Clone RE31221 Report

Search the DGRC for RE31221

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:312
Well:21
Vector:pFlc-1
Associated Gene/TranscriptCG13532-RA
Protein status:RE31221.pep: gold
Preliminary Size:841
Sequenced Size:1829

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13532 2001-12-14 Blastp of sequenced clone
CG13532 2002-01-01 Sim4 clustering to Release 2
CG13532 2003-01-01 Sim4 clustering to Release 3
CG13532 2008-04-29 Release 5.5 accounting
CG13532 2008-08-15 Release 5.9 accounting
CG13532 2008-12-18 5.12 accounting

Clone Sequence Records

RE31221.complete Sequence

1829 bp (1829 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071285

> RE31221.complete
GGACTCCATTCCGCACGCACACACTATCGCAGCCGTAGATGTTCGTGTAT
GTGGGCTGCAAAAAGTCGATTTTTCGCTAACAAAAAGTATCCTGTCCTGT
GTGGGCAAAACTTTAAATGGCCCGGGCCATAAAAGGAGATTGCCATAGTT
GCGACTTGCAGTGGGAGATGTCCTGCGAGGAGCTGCTGCGTCCGAGGTGC
TGAGCTCGTTGGGCCGAGAAAAGTTTGTGCCAGTCAGTGCCCGTATCCCC
AGAAAAAAGCATCCCCCTGCCATTCTGCTTCTGTGATGAGATTGGTGATA
ATGAGTGCAACCAAAGGCCCCCATGTATCCACATAAAAGCGCAAGCCGAA
AACAGACAGCACCGCGATAAGTAGAAACGTCCAACCACCACAGAAGTATT
CATTGCCACGCACAACGACGGCGCGTCCTCGCGGAACGGGAGGATCACGA
GCGACAGGATCTGGAGTGCCCAGCGACGCTGAGGCAAACTAGTCGGCTGT
CATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCACGCTGCTGGCCGTGC
TCGCGTTACTCTCGGTCACTCACTCGGTGCGCATCACCAACCTGCGGGTG
CCACGCACCTACACGCTGTTCCGAGACCACGAACCCGATCCTCTGGTGCT
CGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAGGATTCGTCCTCAAAT
GGCTGTTCAATAACCACTCCATCTACCAGTGGATACCATCGGTCAAGGGG
TTCGCCATGGGCTTCATGAAGTCGAAGATAGACACCAAAATATTCACTAT
GGAGGGCAGTCCCGGTGTTATATCGATAAAGAATCCCGACTGGAACATGA
CGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAGTCCACGGATAAGCGG
AGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGATTTCATGCTGGAAGC
GCGGATGAGCGGTTCGCGTATGGACGTGGACATCATGTGTGCGGTCCAGC
ACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTTGACACCCACATACTG
GACTCGGTACTGACGCAGTTGGACCAGGACCCCAGTGGCCTCTACAGCAT
GACCGTTCGCACCCGCATTCCTAGAGATCAACTCGAGTCCCCCACCCCAA
TCACCTGTGCGTTTATCCTAGTTGGCACCAACTACACCAAGCGCCGGGAG
ACTATTTTCTATGATAAGGCCTCAACTATACAACGCAAGTGGACAACGGT
CGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAAGCAGTTAGTTTGGTA
GTGTCCTTTTTATGTAGGCTACATTCGTTTTTATGTTTGGACTAGGAACT
TTGATACTCCTTAATTTTTAATAGACTTTTAACGGATAAACGTAATTTTT
TGCGGTATTTTTAAAAAAAAGCGCTTATTTTGTACATGCATGTATTTGTA
AGGATAACGAAACACAAAACAAAAACAAACACCACAATGCGTAAGCAAAC
GAACCCATAAAGACAAAAAGGACAACAGTAAAGCATAACAAGAAATTCTT
GTATTCATATATTTACCACATAAATAAAATATATATGATAGTTATATACG
ATGTATAGGTCTAATTGAGTACAGAAACGCTAATAAAAAAAATACGAAAA
GAAACATTAAAAGTGCATTAAACCAACCGCCTTCGTCGTCGTTTTTCTTT
GCTAAAAAACTAAACAAATTTTAAAATTGTATTTTTATTGTAAAATTACG
CTGTAGATTGGACTCAAGTCACACATATAATAAAAAAAAGTCTCAGCATG
ACTAATTAAATCCAAAAAAAAAAAAAAAA

RE31221.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 2026 CG13532-RA 208..2023 1..1816 9080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18760344..18760943 1213..1813 2910 99.3 Plus
chr2R 21145070 chr2R 18757815..18758379 1..565 2780 99.5 Plus
chr2R 21145070 chr2R 18758460..18758655 565..760 905 97.4 Plus
chr2R 21145070 chr2R 18759972..18760158 1032..1218 905 98.9 Plus
chr2R 21145070 chr2R 18758748..18758911 759..922 805 99.4 Plus
chr2R 21145070 chr2R 18759784..18759895 922..1033 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22873827..22874430 1213..1816 3020 100 Plus
2R 25286936 2R 22871295..22871859 1..565 2825 100 Plus
2R 25286936 2R 22871941..22872136 565..760 980 100 Plus
2R 25286936 2R 22873455..22873641 1032..1218 920 99.5 Plus
2R 25286936 2R 22872229..22872392 759..922 820 100 Plus
2R 25286936 2R 22873267..22873378 922..1033 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22875026..22875629 1213..1816 3020 100 Plus
2R 25260384 2R 22872494..22873058 1..565 2825 100 Plus
2R 25260384 2R 22873140..22873335 565..760 980 100 Plus
2R 25260384 2R 22874654..22874840 1032..1218 920 99.4 Plus
2R 25260384 2R 22873428..22873591 759..922 820 100 Plus
2R 25260384 2R 22874466..22874577 922..1033 560 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:42:25 has no hits.

RE31221.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:43:10 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18757815..18758379 1..565 99 -> Plus
chr2R 18758461..18758654 566..759 97 -> Plus
chr2R 18758749..18758911 760..922 99 -> Plus
chr2R 18759785..18759893 923..1031 100 -> Plus
chr2R 18759972..18760153 1032..1213 99 -> Plus
chr2R 18760345..18760943 1214..1813 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:10 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 502..1293 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:34 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 502..1293 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:20 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 502..1293 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:48 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 502..1293 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:50 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 502..1293 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:35 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 4..1816 1..1813 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:34 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..1813 1..1813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:20 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 106..1918 1..1813 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:48 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 4..1816 1..1813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:50 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 106..1918 1..1813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:10 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22872230..22872392 760..922 100 -> Plus
2R 22873455..22873636 1032..1213 100 -> Plus
2R 22873268..22873376 923..1031 100 -> Plus
2R 22871295..22871859 1..565 100 -> Plus
2R 22871942..22872135 566..759 100 -> Plus
2R 22873828..22874427 1214..1813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:10 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22872230..22872392 760..922 100 -> Plus
2R 22873455..22873636 1032..1213 100 -> Plus
2R 22873268..22873376 923..1031 100 -> Plus
2R 22871295..22871859 1..565 100 -> Plus
2R 22871942..22872135 566..759 100 -> Plus
2R 22873828..22874427 1214..1813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:10 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22872230..22872392 760..922 100 -> Plus
2R 22873455..22873636 1032..1213 100 -> Plus
2R 22873268..22873376 923..1031 100 -> Plus
2R 22871295..22871859 1..565 100 -> Plus
2R 22871942..22872135 566..759 100 -> Plus
2R 22873828..22874427 1214..1813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:20 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18758818..18759382 1..565 100 -> Plus
arm_2R 18759465..18759658 566..759 100 -> Plus
arm_2R 18759753..18759915 760..922 100 -> Plus
arm_2R 18760791..18760899 923..1031 100 -> Plus
arm_2R 18760978..18761159 1032..1213 100 -> Plus
arm_2R 18761351..18761950 1214..1813 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:48 Download gff for RE31221.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22873159..22873352 566..759 100 -> Plus
2R 22873447..22873609 760..922 100 -> Plus
2R 22874485..22874593 923..1031 100 -> Plus
2R 22874672..22874853 1032..1213 100 -> Plus
2R 22872512..22873076 1..565 100 -> Plus
2R 22875045..22875644 1214..1813 100   Plus

RE31221.hyp Sequence

Translation from 501 to 1292

> RE31221.hyp
MAGWRGRGLRATLLAVLALLSVTHSVRITNLRVPRTYTLFRDHEPDPLVL
DCEVEIGPREQGFVLKWLFNNHSIYQWIPSVKGFAMGFMKSKIDTKIFTM
EGSPGVISIKNPDWNMTGEYTCAVQTFESTDKRSARLQIIVPESDFMLEA
RMSGSRMDVDIMCAVQHVFPQPMLSVMFDTHILDSVLTQLDQDPSGLYSM
TVRTRIPRDQLESPTPITCAFILVGTNYTKRRETIFYDKASTIQRKWTTV
AVVMSIASLALSS*

RE31221.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 263 CG13532-PA 1..263 1..263 1364 100 Plus
CG5597-PA 260 CG5597-PA 33..173 39..177 168 27.6 Plus

RE31221.pep Sequence

Translation from 501 to 1292

> RE31221.pep
MAGWRGRGLRATLLAVLALLSVTHSVRITNLRVPRTYTLFRDHEPDPLVL
DCEVEIGPREQGFVLKWLFNNHSIYQWIPSVKGFAMGFMKSKIDTKIFTM
EGSPGVISIKNPDWNMTGEYTCAVQTFESTDKRSARLQIIVPESDFMLEA
RMSGSRMDVDIMCAVQHVFPQPMLSVMFDTHILDSVLTQLDQDPSGLYSM
TVRTRIPRDQLESPTPITCAFILVGTNYTKRRETIFYDKASTIQRKWTTV
AVVMSIASLALSS*

RE31221.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13550-PA 262 GF13550-PA 1..262 1..263 1254 90.2 Plus
Dana\GF12870-PA 261 GF12870-PA 41..228 47..234 180 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22809-PA 263 GG22809-PA 1..263 1..263 1385 98.1 Plus
Dere\GG22897-PA 260 GG22897-PA 33..173 39..177 162 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21798-PA 263 GH21798-PA 1..263 1..263 1192 87.8 Plus
Dgri\GH21689-PA 235 GH21689-PA 30..189 47..202 146 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 263 CG13532-PA 1..263 1..263 1364 100 Plus
CG5597-PA 260 CG5597-PA 33..173 39..177 168 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20547-PA 263 GI20547-PA 1..263 1..263 1205 89.4 Plus
Dmoj\GI18843-PA 260 GI18843-PA 30..197 37..201 157 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10131-PA 261 GL10131-PA 1..261 1..263 1255 90.5 Plus
Dper\GL11173-PA 260 GL11173-PA 33..173 39..177 162 25.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12347-PA 261 GA12347-PA 1..261 1..263 1255 90.5 Plus
Dpse\GA18997-PA 260 GA18997-PA 33..173 39..177 162 25.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15966-PA 263 GM15966-PA 1..263 1..263 1410 100 Plus
Dsec\GM13667-PA 135 GM13667-PA 2..135 46..177 170 29 Plus
Dsec\GM16057-PA 260 GM16057-PA 33..173 39..177 170 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11718-PA 263 GD11718-PA 1..263 1..263 1410 100 Plus
Dsim\GD11805-PA 260 GD11805-PA 33..173 39..177 168 27.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22400-PA 263 GJ22400-PA 1..263 1..263 1199 88.6 Plus
Dvir\GJ21874-PA 258 GJ21874-PA 37..227 46..236 158 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20788-PA 261 GK20788-PA 22..261 24..263 1208 93.3 Plus
Dwil\GK15917-PA 582 GK15917-PA 355..519 40..201 155 25.1 Plus
Dwil\GK15667-PA 374 GK15667-PA 169..358 1..189 153 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14243-PA 263 GE14243-PA 1..263 1..263 1391 98.5 Plus
Dyak\GE14335-PA 260 GE14335-PA 33..173 39..177 174 26.9 Plus