Clone RE31310 Report

Search the DGRC for RE31310

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:313
Well:10
Vector:pFlc-1
Associated Gene/Transcriptmthl14-RA
Protein status:RE31310.pep: gold
Sequenced Size:2103

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32476 2001-12-14 Blastp of sequenced clone
CG13879 2002-01-01 Sim4 clustering to Release 2
CG32476 2003-01-01 Sim4 clustering to Release 3
mthl14 2008-04-29 Release 5.5 accounting
mthl14 2008-08-15 Release 5.9 accounting
mthl14 2008-12-18 5.12 accounting

Clone Sequence Records

RE31310.complete Sequence

2103 bp (2103 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071287

> RE31310.complete
ATCGTTATCTTATCGCCTGCACAAAGTGATTCCATTGCAGAATTAAAACT
TCTTTTTCGCTAGTATTACTTTATTAATCAAGCTCAGTGGTTGCATTTTA
AATAGCAAGCATAAATTATTTGACATATTGGTTGAAAAGGCAATATGAAT
CTAGGCCACTGGAATTTTCTCCTAGCTCTAATCAGTTTACAAACGTTTTT
TAACGCCTCCGCACAGATAAGCACTGTAAATAACAGTTCGAAGGGATCAA
ACAACTCAAATATTTTCCATGAAGACACATTCAATAGCACTTCGATTGAC
GTTCTGGACGCCTCAATACATTCAACACTGGTTGTACCTCAAACATATTC
GACAGAAGCTGCAACAATATCAGGTGCTAGGTTCGCAACCTCTGTTCCTG
TTCAAAGTCCTGTAGACAACCCGTTAGATCCGGCGGACTGTTCTCAACGG
GAAAAGTACAGAAAGCAACCAGTTGCAACACCATCGTCTCGTTTAAGAAA
ATGCTGCCCACATGGAGAAAACTTAAATATATATCGGGAAAATCAAAGCG
ATTCGATGTGCGACAACGGGCTCTTAAGCTTCGAACCGACTATAATAAGT
GCAGTTCTGTTCGATAACTGCATTGAAGATTTGGAGGTTGAGACTACGCT
CGACTACGACATTGGAAATCCGTGCAACAGTTCTCTTTTGTACGACGACA
AAGACGATGTTTTCTTTGTTCTGCAAGACGGTTCGTTATTAATCATCGAC
AAATTTGGCAACGAATCATACACTGTGAAGGAACATTATTGCTTGGATAT
TGATAAGTCAGGACACTTGTTTGCCTTTACATGTGTAACCCAAGTGGAAG
AACAAATTGCCTTCGCAAAAGTCGTTTTTGTTGCCGTTCTTATGCTTATA
TCTATGCCCTGCCTGCTATTAGTTAGTTATTTGCACATGACACTTCGTTT
ATTGCGTAACTTGCATGGTCTCTCGCTAAGTTTGATGTCTCTGTGCTTGG
CGTCTGGATACTTTGTGCACTCCGTTGTGCACATCTATGGGATCCCGAAC
CAAGGGTTCATTGGCTACGTCATACAGTTTTGTATTTTAAGTTACTTCTT
CTGGTACTTGTGCATATGCTTCAATGTTCTTTTGAATGTGTGGTACAAGT
TGCCTTGCTGCATTCAATGCTCAAAGAGTTGGGCCACCTTTAATTTTGCG
TGTTACGCTGTTTTTGCCTTTTCCGGACCGGCCACAATAGTTGCACTAAC
TGTTCAAAAAGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCCTAA
CTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACT
ATACTTTTTCTAAGTTTTTTGCTTAACATCATATCGTTCTTCGGATTTCA
ACGTATAAGCGGCTACGCCAAGGCTGAAAAAAACATTCAGGAGCGAAAAT
GCTTGTTTGACCAACAAAAATATGAAGATGTTAAAAAAGACGCTAAATGT
GTCAGCTTACTTGGAATAATAATGGTCGTTAGCTGGCTGCTCGAAATAAT
AACATTTTACTCGGGATCGAATTCAAATTACCTGATACTCTGTGACATGG
TGAATGGACTCCAGGGAGTTTGGGTACTGCTCATTTTTCTAGTCGTGCGC
AGGCGTCGCACAATAATATTAAGGTGGTGGTATGATCGTGGTTCCCACGA
AATTGAAGGCACAGAGCTGCAAGCTCTTAGTAATAGTCCCACATAGATAT
ATAGAATTATAATACAATTACATTACATACGTTCAAATCTGCGATCGCCG
TTAATATTACATTATTTTTTAATTATATTAAATTCTGGTTTATTTGACCT
GTAAAGAATGATGTGCTTATAAGCAAATCAAATTGATGAAAAGAGAAAAA
CATTCGAAAATTGCTGAACAGCTGAACCTGATATCCTTTAATAGAATATA
TGTTGTTGCGGGCCACATTACCGAACCATTTCCCAAACATATTTGTGAAA
ATTTAACTTTGTGTAAATTGTGGTTTATTTAAACTTATATAAATACTATT
AAATATTAAATGTTTGCTGTCACTTATATGGTCATATAAAAAAAAAAAAA
AAA

RE31310.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-RA 2137 mthl14-RA 42..2131 1..2090 10450 100 Plus
Ddip2.e 5268 Ddip2.e 5171..5268 2090..1993 490 100 Minus
Ddip2.d 5985 Ddip2.d 5888..5985 2090..1993 490 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 249664..250260 1491..2087 2985 100 Plus
chr3L 24539361 chr3L 248874..249299 871..1296 2130 100 Plus
chr3L 24539361 chr3L 248157..248576 261..680 2100 100 Plus
chr3L 24539361 chr3L 248629..248822 679..872 970 100 Plus
chr3L 24539361 chr3L 247938..248071 127..260 670 100 Plus
chr3L 24539361 chr3L 247450..247575 1..126 630 100 Plus
chr3L 24539361 chr3L 249486..249605 1371..1490 600 100 Plus
chr3L 24539361 chr3L 249353..249432 1292..1371 400 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 249709..250308 1491..2090 3000 100 Plus
3L 28110227 3L 248919..249344 871..1296 2130 100 Plus
3L 28110227 3L 248202..248621 261..680 2100 100 Plus
3L 28110227 3L 248674..248867 679..872 970 100 Plus
3L 28110227 3L 247983..248116 127..260 670 100 Plus
3L 28110227 3L 247495..247620 1..126 630 100 Plus
3L 28110227 3L 249531..249650 1371..1490 600 100 Plus
3L 28110227 3L 249398..249477 1292..1371 400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 249709..250308 1491..2090 3000 100 Plus
3L 28103327 3L 248919..249344 871..1296 2130 100 Plus
3L 28103327 3L 248202..248621 261..680 2100 100 Plus
3L 28103327 3L 248674..248867 679..872 970 100 Plus
3L 28103327 3L 247983..248116 127..260 670 100 Plus
3L 28103327 3L 247495..247620 1..126 630 100 Plus
3L 28103327 3L 249531..249650 1371..1490 600 100 Plus
3L 28103327 3L 249398..249477 1292..1371 400 100 Plus
Blast to na_te.dros performed 2019-03-16 03:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 799..866 1978..2044 121 68.1 Plus

RE31310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:23:26 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 247450..247575 1..126 100 -> Plus
chr3L 247938..248071 127..260 100 -> Plus
chr3L 248157..248576 261..680 100 -> Plus
chr3L 248631..248820 681..870 100 -> Plus
chr3L 248874..249297 871..1294 100 -> Plus
chr3L 249356..249432 1295..1371 100 -> Plus
chr3L 249487..249605 1372..1490 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:13 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..1602 145..1746 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:12 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..1602 145..1746 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:55 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..1602 145..1746 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:35 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..1602 145..1746 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:36:36 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..1602 145..1746 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:45 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..2087 1..2087 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:12 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..2087 1..2087 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:55 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 5..2091 1..2087 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:36 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 1..2087 1..2087 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:36:36 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 5..2091 1..2087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:26 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
3L 247495..247620 1..126 100 -> Plus
3L 247983..248116 127..260 100 -> Plus
3L 248202..248621 261..680 100 -> Plus
3L 248676..248865 681..870 100 -> Plus
3L 248919..249342 871..1294 100 -> Plus
3L 249401..249477 1295..1371 100 -> Plus
3L 249532..249650 1372..1490 100 -> Plus
3L 249709..250305 1491..2087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:26 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
3L 247495..247620 1..126 100 -> Plus
3L 247983..248116 127..260 100 -> Plus
3L 248202..248621 261..680 100 -> Plus
3L 248676..248865 681..870 100 -> Plus
3L 248919..249342 871..1294 100 -> Plus
3L 249401..249477 1295..1371 100 -> Plus
3L 249532..249650 1372..1490 100 -> Plus
3L 249709..250305 1491..2087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:26 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
3L 247495..247620 1..126 100 -> Plus
3L 247983..248116 127..260 100 -> Plus
3L 248202..248621 261..680 100 -> Plus
3L 248676..248865 681..870 100 -> Plus
3L 248919..249342 871..1294 100 -> Plus
3L 249401..249477 1295..1371 100 -> Plus
3L 249532..249650 1372..1490 100 -> Plus
3L 249709..250305 1491..2087 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:55 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 247495..247620 1..126 100 -> Plus
arm_3L 247983..248116 127..260 100 -> Plus
arm_3L 248202..248621 261..680 100 -> Plus
arm_3L 248676..248865 681..870 100 -> Plus
arm_3L 248919..249342 871..1294 100 -> Plus
arm_3L 249401..249477 1295..1371 100 -> Plus
arm_3L 249532..249650 1372..1490 100 -> Plus
arm_3L 249709..250305 1491..2087 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:15 Download gff for RE31310.complete
Subject Subject Range Query Range Percent Splice Strand
3L 248202..248621 261..680 100 -> Plus
3L 248676..248865 681..870 100 -> Plus
3L 248919..249342 871..1294 100 -> Plus
3L 249401..249477 1295..1371 100 -> Plus
3L 249532..249650 1372..1490 100 -> Plus
3L 249709..250305 1491..2087 100   Plus
3L 247495..247620 1..126 100 -> Plus
3L 247983..248116 127..260 100 -> Plus

RE31310.pep Sequence

Translation from 144 to 1745

> RE31310.pep
MNLGHWNFLLALISLQTFFNASAQISTVNNSSKGSNNSNIFHEDTFNSTS
IDVLDASIHSTLVVPQTYSTEAATISGARFATSVPVQSPVDNPLDPADCS
QREKYRKQPVATPSSRLRKCCPHGENLNIYRENQSDSMCDNGLLSFEPTI
ISAVLFDNCIEDLEVETTLDYDIGNPCNSSLLYDDKDDVFFVLQDGSLLI
IDKFGNESYTVKEHYCLDIDKSGHLFAFTCVTQVEEQIAFAKVVFVAVLM
LISMPCLLLVSYLHMTLRLLRNLHGLSLSLMSLCLASGYFVHSVVHIYGI
PNQGFIGYVIQFCILSYFFWYLCICFNVLLNVWYKLPCCIQCSKSWATFN
FACYAVFAFSGPATIVALTVQKGLPGMPSYFLQGLTESIRDSQRYFIPPV
STILFLSFLLNIISFFGFQRISGYAKAEKNIQERKCLFDQQKYEDVKKDA
KCVSLLGIIMVVSWLLEIITFYSGSNSNYLILCDMVNGLQGVWVLLIFLV
VRRRRTIILRWWYDRGSHEIEGTELQALSNSPT*

RE31310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25040-PA 529 GF25040-PA 4..522 5..528 1891 71.1 Plus
Dana\GF24876-PA 641 GF24876-PA 115..515 117..508 195 22.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14707-PA 529 GG14707-PA 1..529 1..533 2403 87.3 Plus
Dere\GG14666-PA 682 GG14666-PA 220..550 184..508 165 20.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15734-PA 474 GH15734-PA 30..470 96..531 1751 73.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-PA 533 CG32476-PA 1..533 1..533 2802 100 Plus
mth-PE 514 CG6936-PE 91..509 117..533 199 22.7 Plus
mth-PA 514 CG6936-PA 91..509 117..533 199 22.7 Plus
mth-PB 522 CG6936-PB 91..478 117..502 197 23.2 Plus
mthl10-PC 584 CG17061-PC 191..528 188..508 174 20.7 Plus
mthl10-PB 585 CG17061-PB 191..528 188..508 174 20.7 Plus
mthl10-PD 557 CG17061-PD 191..518 188..508 172 20.6 Plus
mthl10-PG 575 CG17061-PG 191..518 188..508 172 20.6 Plus
mthl10-PF 575 CG17061-PF 191..518 188..508 172 20.6 Plus
mthl10-PE 575 CG17061-PE 191..518 188..508 172 20.6 Plus
mthl10-PA 577 CG17061-PA 191..518 188..508 172 20.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12790-PA 502 GI12790-PA 56..498 94..532 1659 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16120-PA 399 GL16120-PA 1..395 138..531 1745 84.8 Plus
Dper\GL16143-PA 596 GL16143-PA 175..587 96..502 153 21.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16933-PA 399 GA16933-PA 1..395 138..531 1752 85.4 Plus
Dpse\GA14305-PA 684 GA14305-PA 153..553 117..508 206 23.3 Plus
Dpse\GA19967-PA 670 GA19967-PA 208..645 96..527 158 20.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14322-PA 534 GM14322-PA 1..534 1..533 2744 96.6 Plus
Dsec\GM23213-PA 482 GM23213-PA 10..337 188..508 161 20.6 Plus
Dsec\GM14281-PA 515 GM14281-PA 69..467 96..491 158 22.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11003-PA 534 GD11003-PA 1..534 1..533 2755 97 Plus
Dsim\mth-PA 515 GD25710-PA 69..467 96..491 160 22.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16090-PA 459 GJ16090-PA 4..455 85..531 1753 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16540-PA 251 GK16540-PA 119..251 408..533 496 72.9 Plus
Dwil\GK16540-PA 251 GK16540-PA 1..122 138..261 486 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21070-PA 558 GE21070-PA 1..558 1..533 2479 87.3 Plus

RE31310.hyp Sequence

Translation from 144 to 1745

> RE31310.hyp
MNLGHWNFLLALISLQTFFNASAQISTVNNSSKGSNNSNIFHEDTFNSTS
IDVLDASIHSTLVVPQTYSTEAATISGARFATSVPVQSPVDNPLDPADCS
QREKYRKQPVATPSSRLRKCCPHGENLNIYRENQSDSMCDNGLLSFEPTI
ISAVLFDNCIEDLEVETTLDYDIGNPCNSSLLYDDKDDVFFVLQDGSLLI
IDKFGNESYTVKEHYCLDIDKSGHLFAFTCVTQVEEQIAFAKVVFVAVLM
LISMPCLLLVSYLHMTLRLLRNLHGLSLSLMSLCLASGYFVHSVVHIYGI
PNQGFIGYVIQFCILSYFFWYLCICFNVLLNVWYKLPCCIQCSKSWATFN
FACYAVFAFSGPATIVALTVQKGLPGMPSYFLQGLTESIRDSQRYFIPPV
STILFLSFLLNIISFFGFQRISGYAKAEKNIQERKCLFDQQKYEDVKKDA
KCVSLLGIIMVVSWLLEIITFYSGSNSNYLILCDMVNGLQGVWVLLIFLV
VRRRRTIILRWWYDRGSHEIEGTELQALSNSPT*

RE31310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-PA 533 CG32476-PA 1..533 1..533 2802 100 Plus
mth-PE 514 CG6936-PE 91..509 117..533 199 22.7 Plus
mth-PA 514 CG6936-PA 91..509 117..533 199 22.7 Plus
mth-PB 522 CG6936-PB 91..478 117..502 197 23.2 Plus
mthl10-PC 584 CG17061-PC 191..528 188..508 174 20.7 Plus