Clone RE31178 Report

Search the DGRC for RE31178

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:311
Well:78
Vector:pFlc-1
Associated Gene/TranscriptCG10050-RA
Protein status:RE31178.pep: gold
Preliminary Size:756
Sequenced Size:1906

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10050 2001-12-14 Blastp of sequenced clone
CG10050 2002-01-01 Sim4 clustering to Release 2
CG10050 2003-01-01 Sim4 clustering to Release 3
CG10050 2008-04-29 Release 5.5 accounting
CG10050 2008-08-15 Release 5.9 accounting
CG10050 2008-12-18 5.12 accounting

Clone Sequence Records

RE31178.complete Sequence

1906 bp (1906 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071283

> RE31178.complete
AGTTGCGAATTGTTGCTTACGGATTTCTTATCGTGCGGAATATAAACTTA
GCATTTTTCTAATTTAATCAATTATAAGTATGGAGGATGACGCGTGGCTG
GACCTCGTGGGCATCAGCGCCGATCCGCCCAACAGACGCAACAAGTGCGA
GAAATGCAAACGACCCGTGGTTGTTTGCTGGTGCCCGGCTTTACCGCATC
CACCTGAGGCGGTGTCCTCACAGATTGTTATACTGCAACACCCTGCAGAG
GAGAAGAGATCGCTACGCACTGCACTGATGCTGCAGTTGGGTTTGGAACC
GGGAAAATGTGTCGTCTACAAAGGCAAGCGGTTTCCAAACCATAGAAACC
ATGCTGATCTGCAGAGGATTTTGGACTCTCCACAAACACTGCTTCTGTAT
CCCAGTCGGGACTCGGTCCCACTGGAAGAGGTGGACCACAGTGCGGGTCC
TTATACACTGGTGCTCATCGATGGTACCTGGCCTCAGGCTAAAGCCATTT
ACGCTAGCAGTCCGGCTCTACACCGCCTGCGACAGGTGAAACTCATCGCC
GTGGGTATAAGTGACTACATCATCCGTACACAGCCTACTGAAGGATGCCT
TAGCACACTAGAGACCGCTGCGCAATGCCTGGCAGTGCTGGAATCTCGGC
CAGAGCTGAGGCAAACGCTCGTGCGACCGCTGCACACGCTGTGCAAGTAC
CAACTAGACAACGGAGCCGTGGAGCACCAGTCCAAGGAGTTTCTATTGAA
GAACAACCAGTACCCCAAGCCCATTGGCAAGCGGCTCAGCCGTCTGCTTA
GAAACACCGCCTGCGATGGCAATGAGGAAACGTGATAGCCGGGGCAGAAA
ATACCAAATAACTTGCAGGTGCCTGTGCTTTATAGCCAATTTTGTGTTCC
GGTCGTAGCCGTATTTGATTTAGTGACGCTAACATTATAATTTTCTACTG
ATAAGTCCGAGATGTGACCTTTGATGTTATTCATACAGTGGGTTTGTTTC
TAGCATCCGTGAGGGCTCTAGTAAACACGCACTGACGATGGCATAGCCCC
GCATGCAAGCATTCGTCTCGTCCTCTGAGGATTACACATTAAAGATTTCG
TTTGTAATTAAAAAGTTCTGCCTAGAACACTCACTGCCTTCAGCTTCGCA
GGCCTCAACGGAATCGCCAGTGGCTGGCCAAACATATTTGCGCACCAGAT
CCGTATTTAACTTATAGTCCGTCATCAAACCGGACTTTTCGAAAAAGCAG
TGAAAATAGCACTGCAAGTAATCTTTGAGTATCGGGAGGCGAAGGATCTG
CAAAGCACACCTACCATGCTGGTTACCTTATCCTTGTCATCTGGCAAATC
CCCAGTGTTATTAAACTGCAAGACATTGGCTGAAAGAGGCGATAAATGTA
GTCATATATTGCCTTCGTTAACCTTTGCACTCACTCATCGACGTTATGAA
ACTAGCATTGCAGTTACGATTAACCTCGTCAAAATCTACGTAGTCAGCCT
CTCTAGGAGCTGAAGTGGTGGTGGATATGTCATCCACATCGCCATCGAAA
CTATCATAGTTTATGATGAAAATATCACCATTATCCTTGGCGTGATCCTG
TAGAGCCCTGGCACAATTCGGGCTCAAGATCAGAAAAGCAATGACAGCAC
AAGCTCTAACTAACGCGGAATACATCTTGAACAAACAAAGTGCTGGATGG
GATTCTGTGACTGACCTTTTATAGATCACATTCTCATGCATTGAATAGAT
TTCATTGTGCCATGCACAGTTACAATAATTTGACATATTATTTCCGGAAA
TTGAGTACCAATAAAGTATACTTTTAATGAACTTCACACAAAAGAATCTA
GCTTTTCAGTGATTGTTCAATTATAGATAATTTCTCACTGAAAAAAAAAA
AAAAAA

RE31178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10050-RA 1965 CG10050-RA 51..1940 1..1889 9410 99.9 Plus
Pbprp4-RA 579 Pbprp4-RA 1..260 1694..1435 1300 100 Minus
Pbprp4-RC 698 Pbprp4-RC 154..379 1660..1435 1130 100 Minus
Pbprp4-RA 579 Pbprp4-RA 325..452 1262..1135 640 100 Minus
Pbprp4-RC 698 Pbprp4-RC 444..571 1262..1135 640 100 Minus
Pbprp4-RA 579 Pbprp4-RA 453..579 1074..949 595 99.2 Minus
Pbprp4-RC 698 Pbprp4-RC 572..698 1074..949 595 99.2 Minus
Pbprp4-RA 579 Pbprp4-RA 261..325 1379..1315 325 100 Minus
Pbprp4-RC 698 Pbprp4-RC 380..444 1379..1315 325 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3076104..3077834 160..1889 8590 99.9 Plus
chr3R 27901430 chr3R 3075883..3076041 1..159 795 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7250020..7251750 160..1889 8605 99.9 Plus
3R 32079331 3R 7249799..7249957 1..159 795 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6990851..6992581 160..1889 8615 99.9 Plus
3R 31820162 3R 6990630..6990788 1..159 795 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:19:53 has no hits.

RE31178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:20:51 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3075883..3076041 1..159 100 -> Plus
chr3R 3076104..3077834 160..1890 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:06 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..756 80..835 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:47 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..756 80..835 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:26:28 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..756 80..835 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:56 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..756 80..835 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:00:44 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..756 80..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:23 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..1888 1..1887 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:47 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..1888 1..1887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:28 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 5..1894 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:56 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 1..1888 1..1887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:00:44 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
CG10050-RA 5..1894 1..1889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:20:51 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7249799..7249957 1..159 100 -> Plus
3R 7250020..7251750 160..1890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:20:51 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7249799..7249957 1..159 100 -> Plus
3R 7250020..7251750 160..1890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:20:51 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7249799..7249957 1..159 100 -> Plus
3R 7250020..7251750 160..1890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:28 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3075521..3075679 1..159 100 -> Plus
arm_3R 3075742..3077472 160..1890 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:05 Download gff for RE31178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6990851..6992581 160..1890 99   Plus
3R 6990630..6990788 1..159 100 -> Plus

RE31178.pep Sequence

Translation from 79 to 834

> RE31178.pep
MEDDAWLDLVGISADPPNRRNKCEKCKRPVVVCWCPALPHPPEAVSSQIV
ILQHPAEEKRSLRTALMLQLGLEPGKCVVYKGKRFPNHRNHADLQRILDS
PQTLLLYPSRDSVPLEEVDHSAGPYTLVLIDGTWPQAKAIYASSPALHRL
RQVKLIAVGISDYIIRTQPTEGCLSTLETAAQCLAVLESRPELRQTLVRP
LHTLCKYQLDNGAVEHQSKEFLLKNNQYPKPIGKRLSRLLRNTACDGNEE
T*

RE31178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17666-PA 260 GF17666-PA 4..255 1..250 1186 90.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13963-PA 251 GG13963-PA 1..251 1..251 1296 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18297-PA 261 GH18297-PA 6..256 3..251 1140 86.1 Plus
Dgri\GH22441-PA 251 GH22441-PA 6..91 3..88 396 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10050-PA 251 CG10050-PA 1..251 1..251 1329 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24108-PA 265 GI24108-PA 5..249 3..245 1119 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12433-PA 252 GL12433-PA 1..250 1..250 1176 86.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10033-PA 252 GA10033-PA 1..250 1..250 1176 86.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10945-PA 251 GM10945-PA 1..251 1..251 1315 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19925-PA 251 GD19925-PA 1..251 1..251 1311 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10931-PA 264 GJ10931-PA 5..249 3..245 1136 86.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12004-PA 258 GK12004-PA 1..249 1..247 1132 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24916-PA 251 GE24916-PA 1..251 1..251 1298 97.6 Plus

RE31178.hyp Sequence

Translation from 79 to 834

> RE31178.hyp
MEDDAWLDLVGISADPPNRRNKCEKCKRPVVVCWCPALPHPPEAVSSQIV
ILQHPAEEKRSLRTALMLQLGLEPGKCVVYKGKRFPNHRNHADLQRILDS
PQTLLLYPSRDSVPLEEVDHSAGPYTLVLIDGTWPQAKAIYASSPALHRL
RQVKLIAVGISDYIIRTQPTEGCLSTLETAAQCLAVLESRPELRQTLVRP
LHTLCKYQLDNGAVEHQSKEFLLKNNQYPKPIGKRLSRLLRNTACDGNEE
T*

RE31178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10050-PA 251 CG10050-PA 1..251 1..251 1329 100 Plus