BDGP Sequence Production Resources |
Search the DGRC for RE30687
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 306 |
Well: | 87 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10904-RA |
Protein status: | RE30687.pep: gold |
Preliminary Size: | 981 |
Sequenced Size: | 962 |
Gene | Date | Evidence |
---|---|---|
CG10904 | 2001-12-14 | Blastp of sequenced clone |
CG10904 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10904 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10904 | 2008-04-29 | Release 5.5 accounting |
CG10904 | 2008-08-15 | Release 5.9 accounting |
CG10904 | 2008-12-18 | 5.12 accounting |
962 bp (962 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071276
> RE30687.complete ATCCCAAATGTGCACTGCAATAAGATTCGATGCATATTGACATATTGTTG TTAGTTTGCTGAGATGCCAAATAAATCCGAGGAGCTGGGCGAAACGCAAC TGACCAAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAGATC GCCAAGCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCACTA TTCCGAGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAATCCA TCTGCGCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTGCAC AACCTGCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAGGCT CGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGGAGC ACTTCAAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCAGGC TATCAACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACATGTG CTACCCGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAAGTC TGGAATCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCGAAG GTCAGCGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTCCAA ATTCGTTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTCCCT TCCACTTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAACTA ATCGCCAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAGGCT GAAGCGGAAAATAATGCAAGTTATGCTGGAAGTCGGCGAAGAAGATGATC TTACAAACAGTTGATTGTAGAATTATGAACATGTTTAATACAGCGGACAC CGTTTTAGGTATAAATCTTTAATATATGCAGCACACAGATCATGCCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10904-RA | 1246 | CG10904-RA | 172..1116 | 1..945 | 4725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19855142..19855613 | 475..946 | 99 | <- | Minus |
chr2R | 19855677..19856150 | 1..474 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..801 | 64..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..801 | 64..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..801 | 64..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..801 | 64..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..801 | 64..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..945 | 1..946 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..945 | 1..946 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 5..949 | 1..946 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 1..945 | 1..946 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10904-RA | 5..949 | 1..946 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23969061..23969532 | 475..946 | 99 | <- | Minus |
2R | 23969596..23970069 | 1..474 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23969061..23969532 | 475..946 | 99 | <- | Minus |
2R | 23969596..23970069 | 1..474 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23969061..23969532 | 475..946 | 99 | <- | Minus |
2R | 23969596..23970069 | 1..474 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19856584..19857055 | 475..946 | 99 | <- | Minus |
arm_2R | 19857119..19857592 | 1..474 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23970278..23970749 | 475..946 | 99 | <- | Minus |
2R | 23970813..23971286 | 1..474 | 100 | Minus |
Translation from 63 to 863
> RE30687.hyp MPNKSEELGETQLTKRQRRKQTIWTREKIAKLIELYRSSDCLWNHYSELY KNKDCRAKAIESICASLEITKHDYGKKVHNLRNQFNAELKKLERRLEESG GDRDSEKACRWEHFKTLMFLRSVIEPRPGYQQGAPGKKLVSKLDMCYPDQ DVEKQSQSSIESLESMIIENDAEICQPPKVSEPIPPMPPEPAPSSKFVDP NRTVEAPAAPSPFHLPLSGRDQWDAFGELIASEFRNLNSEVSRKRLKRKI MQVMLEVGEEDDLTNS*
Translation from 63 to 863
> RE30687.pep MPNKSEELGETQLTKRQRRKQTIWTREKIAKLIELYRSSDCLWNHYSELY KNKDCRAKAIESICASLEITKHDYGKKVHNLRNQFNAELKKLERRLEESG GDRDSEKACRWEHFKTLMFLRSVIEPRPGYQQGAPGKKLVSKLDMCYPDQ DVEKQSQSSIESLESMIIENDAEICQPPKVSEPIPPMPPEPAPSSKFVDP NRTVEAPAAPSPFHLPLSGRDQWDAFGELIASEFRNLNSEVSRKRLKRKI MQVMLEVGEEDDLTNS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12047-PA | 263 | GF12047-PA | 1..256 | 1..263 | 792 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19972-PA | 265 | GG19972-PA | 1..265 | 1..266 | 1259 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20177-PA | 266 | GH20177-PA | 6..259 | 10..262 | 683 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10904-PB | 266 | CG10904-PB | 1..266 | 1..266 | 1400 | 100 | Plus |
CG10904-PA | 266 | CG10904-PA | 1..266 | 1..266 | 1400 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20688-PA | 265 | GI20688-PA | 13..258 | 16..262 | 707 | 58.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10439-PA | 290 | GL10439-PA | 6..286 | 6..266 | 764 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10629-PA | 290 | GA10629-PA | 6..286 | 6..266 | 757 | 57.6 | Plus |
Dpse\GA25556-PA | 115 | GA25556-PA | 1..98 | 23..122 | 155 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15485-PA | 265 | GM15485-PA | 1..265 | 1..266 | 1345 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24988-PA | 265 | GD24988-PA | 1..265 | 1..266 | 1368 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19741-PA | 270 | GJ19741-PA | 1..268 | 1..262 | 625 | 51.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15847-PA | 277 | GK15847-PA | 3..269 | 7..262 | 751 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11504-PA | 265 | GE11504-PA | 1..265 | 1..266 | 1153 | 90.2 | Plus |