Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE30936.complete Sequence
6077 bp (6077 high quality bases) assembled on 2002-07-03
GenBank Submission: AY129455
> RE30936.complete
AGTTTTCAGTCTAATGTCAGGAACGCAGTTAGCTGCTCGTCTCGTGCGGA
ACTCTCAAAACTGGCCGTTTAATATAACTAATAATCTAGCCGAATAATAA
ACAAACTAAGCATCAAAGTGAGGATATATCCCGAGAAAAAAAAACCGAAA
CAAAGAAAAACAACCCAAAAAGAAAATTGTGATACAAATTATTTGATTTG
CGAAACCCAACTGAACAGGCGAAAAAACCCATAGATCCGTACATAAAACT
ACCAATATCGATATATACATATATAAATATATGTGAAAATCCCCAGAGTA
TATATATCAAACGCGAATAAAATAATTCAAAGTGGGCGGTGCAAAACAAT
TTGAAATGCTCTACAGCAACGACGGCTACAAAAATTTCAATTACAGTGCA
GCTGAAAAGTAAAACTTCAGCAATCCAACAACCAACAGCCACACCAACGG
AACGGCACAAAAACCAGTTAAATGTGACTGGCAACAGCAGCAGTAATAAT
AACTACAAAAAGTTCAACTGACTCGTCAAAATAGCCAACTACCAGGACCT
GTTGGGCAGCCATCATCAACTGCTCATAGCCGCCACCGCCGCCGCAGCCG
CTGCAGCAGCCGCCGAACCGCAACTGCAACTGCAACACCTGTTGCCAGCA
GCGCCGACGACACCAGCAGTTATTAGCAATCCTATCAATTCGATTGGCCC
GATCAATCAGATCAGCAGCAGCAGCCATCCGAGCAACAACAACCAGCAGG
CGGTGTTCGAAAAAGCCATCACCATTTCGTCGATTGCGATAAAACGCAGG
CCGACGCTGCCGCAGACGCCAGCAAGTGCCCCACAGGTGTTGTCGCCGTC
GCCCAAGCGCCAGTGTGCCGCCGCCGTCTCCGTGCTGCCGGTGACCGTTC
CCGTGCCCGTTCCGGTGTCCGTACCGCTGCCCGTTTCCGTGCCCGTGCCC
GTCTCGGTCAAAGGTCACCCGATCTCGCACACACACCAGATCGCCCACAC
ACACCAGATCTCGCACTCGCATCCGATCTCGCATCCGCACCACCACCAGC
TGAGCTTCGCCCATCCCACGCAGTTCGCGGCCGCCGTTGCCGCCCACCAC
CAGCAGCAGCAGCAACAGCAGGCGCAGCAGCAGCAACAGGCCGTGCAACA
GCAACAGCAGCAGGCCGTGCAGCAGCAACAAGTTGCCTACGCAGTTGCCG
CCTCACCACAGTTGCAGCAACAGCAGCAGCAGCAGCAACACCGACTGGCC
CAGTTCAACCAGGCGGCAGCAGCAGCTCTCCTGAATCAGCACTTGCAGCA
GCAACACCAGGCGCAGCAGCAGCAACACCAAGCCCAGCAGCAATCTCTGG
CCCACTACGGCGGCTATCAGCTGCACAGATACGCACCGCAACAGCAGCAG
CAGCACATCCTTCTGAGCAGCGGCAGCAGCAGCAGCAAGCACAACAGCAA
CAACAACAGCAACACCAGTGCAGGAGCAGCATCTGCGGCTGTGCCCATAG
CAACATCCGTTGCTGCTGTCCCGACCACCGGCGGCAGCTTGCCGGACAGT
CCCGCCCACGAATCGCACTCGCACGAGTCCAACTCCGCGACCGCCTCCGC
GCCGACCACGCCCTCGCCGGCAGGCAGCGTCACCAGCGCCGCCCCCACAG
CAACAGCAACAGCCGCAGCAGCAGGAAGCGCGGCAGCAACAGCAGCAGCA
ACTGGCACACCAGCAACATCGGCCGTTAGCGACAGCAACAACAACCTGAA
CAGCAGCAGCAGCAGCAACAGCAACAGCAACGCCATAATGGAGAATCAGA
TGGCTCTGGCCCCGTTGGGACTTTCGCAGAGCATGGACTCCGTGAATACG
GCCAGCAATGAGGAAGAGGTTCGCACACTTTTCGTCAGTGGTTTGCCCAT
GGACGCCAAGCCGCGCGAGCTCTATTTGTTATTCAGAGCCTATGAGGGCT
ATGAAGGATCTCTTTTGAAAGTAACTAGCAAAAATGGCAAAACTGCATCG
CCCGTTGGCTTTGTGACATTCCATACAAGAGCTGGAGCTGAGGCAGCTAA
ACAGGATCTGCAGGGTGTACGCTTCGATCCCGATATGCCCCAAACAATTC
GCTTGGAATTCGCCAAGAGTAACACGAAAGTGAGCAAACCCAAACCACAG
CCCAATACAGCGACAACAGCCTCACATCCTGCATTGATGCACCCACTCAC
TGGACATTTGGGCGGTCCCTTCTTTCCGGGCGGACCGGAGTTATGGCATC
ATCCGCTAGCCTATTCGGCAGCCGCCGCCGCCGAATTGCCAGGAGCTGCT
GCACTGCAGCATGCAACGCTAGTGCATCCGGCCCTGCATCCGCAGGTGCC
AGTGCGCTCCTATCTCTGACTAAATACAGACAAAGTAATGGAGCAGCCGA
TGCATCAAACTCAAATGACCATGCCGCCACATCATCAGACAACTGCTATT
CATCCCGGAGCTGCGATGGCTCACATGGCTGCGGCTGCGGCAGCTGCAGC
TGCCGGCGGAGGTGGGGGAGCGGCCACCGCTGCTGCGGCACCGCAAAGTG
CTGCTGCAACAGCCGCTGCAGCTGCTGCTGCATCACATCACCACTATCTG
TCGAGTCCGGCGTTGGCCAGCCCGGCTGGATCTACGAACAACGCCAGTCA
TCCGGGCAATCCACAGATCGCGGCCAATGCGCCCTGCTCCACGCTGTTTG
TGGCCAATCTGGGGCAATTCGTTTCGGAGCACGAGCTGAAGGAGGTGTTC
TCTAGCCATGGCAACAGCAACTGGCTCAAGCTGCTCCACCAGTAACGGCA
GTGGCAGCAGCAGCAACAGCAACCACAACAGCGCTGCGGTGCAGCAACAT
CCGGTGGCATTCATCGAGTTCAAGGACCCACCGACCGCGTCTCAGGCCAT
GCAGCAGCTGCAGGGTAAATATCTGCTCAGCTCCGATCGCGGTTCCATCC
GCATCGAGTTTGCGCGCAGCAAAATGATCAACGAGGTGACCATAATGAAC
ACCAAGGCACCGCCACCACCACCACCCACTGCTGTTGCTGCTACTGTTGC
ACCACCGCCACCGCCAGCACCCATGTACATCCTGAACGGCGGTGGGGGGG
TCGAGCATTTGCTGGTCCCAGCACCACCGCCGTCGGCACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACTCCAGATGCAGCAACTGCAACAGCAGATGCA
CCTGCAGCAGCAACATCAACAGCAGCAGCAACTCCAATTGACCGTGGCAG
CACCCTGCACTGCAGCAAGCACCACCACCCACAGCAGCACCACTAGCGTT
GTTGTTAACTCACTACAGCACCACCAACTTCATCATCCAAATCAGCACCA
CCAAAATCATCTCTTTAGAGACCAACAGCAGCAGCATCAACAGCAAGCAA
CAATCAAGCAACAATCAGCAACAACAAAGGAGCGGGTATGGAATCACGGC
ATGATTTGCTCGCTAAAAAGCTAGAGCGCGAAATGCAGCAACAGCAGACG
CAAGTGCATCACCAGACGCAGCAGCAACAGCAGCAGCAGCAGCACCACCA
CACAGCAGCGCAGCACTACCACCACAGCCACCAGACAGCGCACCACCAGC
AGCAGCAACAGCAGCACCACCAGCAGCAACAACAGCAACAGCAGCAGCAA
CAGCAACAGCAGGCACAGCAGCAGCACCTGAGCCACCACCACCACCACCA
TCATCACCATCAGCAGCAGTTCTTGATGACGCCGACAGCAACCTGACCTT
ATGCGACAACGACGACGACGACTACGACGCCGCCGCACCACCACCCACAT
CAGCTCCACCAGCCGCACCACCAACAGCAGCAGCAGCTGCAGCCGCACCA
CATCTACTCGTACGTGCTGCCGGCAGTCAGTCACATAGCGGCCTGAGGTG
GCCACATTTGAGTTTGAGAAAATCGAGGCAAAGAAGCTCCGCATGCAACG
GATTCATGCGAGAAATAAGAACCTTTAGTTCTAGGCATACAAAAATAACA
GAAAAAAAATGTTGAAAAATCAAAAAAAAAAAACTAAAAACAAAACAAAA
ATGCAAAAAGAAGTTAATTTATATATATATATGACGGAGAGGAAGCAGCT
GCCGCAGACCCGTGTATAACCCCAGTTTAGTGAAATTTTTCGACAGGCAA
CAAAAGATTTGTAGTGAAAACCAAAAAACGGGATAAACTTGTAGTAAAAT
ATACAATTTACCATAGATCGAAAGCTGAGCGAACTACTTAACTAAGTTAG
TTGCAAATACAGCCGATATGCCCCCTATAAACGAATACACATATATACAT
ACATAAACACCTATATATACATGCATATATATATAGCAAGCTGATCGAGA
ATTTGTTTGTTATTCAATATCCATTTAATGTTCTTTTGTAGCTTGATAAA
TTGATTTTGTTTGAAGTTTTTGTTTGTGAAATGTTTGCGTTCTTTTATTG
TTACTTCTTACCCTACATTCAAAACCCCCCCCCCCCCCCCCCCAAACATA
AACGACTTTTCACACAAGGAATTGAGACATGAAATTCGTATCAATCTCAT
AATTTCTAATTTTTCGATATATCAAACAGCGTAAGGGAATAAATTATGAA
CAAAAAGTGTAGGGAGAAAGAAAAGTATATAATTATAGCTTAACCGAATG
TGCCCTTTAAATAGCTCTCTTTCTAGAATTATAAAAAAGTAATATGAAAC
AGAAAAAAAAAAACAACCAAAAGAAAACAATTTAAATGTATGCATTAATG
TAATAATTGTATAACTAGTAAGGTAAATTTTCAAAATGTTACTCAACAAG
AAAATTCTACAAAACAAACCACAACGAGTAGTCGACGTCATCGTATAAAT
TTAAATTTATATTGAGGAATACTGAAGAAAGCTGGTTTCGAAATTTATTT
GTTACAAACGTAAGCATAACAAAATTTAAATGTGAATTTCAAATTTACCC
GATAAGGACCTATCGACGACATGGGATGAACGTTGCACGTGCGCTGTAGT
GAAGCAAAGACTCGAGAAAAAAACCGATTTTTAAGAAACAAGAAACCAGA
AATGCTGAAACTGCTGGCACAGGACACTCCAAAACTTTCCGCCCAGAACT
CTATGTTTTCTTTCGCCACTTTTGGTTGAGACTTTTCTGCGTTTCCCCTA
CAAAGACTTGAACTTTTACTAGAGGCCCCCAAATCTGCAGGACTTCATTT
ACATAGTGAGAAACTTTATTCCTAACCAACTTTCGAAATGCTAGAACAAT
CAAATCACATTTCTTGCTAAACCAACGATCGATTTAATGGGGTGGGGGAG
GGGAGGTCGCAGAACGAGATCGTATGCGTAGGTATCGAATATCGGATACC
GTGTGAGGGTGGGGAGAGTGCTTAAGAGGTAACAGCAAACAAGGACGAGT
AAATAAAATCAATGGCATATCATCTTACGTAGCAAAGCATAAGTCGAGCA
TGTATGTGTGACTACAAAAAGCGACAAATTCTATTGTAACTAAATGCAAG
AGCAGCAGAACAGCAGAAACCAACTATAATTAATTATTATAAAAACAATG
TAAAGCTTAAAGGCTAACAACTATATATAGTTAAATACGAAAACAAATTG
TAAGCAAGCTTTTTACATCATAATTTTCGAATGGTTTTCGAAAGAGTTCG
TTCAGCCTTGTTTAAACCAATATAAGTATATATATATATACGGATAAAAT
CTTACATTTTTACCAAAGTTGTCCTTACTAATTAAACAAGTTATGTTAAC
CAATTCACACACAATTTGTTAAACAAAAACAGAAGGAACCCACGAGTAAA
TCAACTAATTTTAAACGTTTTTTAAAGCTTGGTTTAGTGTAAACGTGACT
AGACATACCAAAGGCATATTTGAAACAAAAACCACAGTTGTTAGAAGGAA
ATATGAAACAAAAAGAGAAACATTTACTAATTGGTACTGTTTTAGCCCTT
TTTCCATACAAATTTTCTTTAAATATTTAATTACATTATTTCCCCGTCTA
ACTTTAGTCGAATGTAAAATGCATATTCCGTCCAATTACATTTCGTGCTT
TCCTCTTGCCCAAAAAAAAAAAAAAAA
RE30936.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42457-RA | 6059 | CG42457-RA | 1..6059 | 1..6061 | 30155 | 99.8 | Plus |
CG42457-RB | 6130 | CG42457-RB | 180..6130 | 107..6061 | 29570 | 99.8 | Plus |
CG31243-RA | 5084 | CG31243-RA | 637..3499 | 510..3372 | 14315 | 100 | Plus |
CG31243-RA | 5084 | CG31243-RA | 3500..5084 | 3428..5014 | 7800 | 99.6 | Plus |
CG42457-RB | 6130 | CG42457-RB | 1..107 | 1..107 | 535 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 13837571..13840204 | 3428..6061 | 12930 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 13790809..13792168 | 511..1870 | 6755 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 13835528..13836146 | 2754..3372 | 3095 | 100 | Plus |
chr3R | 27901430 | chr3R | 13771540..13771944 | 108..512 | 2025 | 100 | Plus |
chr3R | 27901430 | chr3R | 13834661..13835007 | 2409..2755 | 1735 | 100 | Plus |
chr3R | 27901430 | chr3R | 13834383..13834585 | 2206..2408 | 1015 | 100 | Plus |
chr3R | 27901430 | chr3R | 13833299..13833444 | 2060..2205 | 730 | 100 | Plus |
chr3R | 27901430 | chr3R | 13768453..13768559 | 1..107 | 535 | 100 | Plus |
chr3R | 27901430 | chr3R | 13831366..13831446 | 1867..1947 | 405 | 100 | Plus |
chr3R | 27901430 | chr3R | 13831694..13831758 | 2000..2064 | 325 | 100 | Plus |
chr3R | 27901430 | chr3R | 13831509..13831564 | 1945..2000 | 280 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18013148..18015794 | 3428..6076 | 13075 | 99.7 | Plus |
3R | 32079331 | 3R | 17966471..17967830 | 511..1870 | 6800 | 100 | Plus |
3R | 32079331 | 3R | 18011095..18011713 | 2754..3372 | 3095 | 100 | Plus |
3R | 32079331 | 3R | 17947194..17947598 | 108..512 | 2025 | 100 | Plus |
3R | 32079331 | 3R | 18010228..18010574 | 2409..2755 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 18009948..18010150 | 2206..2408 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 18008864..18009009 | 2060..2205 | 730 | 100 | Plus |
3R | 32079331 | 3R | 17944107..17944213 | 1..107 | 535 | 100 | Plus |
3R | 32079331 | 3R | 18006933..18007013 | 1867..1947 | 405 | 100 | Plus |
3R | 32079331 | 3R | 18007261..18007325 | 2000..2064 | 325 | 100 | Plus |
3R | 32079331 | 3R | 18007076..18007131 | 1945..2000 | 280 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 17753979..17756625 | 3428..6076 | 13095 | 99.7 | Plus |
3R | 31820162 | 3R | 17707302..17708661 | 511..1870 | 6800 | 100 | Plus |
3R | 31820162 | 3R | 17751926..17752544 | 2754..3372 | 3095 | 100 | Plus |
3R | 31820162 | 3R | 17688025..17688429 | 108..512 | 2025 | 100 | Plus |
3R | 31820162 | 3R | 17751059..17751405 | 2409..2755 | 1735 | 100 | Plus |
3R | 31820162 | 3R | 17750779..17750981 | 2206..2408 | 1015 | 100 | Plus |
3R | 31820162 | 3R | 17749695..17749840 | 2060..2205 | 730 | 100 | Plus |
3R | 31820162 | 3R | 17684938..17685044 | 1..107 | 535 | 100 | Plus |
3R | 31820162 | 3R | 17747764..17747844 | 1867..1947 | 405 | 100 | Plus |
3R | 31820162 | 3R | 17748092..17748156 | 2000..2064 | 325 | 100 | Plus |
3R | 31820162 | 3R | 17747907..17747962 | 1945..2000 | 280 | 100 | Plus |
X | 23527363 | X | 5619579..5619683 | 3600..3704 | 255 | 82.8 | Plus |
2R | 25260384 | 2R | 21150825..21150938 | 3719..3606 | 195 | 78 | Minus |
Blast to na_te.dros performed 2019-03-15 14:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2664 | 3518..3857 | 527 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7577 | 3009..3860 | 342 | 53.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2987 | 2761..3396 | 318 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2971 | 2761..3359 | 312 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2984 | 3178..3427 | 282 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2630 | 426..745 | 257 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2923 | 2790..3429 | 254 | 54.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2959 | 3119..3298 | 252 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2666 | 374..745 | 230 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2536 | 556..751 | 212 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7210 | 2761..3242 | 202 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6879 | 586..748 | 198 | 62.2 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1124..1244 | 3308..3426 | 193 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2468 | 550..727 | 192 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7567 | 2794..3689 | 191 | 53.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2550 | 475..736 | 177 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6934 | 2761..2862 | 162 | 67.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1069..1164 | 2761..2855 | 161 | 67 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1093..1163 | 2761..2832 | 159 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6836 | 2761..2832 | 158 | 70.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1151 | 2762..2832 | 153 | 71.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2853 | 2761..2851 | 150 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..3005 | 2485..3201 | 149 | 52.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3248..3344 | 2755..2853 | 148 | 65.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1052..1141 | 2766..2853 | 147 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6952 | 422..666 | 146 | 56.6 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 1205..1451 | 5752..5985 | 146 | 57.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3165..3322 | 503..665 | 145 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6887 | 2761..2832 | 141 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6857 | 2761..2832 | 140 | 67.6 | Plus |
BS | 5142 | BS BS 5142bp | 2042..2115 | 433..507 | 138 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2797..2889 | 2754..2851 | 136 | 64.6 | Plus |
INE-1 | 611 | INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). | 424..499 | 4871..4796 | 136 | 67.5 | Minus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 4848..5369 | 5397..5922 | 132 | 52.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3278..3340 | 468..528 | 130 | 71.9 | Plus |
RE30936.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:10:58 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 13831368..13831445 | 1869..1946 | 100 | -> | Plus |
chr3R | 13831511..13831564 | 1947..2000 | 100 | -> | Plus |
chr3R | 13831695..13831757 | 2001..2063 | 100 | -> | Plus |
chr3R | 13833303..13833444 | 2064..2205 | 100 | -> | Plus |
chr3R | 13836007..13836146 | 3233..3372 | 100 | == | Plus |
chr3R | 13837571..13837660 | 3428..3517 | 100 | == | Plus |
chr3R | 13837856..13837896 | 3713..3753 | 100 | == | Plus |
chr3R | 13837994..13838133 | 3851..3990 | 99 | == | Plus |
chr3R | 13834383..13834585 | 2206..2408 | 100 | -> | Plus |
chr3R | 13834661..13834729 | 2409..2477 | 100 | == | Plus |
chr3R | 13834834..13835007 | 2582..2755 | 100 | == | Plus |
chr3R | 13835624..13835781 | 2850..3007 | 100 | == | Plus |
chr3R | 13835846..13835912 | 3072..3138 | 100 | == | Plus |
chr3R | 13768453..13768559 | 1..107 | 100 | -> | Plus |
chr3R | 13771540..13771944 | 108..512 | 100 | -> | Plus |
chr3R | 13790811..13791192 | 513..894 | 90 | == | Plus |
chr3R | 13791251..13791391 | 953..1093 | 100 | == | Plus |
chr3R | 13791480..13791560 | 1182..1262 | 65 | == | Plus |
chr3R | 13791641..13791661 | 1343..1363 | 100 | == | Plus |
chr3R | 13791818..13791963 | 1520..1665 | 100 | == | Plus |
chr3R | 13792078..13792166 | 1780..1868 | 100 | -> | Plus |
chr3R | 13838207..13838428 | 4063..4284 | 100 | == | Plus |
chr3R | 13838480..13840204 | 4336..6061 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:50:24 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RB | 1..1848 | 522..2369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:48:37 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RB | 1..1848 | 522..2369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:21:35 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RO | 1..2247 | 549..2795 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:42:24 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RF | 1..1848 | 522..2369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:52:48 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RO | 1..2247 | 549..2795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:23 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42457-RA | 1..6059 | 1..6061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:48:37 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RB | 1..6059 | 1..6061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:21:35 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RN | 2..112 | 1..109 | 98 | <- | Plus |
cpo-RN | 184..6133 | 110..6061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:42:25 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RB | 1..3427 | 1..3429 | 99 | -> | Plus |
cpo-RB | 3467..6096 | 3430..6061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:52:48 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpo-RY | 2..112 | 1..109 | 98 | <- | Plus |
cpo-RY | 184..6131 | 110..6061 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:58 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17944107..17944213 | 1..107 | 100 | -> | Plus |
3R | 17947194..17947598 | 108..512 | 100 | -> | Plus |
3R | 18013148..18015779 | 3428..6061 | 99 | | Plus |
3R | 17966473..17967828 | 513..1868 | 100 | -> | Plus |
3R | 18006935..18007012 | 1869..1946 | 100 | -> | Plus |
3R | 18007078..18007131 | 1947..2000 | 100 | -> | Plus |
3R | 18007262..18007324 | 2001..2063 | 100 | -> | Plus |
3R | 18008868..18009009 | 2064..2205 | 100 | -> | Plus |
3R | 18009948..18010150 | 2206..2408 | 100 | -> | Plus |
3R | 18010228..18010574 | 2409..2755 | 100 | -> | Plus |
3R | 18011097..18011713 | 2756..3372 | 100 | -> | Plus |
3R | 18012096..18012150 | 3373..3427 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:58 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17944107..17944213 | 1..107 | 100 | -> | Plus |
3R | 17947194..17947598 | 108..512 | 100 | -> | Plus |
3R | 18013148..18015779 | 3428..6061 | 99 | | Plus |
3R | 17966473..17967828 | 513..1868 | 100 | -> | Plus |
3R | 18006935..18007012 | 1869..1946 | 100 | -> | Plus |
3R | 18007078..18007131 | 1947..2000 | 100 | -> | Plus |
3R | 18007262..18007324 | 2001..2063 | 100 | -> | Plus |
3R | 18008868..18009009 | 2064..2205 | 100 | -> | Plus |
3R | 18009948..18010150 | 2206..2408 | 100 | -> | Plus |
3R | 18010228..18010574 | 2409..2755 | 100 | -> | Plus |
3R | 18011097..18011713 | 2756..3372 | 100 | -> | Plus |
3R | 18012096..18012150 | 3373..3427 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:58 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17944107..17944213 | 1..107 | 100 | -> | Plus |
3R | 17947194..17947598 | 108..512 | 100 | -> | Plus |
3R | 18013148..18015779 | 3428..6061 | 99 | | Plus |
3R | 17966473..17967828 | 513..1868 | 100 | -> | Plus |
3R | 18006935..18007012 | 1869..1946 | 100 | -> | Plus |
3R | 18007078..18007131 | 1947..2000 | 100 | -> | Plus |
3R | 18007262..18007324 | 2001..2063 | 100 | -> | Plus |
3R | 18008868..18009009 | 2064..2205 | 100 | -> | Plus |
3R | 18009948..18010150 | 2206..2408 | 100 | -> | Plus |
3R | 18010228..18010574 | 2409..2755 | 100 | -> | Plus |
3R | 18011097..18011713 | 2756..3372 | 100 | -> | Plus |
3R | 18012096..18012150 | 3373..3427 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:21:35 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13835670..13835872 | 2206..2408 | 100 | -> | Plus |
arm_3R | 13835950..13836296 | 2409..2755 | 100 | -> | Plus |
arm_3R | 13769829..13769935 | 1..107 | 100 | -> | Plus |
arm_3R | 13772916..13773320 | 108..512 | 100 | -> | Plus |
arm_3R | 13792195..13793550 | 513..1868 | 100 | -> | Plus |
arm_3R | 13832657..13832734 | 1869..1946 | 100 | -> | Plus |
arm_3R | 13832800..13832853 | 1947..2000 | 100 | -> | Plus |
arm_3R | 13832984..13833046 | 2001..2063 | 100 | -> | Plus |
arm_3R | 13834590..13834731 | 2064..2205 | 100 | -> | Plus |
arm_3R | 13836819..13837435 | 2756..3372 | 100 | -> | Plus |
arm_3R | 13837818..13837872 | 3373..3427 | 100 | -> | Plus |
arm_3R | 13838870..13841501 | 3428..6061 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:34:07 Download gff for
RE30936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17688025..17688429 | 108..512 | 100 | -> | Plus |
3R | 17707304..17708659 | 513..1868 | 100 | -> | Plus |
3R | 17747766..17747843 | 1869..1946 | 100 | -> | Plus |
3R | 17747909..17747962 | 1947..2000 | 100 | -> | Plus |
3R | 17748093..17748155 | 2001..2063 | 100 | -> | Plus |
3R | 17749699..17749840 | 2064..2205 | 100 | -> | Plus |
3R | 17750779..17750981 | 2206..2408 | 100 | -> | Plus |
3R | 17751059..17751405 | 2409..2755 | 100 | -> | Plus |
3R | 17751928..17752544 | 2756..3372 | 100 | -> | Plus |
3R | 17752927..17752981 | 3373..3427 | 100 | -> | Plus |
3R | 17753979..17756610 | 3428..6061 | 99 | | Plus |
3R | 17684938..17685044 | 1..107 | 100 | -> | Plus |
RE30936.hyp Sequence
Translation from 2757 to 3473
> RE30936.hyp
MATATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQ
LQGKYLLSSDRGSIRIEFARSKMINEVTIMNTKAPPPPPPTAVAATVAPP
PPPAPMYILNGGGGVEHLLVPAPPPSAQQQQQQQQQQLQMQQLQQQMHLQ
QQHQQQQQLQLTVAAPCTAASTTTHSSTTSVVVNSLQHHQLHHPNQHHQN
HLFRDQQQQHQQQATIKQQSATTKERVWNHGMICSLKS*
RE30936.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpo-PS | 962 | CG43738-PS | 750..955 | 1..206 | 1073 | 99.5 | Plus |
velo-PC | 1833 | CG10107-PC | 50..153 | 91..227 | 164 | 36.7 | Plus |
velo-PA | 1833 | CG10107-PA | 50..153 | 91..227 | 164 | 36.7 | Plus |
ct-PD | 2165 | CG11387-PD | 565..706 | 95..231 | 163 | 33.1 | Plus |
ct-PC | 2383 | CG11387-PC | 783..924 | 95..231 | 163 | 33.1 | Plus |
RE30936.pep Sequence
Translation from 2757 to 3473
> RE30936.pep
MATATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQ
LQGKYLLSSDRGSIRIEFARSKMINEVTIMNTKAPPPPPPTAVAATVAPP
PPPAPMYILNGGGGVEHLLVPAPPPSAQQQQQQQQQQLQMQQLQQQMHLQ
QQHQQQQQLQLTVAAPCTAASTTTHSSTTSVVVNSLQHHQLHHPNQHHQN
HLFRDQQQQHQQQATIKQQSATTKERVWNHGMICSLKS*
RE30936.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG22582-PA | 745 | GG22582-PA | 434..649 | 26..224 | 450 | 79.8 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH15023-PA | 396 | GH15023-PA | 164..209 | 31..76 | 220 | 82.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpo-PS | 962 | CG43738-PS | 750..955 | 1..206 | 1073 | 99.5 | Plus |
velo-PC | 1833 | CG10107-PC | 50..153 | 91..227 | 164 | 36.7 | Plus |
velo-PA | 1833 | CG10107-PA | 50..153 | 91..227 | 164 | 36.7 | Plus |
ct-PD | 2165 | CG11387-PD | 565..706 | 95..231 | 163 | 33.1 | Plus |
sbb-PH | 2302 | CG5580-PH | 1788..1974 | 18..223 | 159 | 29.5 | Plus |
sbb-PD | 2302 | CG5580-PD | 1788..1974 | 18..223 | 159 | 29.5 | Plus |
sbb-PG | 2312 | CG5580-PG | 1798..1984 | 18..223 | 159 | 29.5 | Plus |
sbb-PJ | 2330 | CG5580-PJ | 1798..1984 | 18..223 | 159 | 29.5 | Plus |
CG6700-PB | 874 | CG6700-PB | 85..184 | 81..218 | 158 | 36.2 | Plus |
CG6700-PA | 874 | CG6700-PA | 85..184 | 81..218 | 158 | 36.2 | Plus |
Nlg3-PB | 1159 | CG34127-PB | 1004..1149 | 83..219 | 157 | 34 | Plus |
Nlg3-PC | 1159 | CG34127-PC | 1004..1149 | 83..219 | 157 | 34 | Plus |
Nlg3-PB | 1159 | CG34127-PB | 994..1150 | 88..213 | 156 | 33.1 | Plus |
Nlg3-PC | 1159 | CG34127-PC | 994..1150 | 88..213 | 156 | 33.1 | Plus |
Unr-PC | 1032 | CG7015-PC | 60..128 | 125..222 | 156 | 44.6 | Plus |
Unr-PA | 1039 | CG7015-PA | 60..128 | 125..222 | 156 | 44.6 | Plus |
Unr-PE | 1057 | CG7015-PE | 60..128 | 125..222 | 156 | 44.6 | Plus |
Unr-PD | 1057 | CG7015-PD | 60..128 | 125..222 | 156 | 44.6 | Plus |
Unr-PB | 1057 | CG7015-PB | 60..128 | 125..222 | 156 | 44.6 | Plus |
CG43347-PD | 2652 | CG43347-PD | 1501..1603 | 119..219 | 156 | 42.3 | Plus |
CG43347-PB | 2666 | CG43347-PB | 1515..1617 | 119..219 | 156 | 42.3 | Plus |
CG43347-PC | 2684 | CG43347-PC | 1533..1635 | 119..219 | 156 | 42.3 | Plus |
CG13739-PA | 875 | CG13739-PA | 133..272 | 73..210 | 155 | 35.4 | Plus |
Eip75B-PF | 1412 | CG8127-PF | 268..398 | 84..216 | 151 | 32.9 | Plus |
Eip75B-PE | 1412 | CG8127-PE | 268..398 | 84..216 | 151 | 32.9 | Plus |
Eip75B-PB | 1412 | CG8127-PB | 268..398 | 84..216 | 151 | 32.9 | Plus |
CG17233-PI | 772 | CG17233-PI | 35..273 | 1..222 | 150 | 27.8 | Plus |
CG17233-PD | 772 | CG17233-PD | 35..273 | 1..222 | 150 | 27.8 | Plus |
CG17233-PA | 1173 | CG17233-PA | 35..273 | 1..222 | 150 | 27.8 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI23707-PA | 214 | GI23707-PA | 57..149 | 29..118 | 233 | 55.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15270-PA | 349 | GM15270-PA | 25..202 | 26..206 | 471 | 92.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19193-PA | 342 | GD19193-PA | 1..195 | 1..205 | 479 | 88.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ23265-PA | 214 | GJ23265-PA | 1..182 | 48..205 | 246 | 49.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK11234-PA | 571 | GK11234-PA | 357..454 | 17..118 | 236 | 54.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25503-PA | 1140 | GE25503-PA | 822..1041 | 26..224 | 437 | 79.1 | Plus |