BDGP Sequence Production Resources |
Search the DGRC for RE31178
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 311 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10050-RA |
Protein status: | RE31178.pep: gold |
Preliminary Size: | 756 |
Sequenced Size: | 1906 |
Gene | Date | Evidence |
---|---|---|
CG10050 | 2001-12-14 | Blastp of sequenced clone |
CG10050 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10050 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10050 | 2008-04-29 | Release 5.5 accounting |
CG10050 | 2008-08-15 | Release 5.9 accounting |
CG10050 | 2008-12-18 | 5.12 accounting |
1906 bp (1906 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071283
> RE31178.complete AGTTGCGAATTGTTGCTTACGGATTTCTTATCGTGCGGAATATAAACTTA GCATTTTTCTAATTTAATCAATTATAAGTATGGAGGATGACGCGTGGCTG GACCTCGTGGGCATCAGCGCCGATCCGCCCAACAGACGCAACAAGTGCGA GAAATGCAAACGACCCGTGGTTGTTTGCTGGTGCCCGGCTTTACCGCATC CACCTGAGGCGGTGTCCTCACAGATTGTTATACTGCAACACCCTGCAGAG GAGAAGAGATCGCTACGCACTGCACTGATGCTGCAGTTGGGTTTGGAACC GGGAAAATGTGTCGTCTACAAAGGCAAGCGGTTTCCAAACCATAGAAACC ATGCTGATCTGCAGAGGATTTTGGACTCTCCACAAACACTGCTTCTGTAT CCCAGTCGGGACTCGGTCCCACTGGAAGAGGTGGACCACAGTGCGGGTCC TTATACACTGGTGCTCATCGATGGTACCTGGCCTCAGGCTAAAGCCATTT ACGCTAGCAGTCCGGCTCTACACCGCCTGCGACAGGTGAAACTCATCGCC GTGGGTATAAGTGACTACATCATCCGTACACAGCCTACTGAAGGATGCCT TAGCACACTAGAGACCGCTGCGCAATGCCTGGCAGTGCTGGAATCTCGGC CAGAGCTGAGGCAAACGCTCGTGCGACCGCTGCACACGCTGTGCAAGTAC CAACTAGACAACGGAGCCGTGGAGCACCAGTCCAAGGAGTTTCTATTGAA GAACAACCAGTACCCCAAGCCCATTGGCAAGCGGCTCAGCCGTCTGCTTA GAAACACCGCCTGCGATGGCAATGAGGAAACGTGATAGCCGGGGCAGAAA ATACCAAATAACTTGCAGGTGCCTGTGCTTTATAGCCAATTTTGTGTTCC GGTCGTAGCCGTATTTGATTTAGTGACGCTAACATTATAATTTTCTACTG ATAAGTCCGAGATGTGACCTTTGATGTTATTCATACAGTGGGTTTGTTTC TAGCATCCGTGAGGGCTCTAGTAAACACGCACTGACGATGGCATAGCCCC GCATGCAAGCATTCGTCTCGTCCTCTGAGGATTACACATTAAAGATTTCG TTTGTAATTAAAAAGTTCTGCCTAGAACACTCACTGCCTTCAGCTTCGCA GGCCTCAACGGAATCGCCAGTGGCTGGCCAAACATATTTGCGCACCAGAT CCGTATTTAACTTATAGTCCGTCATCAAACCGGACTTTTCGAAAAAGCAG TGAAAATAGCACTGCAAGTAATCTTTGAGTATCGGGAGGCGAAGGATCTG CAAAGCACACCTACCATGCTGGTTACCTTATCCTTGTCATCTGGCAAATC CCCAGTGTTATTAAACTGCAAGACATTGGCTGAAAGAGGCGATAAATGTA GTCATATATTGCCTTCGTTAACCTTTGCACTCACTCATCGACGTTATGAA ACTAGCATTGCAGTTACGATTAACCTCGTCAAAATCTACGTAGTCAGCCT CTCTAGGAGCTGAAGTGGTGGTGGATATGTCATCCACATCGCCATCGAAA CTATCATAGTTTATGATGAAAATATCACCATTATCCTTGGCGTGATCCTG TAGAGCCCTGGCACAATTCGGGCTCAAGATCAGAAAAGCAATGACAGCAC AAGCTCTAACTAACGCGGAATACATCTTGAACAAACAAAGTGCTGGATGG GATTCTGTGACTGACCTTTTATAGATCACATTCTCATGCATTGAATAGAT TTCATTGTGCCATGCACAGTTACAATAATTTGACATATTATTTCCGGAAA TTGAGTACCAATAAAGTATACTTTTAATGAACTTCACACAAAAGAATCTA GCTTTTCAGTGATTGTTCAATTATAGATAATTTCTCACTGAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10050-RA | 1965 | CG10050-RA | 51..1940 | 1..1889 | 9410 | 99.9 | Plus |
Pbprp4-RA | 579 | Pbprp4-RA | 1..260 | 1694..1435 | 1300 | 100 | Minus |
Pbprp4-RC | 698 | Pbprp4-RC | 154..379 | 1660..1435 | 1130 | 100 | Minus |
Pbprp4-RA | 579 | Pbprp4-RA | 325..452 | 1262..1135 | 640 | 100 | Minus |
Pbprp4-RC | 698 | Pbprp4-RC | 444..571 | 1262..1135 | 640 | 100 | Minus |
Pbprp4-RA | 579 | Pbprp4-RA | 453..579 | 1074..949 | 595 | 99.2 | Minus |
Pbprp4-RC | 698 | Pbprp4-RC | 572..698 | 1074..949 | 595 | 99.2 | Minus |
Pbprp4-RA | 579 | Pbprp4-RA | 261..325 | 1379..1315 | 325 | 100 | Minus |
Pbprp4-RC | 698 | Pbprp4-RC | 380..444 | 1379..1315 | 325 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 3075883..3076041 | 1..159 | 100 | -> | Plus |
chr3R | 3076104..3077834 | 160..1890 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..756 | 80..835 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..756 | 80..835 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..756 | 80..835 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..756 | 80..835 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..756 | 80..835 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..1888 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..1888 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 5..1894 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 1..1888 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10050-RA | 5..1894 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7249799..7249957 | 1..159 | 100 | -> | Plus |
3R | 7250020..7251750 | 160..1890 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7249799..7249957 | 1..159 | 100 | -> | Plus |
3R | 7250020..7251750 | 160..1890 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7249799..7249957 | 1..159 | 100 | -> | Plus |
3R | 7250020..7251750 | 160..1890 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 3075521..3075679 | 1..159 | 100 | -> | Plus |
arm_3R | 3075742..3077472 | 160..1890 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6990851..6992581 | 160..1890 | 99 | Plus | |
3R | 6990630..6990788 | 1..159 | 100 | -> | Plus |
Translation from 79 to 834
> RE31178.pep MEDDAWLDLVGISADPPNRRNKCEKCKRPVVVCWCPALPHPPEAVSSQIV ILQHPAEEKRSLRTALMLQLGLEPGKCVVYKGKRFPNHRNHADLQRILDS PQTLLLYPSRDSVPLEEVDHSAGPYTLVLIDGTWPQAKAIYASSPALHRL RQVKLIAVGISDYIIRTQPTEGCLSTLETAAQCLAVLESRPELRQTLVRP LHTLCKYQLDNGAVEHQSKEFLLKNNQYPKPIGKRLSRLLRNTACDGNEE T*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17666-PA | 260 | GF17666-PA | 4..255 | 1..250 | 1186 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13963-PA | 251 | GG13963-PA | 1..251 | 1..251 | 1296 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18297-PA | 261 | GH18297-PA | 6..256 | 3..251 | 1140 | 86.1 | Plus |
Dgri\GH22441-PA | 251 | GH22441-PA | 6..91 | 3..88 | 396 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10050-PA | 251 | CG10050-PA | 1..251 | 1..251 | 1329 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24108-PA | 265 | GI24108-PA | 5..249 | 3..245 | 1119 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12433-PA | 252 | GL12433-PA | 1..250 | 1..250 | 1176 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10033-PA | 252 | GA10033-PA | 1..250 | 1..250 | 1176 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10945-PA | 251 | GM10945-PA | 1..251 | 1..251 | 1315 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19925-PA | 251 | GD19925-PA | 1..251 | 1..251 | 1311 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10931-PA | 264 | GJ10931-PA | 5..249 | 3..245 | 1136 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12004-PA | 258 | GK12004-PA | 1..249 | 1..247 | 1132 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24916-PA | 251 | GE24916-PA | 1..251 | 1..251 | 1298 | 97.6 | Plus |
Translation from 79 to 834
> RE31178.hyp MEDDAWLDLVGISADPPNRRNKCEKCKRPVVVCWCPALPHPPEAVSSQIV ILQHPAEEKRSLRTALMLQLGLEPGKCVVYKGKRFPNHRNHADLQRILDS PQTLLLYPSRDSVPLEEVDHSAGPYTLVLIDGTWPQAKAIYASSPALHRL RQVKLIAVGISDYIIRTQPTEGCLSTLETAAQCLAVLESRPELRQTLVRP LHTLCKYQLDNGAVEHQSKEFLLKNNQYPKPIGKRLSRLLRNTACDGNEE T*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10050-PA | 251 | CG10050-PA | 1..251 | 1..251 | 1329 | 100 | Plus |