA 170..469 194..488 1155 76.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14077-PA 499 GE14077-PA 1..499 1..488 1976 89.6 Plus

RE30678.hyp Sequence

Translation from 84 to 1550

> RE30678.hyp
MLRKSKKQPQTVAEKVSKLLAHPNESDSAEDSDFDVATGPRLVDFEEEEY
DLPDARSTDFRKRNVKLLSEQSDRYKGKISSRKELDDDEDKDDEQEVSYE
ESDEDDENLTNFKQKLNAGGAEDSEEETAAGHSESGEESEEIESNLTDFK
KKFEAGDFKYDDDEEEDDDSEEEDHSQESEGDDDDSEDDEAEDDAIKPSD
VMSKTNHQAEIQKGLAVQNQLRIWERLLELRINTQKFTSKANQLPAPETL
TKLASESDELQSVLNEAQERSSKLLQQLLSLQSALHQQYSEMKKSVKRKQ
PTEDSGPAVKKFGSVLQSNFQQMIGYRNEVLLKWDDRTKLLTPGAGVKRK
SLQEDYDIIKKIGSALANREALVEKSQTPKNSQAEQQENTPVQRLKHIYD
DSDFYHQQLRELIEYKASTSSNMSEITKQFVELQKLRQKMKKKVDTRASK
GRKLRYVVHNKLINFMAPNESSDWTDASKSELYKSLFV*

RE30678.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Aatf-PA 488 CG11188-PA 1..488 1..488 2472 100 Plus
l(2)01289-PG 1191 CG9432-PG 770..944 24..210 185 28.3 Plus
l(2)01289-PM 1193 CG9432-PM 770..944 24..210 185 28.3 Plus
l(2)01289-PG 1191 CG9432-PG 690..846 44..194 179 30.8 Plus
l(2)01289-PG 1191 CG9432-PG 730..894 25..194 179 27 Plus
l(2)01289-PM 1193 CG9432-PM 690..846 44..194 179 30.8 Plus
l(2)01289-PM 1193 CG9432-PM 730..894 25..194 179 27 Plus
FK506-bp1-PA 357 CG6226-PA 89..245 84..258 177 29.7 Plus
l(2)01289-PG 1191 CG9432-PG 793..977 25..197 165 26.1 Plus
l(2)01289-PM 1193 CG9432-PM 793..977 25..197 165 26.1 Plus
l(2)01289-PG 1191 CG9432-PG 801..983 24..208 159 25.4 Plus
l(2)01289-PM 1193 CG9432-PM 801..983 24..208 159 25.4 Plus