Clone RE30936 Report

Search the DGRC for RE30936

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:309
Well:36
Vector:pFlc-1
Associated Gene/TranscriptCG42457-RA
Protein status:RE30936.pep: wuzgold
Preliminary Size:1518
Sequenced Size:6077

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18434 2002-01-01 Sim4 clustering to Release 2
CG31243 2003-01-01 Sim4 clustering to Release 3
cpo 2008-04-29 Release 5.5 accounting
cpo 2008-08-15 Release 5.9 accounting
cpo 2008-12-18 5.12 accounting
CG42457 2008-12-18 5.12 accounting

Clone Sequence Records

RE30936.complete Sequence

6077 bp (6077 high quality bases) assembled on 2002-07-03

GenBank Submission: AY129455

> RE30936.complete
AGTTTTCAGTCTAATGTCAGGAACGCAGTTAGCTGCTCGTCTCGTGCGGA
ACTCTCAAAACTGGCCGTTTAATATAACTAATAATCTAGCCGAATAATAA
ACAAACTAAGCATCAAAGTGAGGATATATCCCGAGAAAAAAAAACCGAAA
CAAAGAAAAACAACCCAAAAAGAAAATTGTGATACAAATTATTTGATTTG
CGAAACCCAACTGAACAGGCGAAAAAACCCATAGATCCGTACATAAAACT
ACCAATATCGATATATACATATATAAATATATGTGAAAATCCCCAGAGTA
TATATATCAAACGCGAATAAAATAATTCAAAGTGGGCGGTGCAAAACAAT
TTGAAATGCTCTACAGCAACGACGGCTACAAAAATTTCAATTACAGTGCA
GCTGAAAAGTAAAACTTCAGCAATCCAACAACCAACAGCCACACCAACGG
AACGGCACAAAAACCAGTTAAATGTGACTGGCAACAGCAGCAGTAATAAT
AACTACAAAAAGTTCAACTGACTCGTCAAAATAGCCAACTACCAGGACCT
GTTGGGCAGCCATCATCAACTGCTCATAGCCGCCACCGCCGCCGCAGCCG
CTGCAGCAGCCGCCGAACCGCAACTGCAACTGCAACACCTGTTGCCAGCA
GCGCCGACGACACCAGCAGTTATTAGCAATCCTATCAATTCGATTGGCCC
GATCAATCAGATCAGCAGCAGCAGCCATCCGAGCAACAACAACCAGCAGG
CGGTGTTCGAAAAAGCCATCACCATTTCGTCGATTGCGATAAAACGCAGG
CCGACGCTGCCGCAGACGCCAGCAAGTGCCCCACAGGTGTTGTCGCCGTC
GCCCAAGCGCCAGTGTGCCGCCGCCGTCTCCGTGCTGCCGGTGACCGTTC
CCGTGCCCGTTCCGGTGTCCGTACCGCTGCCCGTTTCCGTGCCCGTGCCC
GTCTCGGTCAAAGGTCACCCGATCTCGCACACACACCAGATCGCCCACAC
ACACCAGATCTCGCACTCGCATCCGATCTCGCATCCGCACCACCACCAGC
TGAGCTTCGCCCATCCCACGCAGTTCGCGGCCGCCGTTGCCGCCCACCAC
CAGCAGCAGCAGCAACAGCAGGCGCAGCAGCAGCAACAGGCCGTGCAACA
GCAACAGCAGCAGGCCGTGCAGCAGCAACAAGTTGCCTACGCAGTTGCCG
CCTCACCACAGTTGCAGCAACAGCAGCAGCAGCAGCAACACCGACTGGCC
CAGTTCAACCAGGCGGCAGCAGCAGCTCTCCTGAATCAGCACTTGCAGCA
GCAACACCAGGCGCAGCAGCAGCAACACCAAGCCCAGCAGCAATCTCTGG
CCCACTACGGCGGCTATCAGCTGCACAGATACGCACCGCAACAGCAGCAG
CAGCACATCCTTCTGAGCAGCGGCAGCAGCAGCAGCAAGCACAACAGCAA
CAACAACAGCAACACCAGTGCAGGAGCAGCATCTGCGGCTGTGCCCATAG
CAACATCCGTTGCTGCTGTCCCGACCACCGGCGGCAGCTTGCCGGACAGT
CCCGCCCACGAATCGCACTCGCACGAGTCCAACTCCGCGACCGCCTCCGC
GCCGACCACGCCCTCGCCGGCAGGCAGCGTCACCAGCGCCGCCCCCACAG
CAACAGCAACAGCCGCAGCAGCAGGAAGCGCGGCAGCAACAGCAGCAGCA
ACTGGCACACCAGCAACATCGGCCGTTAGCGACAGCAACAACAACCTGAA
CAGCAGCAGCAGCAGCAACAGCAACAGCAACGCCATAATGGAGAATCAGA
TGGCTCTGGCCCCGTTGGGACTTTCGCAGAGCATGGACTCCGTGAATACG
GCCAGCAATGAGGAAGAGGTTCGCACACTTTTCGTCAGTGGTTTGCCCAT
GGACGCCAAGCCGCGCGAGCTCTATTTGTTATTCAGAGCCTATGAGGGCT
ATGAAGGATCTCTTTTGAAAGTAACTAGCAAAAATGGCAAAACTGCATCG
CCCGTTGGCTTTGTGACATTCCATACAAGAGCTGGAGCTGAGGCAGCTAA
ACAGGATCTGCAGGGTGTACGCTTCGATCCCGATATGCCCCAAACAATTC
GCTTGGAATTCGCCAAGAGTAACACGAAAGTGAGCAAACCCAAACCACAG
CCCAATACAGCGACAACAGCCTCACATCCTGCATTGATGCACCCACTCAC
TGGACATTTGGGCGGTCCCTTCTTTCCGGGCGGACCGGAGTTATGGCATC
ATCCGCTAGCCTATTCGGCAGCCGCCGCCGCCGAATTGCCAGGAGCTGCT
GCACTGCAGCATGCAACGCTAGTGCATCCGGCCCTGCATCCGCAGGTGCC
AGTGCGCTCCTATCTCTGACTAAATACAGACAAAGTAATGGAGCAGCCGA
TGCATCAAACTCAAATGACCATGCCGCCACATCATCAGACAACTGCTATT
CATCCCGGAGCTGCGATGGCTCACATGGCTGCGGCTGCGGCAGCTGCAGC
TGCCGGCGGAGGTGGGGGAGCGGCCACCGCTGCTGCGGCACCGCAAAGTG
CTGCTGCAACAGCCGCTGCAGCTGCTGCTGCATCACATCACCACTATCTG
TCGAGTCCGGCGTTGGCCAGCCCGGCTGGATCTACGAACAACGCCAGTCA
TCCGGGCAATCCACAGATCGCGGCCAATGCGCCCTGCTCCACGCTGTTTG
TGGCCAATCTGGGGCAATTCGTTTCGGAGCACGAGCTGAAGGAGGTGTTC
TCTAGCCATGGCAACAGCAACTGGCTCAAGCTGCTCCACCAGTAACGGCA
GTGGCAGCAGCAGCAACAGCAACCACAACAGCGCTGCGGTGCAGCAACAT
CCGGTGGCATTCATCGAGTTCAAGGACCCACCGACCGCGTCTCAGGCCAT
GCAGCAGCTGCAGGGTAAATATCTGCTCAGCTCCGATCGCGGTTCCATCC
GCATCGAGTTTGCGCGCAGCAAAATGATCAACGAGGTGACCATAATGAAC
ACCAAGGCACCGCCACCACCACCACCCACTGCTGTTGCTGCTACTGTTGC
ACCACCGCCACCGCCAGCACCCATGTACATCCTGAACGGCGGTGGGGGGG
TCGAGCATTTGCTGGTCCCAGCACCACCGCCGTCGGCACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACTCCAGATGCAGCAACTGCAACAGCAGATGCA
CCTGCAGCAGCAACATCAACAGCAGCAGCAACTCCAATTGACCGTGGCAG
CACCCTGCACTGCAGCAAGCACCACCACCCACAGCAGCACCACTAGCGTT
GTTGTTAACTCACTACAGCACCACCAACTTCATCATCCAAATCAGCACCA
CCAAAATCATCTCTTTAGAGACCAACAGCAGCAGCATCAACAGCAAGCAA
CAATCAAGCAACAATCAGCAACAACAAAGGAGCGGGTATGGAATCACGGC
ATGATTTGCTCGCTAAAAAGCTAGAGCGCGAAATGCAGCAACAGCAGACG
CAAGTGCATCACCAGACGCAGCAGCAACAGCAGCAGCAGCAGCACCACCA
CACAGCAGCGCAGCACTACCACCACAGCCACCAGACAGCGCACCACCAGC
AGCAGCAACAGCAGCACCACCAGCAGCAACAACAGCAACAGCAGCAGCAA
CAGCAACAGCAGGCACAGCAGCAGCACCTGAGCCACCACCACCACCACCA
TCATCACCATCAGCAGCAGTTCTTGATGACGCCGACAGCAACCTGACCTT
ATGCGACAACGACGACGACGACTACGACGCCGCCGCACCACCACCCACAT
CAGCTCCACCAGCCGCACCACCAACAGCAGCAGCAGCTGCAGCCGCACCA
CATCTACTCGTACGTGCTGCCGGCAGTCAGTCACATAGCGGCCTGAGGTG
GCCACATTTGAGTTTGAGAAAATCGAGGCAAAGAAGCTCCGCATGCAACG
GATTCATGCGAGAAATAAGAACCTTTAGTTCTAGGCATACAAAAATAACA
GAAAAAAAATGTTGAAAAATCAAAAAAAAAAAACTAAAAACAAAACAAAA
ATGCAAAAAGAAGTTAATTTATATATATATATGACGGAGAGGAAGCAGCT
GCCGCAGACCCGTGTATAACCCCAGTTTAGTGAAATTTTTCGACAGGCAA
CAAAAGATTTGTAGTGAAAACCAAAAAACGGGATAAACTTGTAGTAAAAT
ATACAATTTACCATAGATCGAAAGCTGAGCGAACTACTTAACTAAGTTAG
TTGCAAATACAGCCGATATGCCCCCTATAAACGAATACACATATATACAT
ACATAAACACCTATATATACATGCATATATATATAGCAAGCTGATCGAGA
ATTTGTTTGTTATTCAATATCCATTTAATGTTCTTTTGTAGCTTGATAAA
TTGATTTTGTTTGAAGTTTTTGTTTGTGAAATGTTTGCGTTCTTTTATTG
TTACTTCTTACCCTACATTCAAAACCCCCCCCCCCCCCCCCCCAAACATA
AACGACTTTTCACACAAGGAATTGAGACATGAAATTCGTATCAATCTCAT
AATTTCTAATTTTTCGATATATCAAACAGCGTAAGGGAATAAATTATGAA
CAAAAAGTGTAGGGAGAAAGAAAAGTATATAATTATAGCTTAACCGAATG
TGCCCTTTAAATAGCTCTCTTTCTAGAATTATAAAAAAGTAATATGAAAC
AGAAAAAAAAAAACAACCAAAAGAAAACAATTTAAATGTATGCATTAATG
TAATAATTGTATAACTAGTAAGGTAAATTTTCAAAATGTTACTCAACAAG
AAAATTCTACAAAACAAACCACAACGAGTAGTCGACGTCATCGTATAAAT
TTAAATTTATATTGAGGAATACTGAAGAAAGCTGGTTTCGAAATTTATTT
GTTACAAACGTAAGCATAACAAAATTTAAATGTGAATTTCAAATTTACCC
GATAAGGACCTATCGACGACATGGGATGAACGTTGCACGTGCGCTGTAGT
GAAGCAAAGACTCGAGAAAAAAACCGATTTTTAAGAAACAAGAAACCAGA
AATGCTGAAACTGCTGGCACAGGACACTCCAAAACTTTCCGCCCAGAACT
CTATGTTTTCTTTCGCCACTTTTGGTTGAGACTTTTCTGCGTTTCCCCTA
CAAAGACTTGAACTTTTACTAGAGGCCCCCAAATCTGCAGGACTTCATTT
ACATAGTGAGAAACTTTATTCCTAACCAACTTTCGAAATGCTAGAACAAT
CAAATCACATTTCTTGCTAAACCAACGATCGATTTAATGGGGTGGGGGAG
GGGAGGTCGCAGAACGAGATCGTATGCGTAGGTATCGAATATCGGATACC
GTGTGAGGGTGGGGAGAGTGCTTAAGAGGTAACAGCAAACAAGGACGAGT
AAATAAAATCAATGGCATATCATCTTACGTAGCAAAGCATAAGTCGAGCA
TGTATGTGTGACTACAAAAAGCGACAAATTCTATTGTAACTAAATGCAAG
AGCAGCAGAACAGCAGAAACCAACTATAATTAATTATTATAAAAACAATG
TAAAGCTTAAAGGCTAACAACTATATATAGTTAAATACGAAAACAAATTG
TAAGCAAGCTTTTTACATCATAATTTTCGAATGGTTTTCGAAAGAGTTCG
TTCAGCCTTGTTTAAACCAATATAAGTATATATATATATACGGATAAAAT
CTTACATTTTTACCAAAGTTGTCCTTACTAATTAAACAAGTTATGTTAAC
CAATTCACACACAATTTGTTAAACAAAAACAGAAGGAACCCACGAGTAAA
TCAACTAATTTTAAACGTTTTTTAAAGCTTGGTTTAGTGTAAACGTGACT
AGACATACCAAAGGCATATTTGAAACAAAAACCACAGTTGTTAGAAGGAA
ATATGAAACAAAAAGAGAAACATTTACTAATTGGTACTGTTTTAGCCCTT
TTTCCATACAAATTTTCTTTAAATATTTAATTACATTATTTCCCCGTCTA
ACTTTAGTCGAATGTAAAATGCATATTCCGTCCAATTACATTTCGTGCTT
TCCTCTTGCCCAAAAAAAAAAAAAAAA

RE30936.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42457-RA 6059 CG42457-RA 1..6059 1..6061 30155 99.8 Plus
CG42457-RB 6130 CG42457-RB 180..6130 107..6061 29570 99.8 Plus
CG31243-RA 5084 CG31243-RA 637..3499 510..3372 14315 100 Plus
CG31243-RA 5084 CG31243-RA 3500..5084 3428..5014 7800 99.6 Plus
CG42457-RB 6130 CG42457-RB 1..107 1..107 535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13837571..13840204 3428..6061 12930 99.6 Plus
chr3R 27901430 chr3R 13790809..13792168 511..1870 6755 99.8 Plus
chr3R 27901430 chr3R 13835528..13836146 2754..3372 3095 100 Plus
chr3R 27901430 chr3R 13771540..13771944 108..512 2025 100 Plus
chr3R 27901430 chr3R 13834661..13835007 2409..2755 1735 100 Plus
chr3R 27901430 chr3R 13834383..13834585 2206..2408 1015 100 Plus
chr3R 27901430 chr3R 13833299..13833444 2060..2205 730 100 Plus
chr3R 27901430 chr3R 13768453..13768559 1..107 535 100 Plus
chr3R 27901430 chr3R 13831366..13831446 1867..1947 405 100 Plus
chr3R 27901430 chr3R 13831694..13831758 2000..2064 325 100 Plus
chr3R 27901430 chr3R 13831509..13831564 1945..2000 280 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18013148..18015794 3428..6076 13075 99.7 Plus
3R 32079331 3R 17966471..17967830 511..1870 6800 100 Plus
3R 32079331 3R 18011095..18011713 2754..3372 3095 100 Plus
3R 32079331 3R 17947194..17947598 108..512 2025 100 Plus
3R 32079331 3R 18010228..18010574 2409..2755 1735 100 Plus
3R 32079331 3R 18009948..18010150 2206..2408 1015 100 Plus
3R 32079331 3R 18008864..18009009 2060..2205 730 100 Plus
3R 32079331 3R 17944107..17944213 1..107 535 100 Plus
3R 32079331 3R 18006933..18007013 1867..1947 405 100 Plus
3R 32079331 3R 18007261..18007325 2000..2064 325 100 Plus
3R 32079331 3R 18007076..18007131 1945..2000 280 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17753979..17756625 3428..6076 13095 99.7 Plus
3R 31820162 3R 17707302..17708661 511..1870 6800 100 Plus
3R 31820162 3R 17751926..17752544 2754..3372 3095 100 Plus
3R 31820162 3R 17688025..17688429 108..512 2025 100 Plus
3R 31820162 3R 17751059..17751405 2409..2755 1735 100 Plus
3R 31820162 3R 17750779..17750981 2206..2408 1015 100 Plus
3R 31820162 3R 17749695..17749840 2060..2205 730 100 Plus
3R 31820162 3R 17684938..17685044 1..107 535 100 Plus
3R 31820162 3R 17747764..17747844 1867..1947 405 100 Plus
3R 31820162 3R 17748092..17748156 2000..2064 325 100 Plus
3R 31820162 3R 17747907..17747962 1945..2000 280 100 Plus
X 23527363 X 5619579..5619683 3600..3704 255 82.8 Plus
2R 25260384 2R 21150825..21150938 3719..3606 195 78 Minus
Blast to na_te.dros performed 2019-03-15 14:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2664 3518..3857 527 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7577 3009..3860 342 53.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2987 2761..3396 318 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2971 2761..3359 312 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2740..2984 3178..3427 282 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2630 426..745 257 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2923 2790..3429 254 54.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2959 3119..3298 252 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2666 374..745 230 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2536 556..751 212 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..7210 2761..3242 202 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6879 586..748 198 62.2 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1124..1244 3308..3426 193 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2468 550..727 192 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..7567 2794..3689 191 53.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2550 475..736 177 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6835..6934 2761..2862 162 67.3 Plus
roo 9092 roo DM_ROO 9092bp 1069..1164 2761..2855 161 67 Plus
roo 9092 roo DM_ROO 9092bp 1093..1163 2761..2832 159 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6836 2761..2832 158 70.3 Plus
roo 9092 roo DM_ROO 9092bp 1079..1151 2762..2832 153 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2762..2853 2761..2851 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..3005 2485..3201 149 52.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3248..3344 2755..2853 148 65.3 Plus
roo 9092 roo DM_ROO 9092bp 1052..1141 2766..2853 147 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6952 422..666 146 56.6 Plus
TAHRE 10463 TAHRE OSV 10463bp 1205..1451 5752..5985 146 57.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3165..3322 503..665 145 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6817..6887 2761..2832 141 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6857 2761..2832 140 67.6 Plus
BS 5142 BS BS 5142bp 2042..2115 433..507 138 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2797..2889 2754..2851 136 64.6 Plus
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 424..499 4871..4796 136 67.5 Minus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 4848..5369 5397..5922 132 52.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3278..3340 468..528 130 71.9 Plus

RE30936.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:10:58 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13831368..13831445 1869..1946 100 -> Plus
chr3R 13831511..13831564 1947..2000 100 -> Plus
chr3R 13831695..13831757 2001..2063 100 -> Plus
chr3R 13833303..13833444 2064..2205 100 -> Plus
chr3R 13836007..13836146 3233..3372 100 == Plus
chr3R 13837571..13837660 3428..3517 100 == Plus
chr3R 13837856..13837896 3713..3753 100 == Plus
chr3R 13837994..13838133 3851..3990 99 == Plus
chr3R 13834383..13834585 2206..2408 100 -> Plus
chr3R 13834661..13834729 2409..2477 100 == Plus
chr3R 13834834..13835007 2582..2755 100 == Plus
chr3R 13835624..13835781 2850..3007 100 == Plus
chr3R 13835846..13835912 3072..3138 100 == Plus
chr3R 13768453..13768559 1..107 100 -> Plus
chr3R 13771540..13771944 108..512 100 -> Plus
chr3R 13790811..13791192 513..894 90 == Plus
chr3R 13791251..13791391 953..1093 100 == Plus
chr3R 13791480..13791560 1182..1262 65 == Plus
chr3R 13791641..13791661 1343..1363 100 == Plus
chr3R 13791818..13791963 1520..1665 100 == Plus
chr3R 13792078..13792166 1780..1868 100 -> Plus
chr3R 13838207..13838428 4063..4284 100 == Plus
chr3R 13838480..13840204 4336..6061 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:50:24 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RB 1..1848 522..2369 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:48:37 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RB 1..1848 522..2369 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:21:35 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RO 1..2247 549..2795 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:42:24 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RF 1..1848 522..2369 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:52:48 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RO 1..2247 549..2795 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:23 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
CG42457-RA 1..6059 1..6061 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:48:37 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RB 1..6059 1..6061 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:21:35 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RN 2..112 1..109 98 <- Plus
cpo-RN 184..6133 110..6061 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:42:25 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RB 1..3427 1..3429 99 -> Plus
cpo-RB 3467..6096 3430..6061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:52:48 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
cpo-RY 2..112 1..109 98 <- Plus
cpo-RY 184..6131 110..6061 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:58 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17944107..17944213 1..107 100 -> Plus
3R 17947194..17947598 108..512 100 -> Plus
3R 18013148..18015779 3428..6061 99   Plus
3R 17966473..17967828 513..1868 100 -> Plus
3R 18006935..18007012 1869..1946 100 -> Plus
3R 18007078..18007131 1947..2000 100 -> Plus
3R 18007262..18007324 2001..2063 100 -> Plus
3R 18008868..18009009 2064..2205 100 -> Plus
3R 18009948..18010150 2206..2408 100 -> Plus
3R 18010228..18010574 2409..2755 100 -> Plus
3R 18011097..18011713 2756..3372 100 -> Plus
3R 18012096..18012150 3373..3427 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:58 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17944107..17944213 1..107 100 -> Plus
3R 17947194..17947598 108..512 100 -> Plus
3R 18013148..18015779 3428..6061 99   Plus
3R 17966473..17967828 513..1868 100 -> Plus
3R 18006935..18007012 1869..1946 100 -> Plus
3R 18007078..18007131 1947..2000 100 -> Plus
3R 18007262..18007324 2001..2063 100 -> Plus
3R 18008868..18009009 2064..2205 100 -> Plus
3R 18009948..18010150 2206..2408 100 -> Plus
3R 18010228..18010574 2409..2755 100 -> Plus
3R 18011097..18011713 2756..3372 100 -> Plus
3R 18012096..18012150 3373..3427 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:58 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17944107..17944213 1..107 100 -> Plus
3R 17947194..17947598 108..512 100 -> Plus
3R 18013148..18015779 3428..6061 99   Plus
3R 17966473..17967828 513..1868 100 -> Plus
3R 18006935..18007012 1869..1946 100 -> Plus
3R 18007078..18007131 1947..2000 100 -> Plus
3R 18007262..18007324 2001..2063 100 -> Plus
3R 18008868..18009009 2064..2205 100 -> Plus
3R 18009948..18010150 2206..2408 100 -> Plus
3R 18010228..18010574 2409..2755 100 -> Plus
3R 18011097..18011713 2756..3372 100 -> Plus
3R 18012096..18012150 3373..3427 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:21:35 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13835670..13835872 2206..2408 100 -> Plus
arm_3R 13835950..13836296 2409..2755 100 -> Plus
arm_3R 13769829..13769935 1..107 100 -> Plus
arm_3R 13772916..13773320 108..512 100 -> Plus
arm_3R 13792195..13793550 513..1868 100 -> Plus
arm_3R 13832657..13832734 1869..1946 100 -> Plus
arm_3R 13832800..13832853 1947..2000 100 -> Plus
arm_3R 13832984..13833046 2001..2063 100 -> Plus
arm_3R 13834590..13834731 2064..2205 100 -> Plus
arm_3R 13836819..13837435 2756..3372 100 -> Plus
arm_3R 13837818..13837872 3373..3427 100 -> Plus
arm_3R 13838870..13841501 3428..6061 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:34:07 Download gff for RE30936.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17688025..17688429 108..512 100 -> Plus
3R 17707304..17708659 513..1868 100 -> Plus
3R 17747766..17747843 1869..1946 100 -> Plus
3R 17747909..17747962 1947..2000 100 -> Plus
3R 17748093..17748155 2001..2063 100 -> Plus
3R 17749699..17749840 2064..2205 100 -> Plus
3R 17750779..17750981 2206..2408 100 -> Plus
3R 17751059..17751405 2409..2755 100 -> Plus
3R 17751928..17752544 2756..3372 100 -> Plus
3R 17752927..17752981 3373..3427 100 -> Plus
3R 17753979..17756610 3428..6061 99   Plus
3R 17684938..17685044 1..107 100 -> Plus

RE30936.hyp Sequence

Translation from 2757 to 3473

> RE30936.hyp
MATATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQ
LQGKYLLSSDRGSIRIEFARSKMINEVTIMNTKAPPPPPPTAVAATVAPP
PPPAPMYILNGGGGVEHLLVPAPPPSAQQQQQQQQQQLQMQQLQQQMHLQ
QQHQQQQQLQLTVAAPCTAASTTTHSSTTSVVVNSLQHHQLHHPNQHHQN
HLFRDQQQQHQQQATIKQQSATTKERVWNHGMICSLKS*

RE30936.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
cpo-PS 962 CG43738-PS 750..955 1..206 1073 99.5 Plus
velo-PC 1833 CG10107-PC 50..153 91..227 164 36.7 Plus
velo-PA 1833 CG10107-PA 50..153 91..227 164 36.7 Plus
ct-PD 2165 CG11387-PD 565..706 95..231 163 33.1 Plus
ct-PC 2383 CG11387-PC 783..924 95..231 163 33.1 Plus

RE30936.pep Sequence

Translation from 2757 to 3473

> RE30936.pep
MATATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQ
LQGKYLLSSDRGSIRIEFARSKMINEVTIMNTKAPPPPPPTAVAATVAPP
PPPAPMYILNGGGGVEHLLVPAPPPSAQQQQQQQQQQLQMQQLQQQMHLQ
QQHQQQQQLQLTVAAPCTAASTTTHSSTTSVVVNSLQHHQLHHPNQHHQN
HLFRDQQQQHQQQATIKQQSATTKERVWNHGMICSLKS*

RE30936.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22582-PA 745 GG22582-PA 434..649 26..224 450 79.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15023-PA 396 GH15023-PA 164..209 31..76 220 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
cpo-PS 962 CG43738-PS 750..955 1..206 1073 99.5 Plus
velo-PC 1833 CG10107-PC 50..153 91..227 164 36.7 Plus
velo-PA 1833 CG10107-PA 50..153 91..227 164 36.7 Plus
ct-PD 2165 CG11387-PD 565..706 95..231 163 33.1 Plus
sbb-PH 2302 CG5580-PH 1788..1974 18..223 159 29.5 Plus
sbb-PD 2302 CG5580-PD 1788..1974 18..223 159 29.5 Plus
sbb-PG 2312 CG5580-PG 1798..1984 18..223 159 29.5 Plus
sbb-PJ 2330 CG5580-PJ 1798..1984 18..223 159 29.5 Plus
CG6700-PB 874 CG6700-PB 85..184 81..218 158 36.2 Plus
CG6700-PA 874 CG6700-PA 85..184 81..218 158 36.2 Plus
Nlg3-PB 1159 CG34127-PB 1004..1149 83..219 157 34 Plus
Nlg3-PC 1159 CG34127-PC 1004..1149 83..219 157 34 Plus
Nlg3-PB 1159 CG34127-PB 994..1150 88..213 156 33.1 Plus
Nlg3-PC 1159 CG34127-PC 994..1150 88..213 156 33.1 Plus
Unr-PC 1032 CG7015-PC 60..128 125..222 156 44.6 Plus
Unr-PA 1039 CG7015-PA 60..128 125..222 156 44.6 Plus
Unr-PE 1057 CG7015-PE 60..128 125..222 156 44.6 Plus
Unr-PD 1057 CG7015-PD 60..128 125..222 156 44.6 Plus
Unr-PB 1057 CG7015-PB 60..128 125..222 156 44.6 Plus
CG43347-PD 2652 CG43347-PD 1501..1603 119..219 156 42.3 Plus
CG43347-PB 2666 CG43347-PB 1515..1617 119..219 156 42.3 Plus
CG43347-PC 2684 CG43347-PC 1533..1635 119..219 156 42.3 Plus
CG13739-PA 875 CG13739-PA 133..272 73..210 155 35.4 Plus
Eip75B-PF 1412 CG8127-PF 268..398 84..216 151 32.9 Plus
Eip75B-PE 1412 CG8127-PE 268..398 84..216 151 32.9 Plus
Eip75B-PB 1412 CG8127-PB 268..398 84..216 151 32.9 Plus
CG17233-PI 772 CG17233-PI 35..273 1..222 150 27.8 Plus
CG17233-PD 772 CG17233-PD 35..273 1..222 150 27.8 Plus
CG17233-PA 1173 CG17233-PA 35..273 1..222 150 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23707-PA 214 GI23707-PA 57..149 29..118 233 55.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15270-PA 349 GM15270-PA 25..202 26..206 471 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19193-PA 342 GD19193-PA 1..195 1..205 479 88.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23265-PA 214 GJ23265-PA 1..182 48..205 246 49.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11234-PA 571 GK11234-PA 357..454 17..118 236 54.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25503-PA 1140 GE25503-PA 822..1041 26..224 437 79.1 Plus