Clone RE31086 Report

Search the DGRC for RE31086

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:310
Well:86
Vector:pFlc-1
Associated Gene/TranscriptCG5664-RA
Protein status:RE31086.pep: gold
Sequenced Size:2631

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5664 2003-01-01 Sim4 clustering to Release 3
CG5664 2008-04-29 Release 5.5 accounting
CG5664 2008-08-15 Release 5.9 accounting
CG5664 2008-12-18 5.12 accounting

Clone Sequence Records

RE31086.complete Sequence

2631 bp (2631 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023888

> RE31086.complete
AAAAAATATCCCCGGCAAAAAAAAACACAAATTGTGTTTTTAATACTTTT
GATATTCTAGCGTAAATAATTGTTACGCGCTCTGATGTCCACCACAATTA
ACGCCATAACGTTAGTCCTGGTCTAGAGGTTGAAAAGAATCCTGAAACCA
AAGAACCTGAAGATCAGTTAGTAACCGAAGGAATTGCAATGGGTTCCAAC
GGCGAAGAATTATTGAATTTCGCAATGAACTCAGACAGCGTAAATACCAT
AAATTCAACAGCGGACGTCGCAGAAATTGTCTTAGACACTAATTTAGAGT
TCAACAAGACGATTCCTTTTCATCTGCCTCAGGAGTCGGACGTGGAAATG
GTCTCTGTCAGATCAGCTGCCGAACCTGATCCTAACAAATCAGATTCCAA
AGCAAGTAATAAATCAGATTCCAAATTAGATGGTAAATCGATATTAGAGT
CAGGAACCAAACCTCAGGCGGCCCCGGGGGAGGTTTTCGCTAGGAAGGCA
TGCCTCAAGAGGACCAACGAATATCCTGCTCCGCTGAATCATACTCTCAA
GAAACTGAACTGGAAGTTTAACCTGCGTATATTGATCTCAAATCTGTACA
TGAAGAGCGAGGATCGTCTTCCGGGAGCTTGTGTTTCCAGGTGTCTTTAC
AATACTAGTCTGTGCACGCAAAGACATCGGTGCTCCGCGCTTCCGGATGG
CCCAAACTTTGCGGCCGTTCAGGCGCTACGAACCACGTTGCACGGCCAGC
ACTACGATACATTCCTGGACATTCTGGAGATGATGGTGTTGCAGGGTGTC
TACCCAGGCGAAGGAGTCTTTGACAGACTAATAGATATGGCCATGATCCT
AATTGCCAAAGAGATAAGCGTAAAGGAGCTTGGCGACATCTACAACAAAC
TTATACGCACCTTTTTTCTTTTGGTCGACGCCTTTCCCCCGTGCTGGACA
GCCCTGCGTCCTTACTACTTGAGTTTTCTGGGCGTCTCGCATCCCCCCTT
GCGAGAAACACGTTCAACCAATTCTACCCAGAAGTTGCAGTTTTACATCG
ATCTTTTTGAGGAAAATCTAACGCATTGCAGCGATGAAGAGATACGTGAA
AACACCAAATTCTATGAAAAGTTTGTGTTTAACTTCTCGGAAGAGGAGGA
TGCGAATATGTCCCAGGAAACGGTCTTTCTGCGACATGTACAGCAGTATG
ACTGGCAGAGTGGGAAGCTTTGTCTGGACGACTTCAAGAGAATGTCGCCC
GCAGTCCGCTTGGCACGGCTCTGCGATGTCCTGAACATGCTCACATGTGT
ACTGGAAATAGAGTTCCTCTCCTGGCTGGATCATAACAGGTTGAGGCAGT
CGGAGTCGGAGCTGTTTCAGGAAAACTCCAGGTCATTTGCCTCGATCGTA
TTTGAAATGTCAGCAGGAACGCGTCTCAGCGACATCGTTAAACAAATTAT
GAGTCTGTATGGACAGGTAGTGGCCAAGTCCATGTACCCAGAACGCCAGA
GGATTCTCCAGCGCCTTGTTTCCCTAATTGTCGAAGTAAGCAACACGGCA
GAGCTAAAGTACGAGGATAATGCTGTGATATATCCTAGTATGGGACCCCA
AACCCATCTGCTCATCGAAGACTTCTTCAAGATTTTTAAATCGCACAATC
GCAAAAAGGTTCGCACCTACCTAATGGCTATTCGGCAGTTGGACCCCCCA
TATCTCCGCTTCGAGTTCACAGACCACTTTTTGAAGCTCTTTTTCTTTCC
CAAAAAAACTCATTTTGGACCGGAAAAGGTGGTCGGAGAATTTAGAGCGC
GTCAATGGGTAAAGTACAATCTTAAAAGTGAGATTGAGGATGACGATGAC
GAGCAGTTGTCGCGTGAGGATTACCTAGCATTACTCCTTAGCGCCTTAAA
AGACTATGACAAGTGGTTAAATCTTGGAGGCTTTTGGAAGTACCTAATGA
GTAAGGAGCTCGTGCAGCCGTTGACTGCGAGGATCAGTCCTGTGGGAAGA
GTTGTGCGCGAGGCGCCGAAGGTGTTCAGGCTCGATGCGTTGGAGGAGGA
GGTACACACCTGGAAGGAGCGCATGAGCACCAAAGTAATTACAGGTCGGG
AAAAGGTGAACCTGCCGGTGGCCAGTATCAATATGGCCAAGATGTGTGTG
CGCTATGGCGAGGATGTGAGACAAATGAGAGTTTTGCGACAACTCCTTCA
AAACGAAGTTTACAAGGAGGTCGATGTGTCGGACTGGTTAACCTATCTGA
ACAACTTTCTGAGCTATGAAGAGTCCATGTCTCCAGTAGACTCTGCGTCT
TCCTCCTTATTGGGAGGCATATGAGGGCCCAAATACGAAAATATATCTAA
GGCTCCATTAAATTTAAGGAATTTCATACCGAAAGTTCAAACTTAATTAT
TTTAAGCCCGTTAATTAGTATTTATCTAAATGGTTTCAAATAAGAATGCA
TTTGATTCGTTACCGTTTGTCATAAATTCCGTTTCTGTATTTCTCCATTG
CAAATATATATTTATGCTGTAACTAAATACACAATTACGTACACATTTAC
ACATAAATACAGCTACTGCGCATGTACATACATACATTAATAAATATATA
TGTGTATAATTACAGAAAAAAAAAAAAAAAA

RE31086.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5664-RA 2727 CG5664-RA 26..2638 2..2614 13050 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21427589..21428693 2614..1510 5510 99.9 Minus
chr3L 24539361 chr3L 21429473..21430316 845..2 4220 100 Minus
chr3L 24539361 chr3L 21428749..21429415 1511..845 3335 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:48:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21438629..21439733 2614..1510 5510 99.9 Minus
3L 28110227 3L 21440513..21441356 845..2 4220 100 Minus
3L 28110227 3L 21439789..21440455 1511..845 3335 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21431729..21432833 2614..1510 5510 99.9 Minus
3L 28103327 3L 21433613..21434456 845..2 4220 100 Minus
3L 28103327 3L 21432889..21433555 1511..845 3335 100 Minus
Blast to na_te.dros performed 2019-03-15 16:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1594..1700 2503..2612 137 62.2 Plus

RE31086.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:26:34 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21429473..21430316 1..845 99   Minus
chr3L 21427588..21428691 1512..2615 99 <- Minus
chr3L 21428749..21429414 846..1511 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:03 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2136 189..2324 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:31 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2136 189..2324 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:01:49 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2136 189..2324 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:20 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2136 189..2324 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:49 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2136 189..2324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:22:42 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2580 35..2615 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:31 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2580 35..2615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:49 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 7..2620 1..2615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:20 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 1..2580 35..2615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:49 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
CG5664-RA 7..2620 1..2615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:34 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21440513..21441356 1..845 99   Minus
3L 21438628..21439731 1512..2615 99 <- Minus
3L 21439789..21440454 846..1511 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:34 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21440513..21441356 1..845 99   Minus
3L 21438628..21439731 1512..2615 99 <- Minus
3L 21439789..21440454 846..1511 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:34 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21440513..21441356 1..845 99   Minus
3L 21438628..21439731 1512..2615 99 <- Minus
3L 21439789..21440454 846..1511 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:49 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21431728..21432831 1512..2615 99 <- Minus
arm_3L 21432889..21433554 846..1511 100 <- Minus
arm_3L 21433613..21434456 1..845 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:08:45 Download gff for RE31086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21431728..21432831 1512..2615 99 <- Minus
3L 21432889..21433554 846..1511 100 <- Minus
3L 21433613..21434456 1..845 99   Minus

RE31086.pep Sequence

Translation from 188 to 2323

> RE31086.pep
MGSNGEELLNFAMNSDSVNTINSTADVAEIVLDTNLEFNKTIPFHLPQES
DVEMVSVRSAAEPDPNKSDSKASNKSDSKLDGKSILESGTKPQAAPGEVF
ARKACLKRTNEYPAPLNHTLKKLNWKFNLRILISNLYMKSEDRLPGACVS
RCLYNTSLCTQRHRCSALPDGPNFAAVQALRTTLHGQHYDTFLDILEMMV
LQGVYPGEGVFDRLIDMAMILIAKEISVKELGDIYNKLIRTFFLLVDAFP
PCWTALRPYYLSFLGVSHPPLRETRSTNSTQKLQFYIDLFEENLTHCSDE
EIRENTKFYEKFVFNFSEEEDANMSQETVFLRHVQQYDWQSGKLCLDDFK
RMSPAVRLARLCDVLNMLTCVLEIEFLSWLDHNRLRQSESELFQENSRSF
ASIVFEMSAGTRLSDIVKQIMSLYGQVVAKSMYPERQRILQRLVSLIVEV
SNTAELKYEDNAVIYPSMGPQTHLLIEDFFKIFKSHNRKKVRTYLMAIRQ
LDPPYLRFEFTDHFLKLFFFPKKTHFGPEKVVGEFRARQWVKYNLKSEIE
DDDDEQLSREDYLALLLSALKDYDKWLNLGGFWKYLMSKELVQPLTARIS
PVGRVVREAPKVFRLDALEEEVHTWKERMSTKVITGREKVNLPVASINMA
KMCVRYGEDVRQMRVLRQLLQNEVYKEVDVSDWLTYLNNFLSYEESMSPV
DSASSSLLGGI*

RE31086.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24192-PA 726 GF24192-PA 64..714 49..698 2262 67.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13236-PA 693 GG13236-PA 1..693 1..711 2881 78.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16415-PA 665 GH16415-PA 25..660 56..695 1534 49.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5664-PA 711 CG5664-PA 1..711 1..711 3686 100 Plus
CG5664-PB 443 CG5664-PB 1..441 1..441 2289 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12496-PA 664 GI12496-PA 36..659 63..695 1674 49.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24581-PA 709 GL24581-PA 109..701 113..706 2020 62.9 Plus
Dper\GL13987-PA 594 GL13987-PA 37..594 109..691 1827 60 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19043-PA 709 GA19043-PA 109..701 113..706 2035 63.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22141-PA 649 GM22141-PA 1..434 1..441 2017 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12119-PA 605 GD12119-PA 1..441 1..441 2079 88.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12399-PA 680 GJ12399-PA 15..666 48..702 1655 49.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20416-PA 705 GK20416-PA 28..692 18..707 1956 54.6 Plus
Dwil\GK22065-PA 591 GK22065-PA 22..583 121..693 1618 54.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22334-PA 700 GE22334-PA 1..693 1..704 2871 78 Plus
Dyak\GE22976-PA 662 GE22976-PA 1..655 54..704 2792 80.6 Plus

RE31086.hyp Sequence

Translation from 188 to 2323

> RE31086.hyp
MGSNGEELLNFAMNSDSVNTINSTADVAEIVLDTNLEFNKTIPFHLPQES
DVEMVSVRSAAEPDPNKSDSKASNKSDSKLDGKSILESGTKPQAAPGEVF
ARKACLKRTNEYPAPLNHTLKKLNWKFNLRILISNLYMKSEDRLPGACVS
RCLYNTSLCTQRHRCSALPDGPNFAAVQALRTTLHGQHYDTFLDILEMMV
LQGVYPGEGVFDRLIDMAMILIAKEISVKELGDIYNKLIRTFFLLVDAFP
PCWTALRPYYLSFLGVSHPPLRETRSTNSTQKLQFYIDLFEENLTHCSDE
EIRENTKFYEKFVFNFSEEEDANMSQETVFLRHVQQYDWQSGKLCLDDFK
RMSPAVRLARLCDVLNMLTCVLEIEFLSWLDHNRLRQSESELFQENSRSF
ASIVFEMSAGTRLSDIVKQIMSLYGQVVAKSMYPERQRILQRLVSLIVEV
SNTAELKYEDNAVIYPSMGPQTHLLIEDFFKIFKSHNRKKVRTYLMAIRQ
LDPPYLRFEFTDHFLKLFFFPKKTHFGPEKVVGEFRARQWVKYNLKSEIE
DDDDEQLSREDYLALLLSALKDYDKWLNLGGFWKYLMSKELVQPLTARIS
PVGRVVREAPKVFRLDALEEEVHTWKERMSTKVITGREKVNLPVASINMA
KMCVRYGEDVRQMRVLRQLLQNEVYKEVDVSDWLTYLNNFLSYEESMSPV
DSASSSLLGGI*

RE31086.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5664-PA 711 CG5664-PA 1..711 1..711 3686 100 Plus
CG5664-PB 443 CG5664-PB 1..441 1..441 2289 100 Plus