BDGP Sequence Production Resources |
Search the DGRC for RE30690
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 306 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL24-RA |
Protein status: | RE30690.pep: gold |
Sequenced Size: | 815 |
Gene | Date | Evidence |
---|---|---|
CG9282 | 2001-12-14 | Blastp of sequenced clone |
CG9282 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9282 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL24 | 2008-04-29 | Release 5.5 accounting |
RpL24 | 2008-08-15 | Release 5.9 accounting |
RpL24 | 2008-12-18 | 5.12 accounting |
815 bp (815 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071277
> RE30690.complete ACTTACGTTTTCTTTTCTTTTCGTGTTTCTACGCCAGCAAGATGAAAATT GGCTTGTGCGCATTCAGCGGGTACAAAATCTACCCCGGTCATGGCAAGAC CATGGTCAAGATCGATGGCAAGTCGTTCACCTTCCTGGACAAGAAGTGCG AGCGCTCCTACCTGATGAAGCGCAATCCCCGCAAGGTTACGTGGACCGTG CTGTACCGCCGGAAGCACCGCAAGGGAATCGAGGAGGAGGCCTCCAAGAA GCGCACCCGCCGCACCCAGAAGTTCCAGCGCGCCATCGTCGGTGCCTCGC TGGCCGAGATTCTGGCCAAGCGTAACATGAAGCCCGAGGTGCGCAAGGCG CAGCGCGACCAGGCCATCAAGGTGGCCAAGGAGCAGAAGCGTGCCGTCAA GGCCGCCAAGAAGGCTGCTGCCCCCGCTCCCGCTAAGAAGTCGGCGCCCA AGCAGAAGGCCGCCAAGGTCACGCAGAAGGCTGCTCCCCGCGTCGGAGGC AAGCGGTAAACACCTTTCGCCGGTAGTGATGTGCTAAAGTTAGTCCAGGA TTTAAGGAACCACTCGTGAATTGAAAATTAAACAAACGCCGCGAATGCGA ATTCGTGGTGACCAAAAAAAAAACTGTCGCGTGTTCTTTCTATCAAGCTT GGCTTACAGTGTGGAAGCTACACAAGAAAGGAATATCATATTGTGTACGT CATGAATCATCAACTTAACTTTAACCATCAGTTTTGACCAGATGACAGAG TTTTAAATTGTCATGTTTATTAAAAGGCAAATATATACCTTCGAACCATA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 13392796..13393474 | 799..121 | 3395 | 100 | Minus |
chr2L | 23010047 | chr2L | 13393538..13393613 | 122..47 | 380 | 100 | Minus |
chr2L | 23010047 | chr2L | 13393729..13393774 | 46..1 | 215 | 97.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13394122..13394801 | 800..121 | 3400 | 100 | Minus |
2L | 23513712 | 2L | 13394865..13394940 | 122..47 | 380 | 100 | Minus |
2L | 23513712 | 2L | 13395056..13395101 | 46..1 | 215 | 97.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13394122..13394801 | 800..121 | 3400 | 100 | Minus |
2L | 23513712 | 2L | 13394865..13394940 | 122..47 | 380 | 100 | Minus |
2L | 23513712 | 2L | 13395056..13395101 | 46..1 | 215 | 97.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 13392796..13393472 | 123..799 | 100 | <- | Minus |
chr2L | 13393538..13393613 | 47..122 | 100 | <- | Minus |
chr2L | 13393729..13393774 | 1..46 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 1..468 | 42..509 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 1..468 | 42..509 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 1..468 | 42..509 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 1..468 | 42..509 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 1..468 | 42..509 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 15..813 | 1..799 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 15..813 | 1..799 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 1..790 | 10..799 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RA | 15..813 | 1..799 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL24-RC | 31..829 | 1..799 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13394123..13394799 | 123..799 | 100 | <- | Minus |
2L | 13394865..13394940 | 47..122 | 100 | <- | Minus |
2L | 13395056..13395101 | 1..46 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13394123..13394799 | 123..799 | 100 | <- | Minus |
2L | 13394865..13394940 | 47..122 | 100 | <- | Minus |
2L | 13395056..13395101 | 1..46 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13394123..13394799 | 123..799 | 100 | <- | Minus |
2L | 13394865..13394940 | 47..122 | 100 | <- | Minus |
2L | 13395056..13395101 | 1..46 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 13394123..13394799 | 123..799 | 100 | <- | Minus |
arm_2L | 13394865..13394940 | 47..122 | 100 | <- | Minus |
arm_2L | 13395056..13395101 | 1..46 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13394123..13394799 | 123..799 | 100 | <- | Minus |
2L | 13394865..13394940 | 47..122 | 100 | <- | Minus |
2L | 13395056..13395101 | 1..46 | 97 | Minus |
Translation from 2 to 508
> RE30690.hyp FRFLFFSCFYASKMKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCE RSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASL AEILAKRNMKPEVRKAQRDQAIKVAKEQKRAVKAAKKAAAPAPAKKSAPK QKAAKVTQKAAPRVGGKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL24-PC | 155 | CG9282-PC | 1..155 | 14..168 | 785 | 100 | Plus |
RpL24-PB | 155 | CG9282-PB | 1..155 | 14..168 | 785 | 100 | Plus |
RpL24-PA | 155 | CG9282-PA | 1..155 | 14..168 | 785 | 100 | Plus |
RpL24-like-PA | 191 | CG6764-PA | 1..151 | 14..155 | 172 | 30.5 | Plus |
Translation from 41 to 508
> RE30690.pep MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVT WTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEV RKAQRDQAIKVAKEQKRAVKAAKKAAAPAPAKKSAPKQKAAKVTQKAAPR VGGKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21662-PA | 155 | GF21662-PA | 1..155 | 1..155 | 621 | 95.5 | Plus |
Dana\GF18157-PA | 191 | GF18157-PA | 1..57 | 1..57 | 146 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10203-PA | 154 | GG10203-PA | 1..154 | 2..155 | 778 | 98.7 | Plus |
Dere\GG17222-PA | 191 | GG17222-PA | 1..57 | 1..57 | 146 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11098-PA | 155 | GH11098-PA | 1..155 | 1..155 | 777 | 97.4 | Plus |
Dgri\GH23979-PA | 191 | GH23979-PA | 1..57 | 1..57 | 143 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL24-PC | 155 | CG9282-PC | 1..155 | 1..155 | 785 | 100 | Plus |
RpL24-PB | 155 | CG9282-PB | 1..155 | 1..155 | 785 | 100 | Plus |
RpL24-PA | 155 | CG9282-PA | 1..155 | 1..155 | 785 | 100 | Plus |
RpL24-like-PA | 191 | CG6764-PA | 1..151 | 1..142 | 172 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18222-PA | 155 | GI18222-PA | 1..155 | 1..155 | 772 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25708-PA | 155 | GL25708-PA | 1..155 | 1..155 | 645 | 92.9 | Plus |
Dper\GL12604-PA | 192 | GL12604-PA | 1..57 | 1..57 | 146 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22528-PA | 155 | GA22528-PA | 1..155 | 1..155 | 777 | 97.4 | Plus |
Dpse\GA21667-PA | 155 | GA21667-PA | 1..155 | 1..155 | 777 | 97.4 | Plus |
Dpse\GA19846-PA | 192 | GA19846-PA | 1..57 | 1..57 | 146 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25565-PA | 155 | GM25565-PA | 1..155 | 1..155 | 790 | 100 | Plus |
Dsec\GM26099-PA | 191 | GM26099-PA | 1..57 | 1..57 | 149 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22063-PA | 155 | GD22063-PA | 1..155 | 1..155 | 790 | 100 | Plus |
Dsim\GD20660-PA | 191 | GD20660-PA | 1..57 | 1..57 | 149 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18129-PA | 155 | GJ18129-PA | 1..155 | 1..155 | 778 | 97.4 | Plus |