BDGP Sequence Production Resources |
Search the DGRC for RE31380
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 313 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9380-RD |
Protein status: | RE31380.pep: gold |
Preliminary Size: | 1528 |
Sequenced Size: | 2823 |
Gene | Date | Evidence |
---|---|---|
CG9380 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9380 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9380 | 2003-08-12 | Blastp of sequenced clone |
CG9380 | 2008-04-29 | Release 5.5 accounting |
CG9380 | 2008-08-15 | Release 5.9 accounting |
CG9380 | 2008-12-18 | 5.12 accounting |
2823 bp (2823 high quality bases) assembled on 2003-08-12
GenBank Submission: BT011094
> RE31380.complete AGAGGTGTAGTTGGTCAGAAAATGAAACACTCAGTTCAAGCGAGACAGCT GGTAAAACAAGTTACCACGACGAAAACGAGAACCCTAACCATGAAATTGC AACAACTTTTGGCAGCAGTTTGCTGTCTAGCTGCTGCCCTTATCCTGAAA ACTAAGGCACAAGAAAATGCTATGTTGCAAATTCCGCCCTCATTGGTGGA GTGTTATAATACGTCATACTTTATGAATCGGGATAATCGTCTACCAGCCA ACATGGACACGCTCATTTCTCTTATCGAAAAAGTAGAAAACAGCTACGCA GCTAGTTCAGGAGTACAAGCCGATATTCGAACCGTGTCGGTAGCCTTGCT GCATCGTTTCCGTCAAGATGGCATTAAGAAGGCTGCGGGAATAAATGTGG CTGACGGGGTAATACCGTACAGTCCAACAGGCTTTCAGTTTCCAAAGTTA AAAATTTTGCTCTCACGTCTTATTCCGGGAAACGCCAATACCTTTCCTAA CAGTTCATTGACGAGAGTGGAGCGGTGCTCCCTCCATTTTATGCTATCAA GCACCTTTGACACAAGAACGCGCGGCGATGAAAACAATGTGTGCAATCAA CTCTCTCAGTATCGAGCCCAGCGACTGCCGAGATCATTAAAAAAGGAGCA TGAAAATAATTTTATAAGCGCTTCTGAATGGCTGGAGGCACGCTCGAAAC GAGGACGATCTTCCGACTCCGTATCAAAATACGAACAATTGGGAGAATTG GACTACGAATCCGACTGGGCTTATGCCGGCCCTGAGACTAGCCAATGCCC TGTCGAGGATGGCCTAGTACGAACACGTTGGGGAACGATATCTGGAGGGA CTCTGATCGCCGGCATTGCAGCTGGTGTCCAGCAGCAGACTGTGCAACTT AATACGCTATTGACCCTGGCTTCCCAGCGACGCGCTCGTGGTCGTAGTCA GTCCCAGACAAGCAATACAATTGACAACAGGTGGGCGGCAACTTTGGCTG GGGAGTTGGCGGAAGTCACGTTGGTCCAACTACCAGTGTCGAATGGCAAT CCCGCTTCCGTTGGGGCTACCGGTGGATGGAATGACACAGTTCTACCCCA TTGGTACTTCCTATCGCAGCGCAACAACCTTGAGGCAACCGATGCGGAGA TTCGCGGTGGCCTTGATGGTTTAATTTTGGCTAAAAATGTAGCCAGTTGG AGGACTCAAGCACCGAGCCTTAAACTTTCTCAACTGCTGCGCATGTATTA CTCAACAAATGGTGTCCTTAGTTCAGGGATCAATGCCTGCAGTAGGCAAA ATCAATTCACAAATGTGGCTCCGTCTCAGGAAATGGAGGATCAGACAAAT GCGTTTGCTCTAATATTAGATCGTGAGATGCAGCTGCGTGTCACCCTCCA GCCTTCCCTTATTTCCCAATTTGCTGGTAACGCCACCGCATCTCTGGTGA CGTATGTGCCACAATCGTTAAACGATGTATCTTGTATGGCTACTAGTAAT CTTGACTTGACTGATGCCATAACTCCAATGACTAACCTGTATCTTTTTTT GGATACTTCTTGGCAATACAGCACCATTGTTGACTATATAGCTTATGTTA TACAGCAGCTTAATATTCACCCGTATGCCAGCACAATCACAATGCTTTCA GCACAAGATGGTTCGATTATCGTAAACACCACAAACTATATTACCGATGT CTATCAACAATGGAATGCAACTACACAGGCAACTTATACTCAGGGATTCA ACCTTCCTAATGTGCTGCGTACAATTCAAAACCTAACCCAGTACTTAATG AATGAAGAAAAGACTAATTCGAGCTTAAGTGGTCACTCACTAGTAGCTCT AATCATTCCGAATCAGCAAACCATTAATGATGGAGACTCCAGTTATGCCA CTACTGAAATTCAGTACATTCAGGAACAAATTCCAGACCTGCGTTTTATA TACTATGGTGGTGGAAGCATTCAGCGGTTTTCAAGCTTTGTCCGAGATCC CACTCAAGACCTTTTCTCCCTAACGTTGGGAAGTACACCGGCGACTTCAG CGGGACCCGTAGCAAAGCGCATTGTCCAAATTCCCCGTCGCGTTATTAAT CCACGTTGTGGATCAACTTGGTACACAAATAGCTGGGGTACTGATCAAAC AGCCCAATATGTAGGGCCTGGAAAGGTGAACTTTTATCGAGTTTCTTCTA ACTATTTCTTTGGAGCTGGTGCGAATCGCTATTTGACCATTCAATCACAG AATGGAGGAACTTATACCATATGTACTTCACGCACATATGCATGGCCGCA ACAGAACTCAACTACTCTTTCTACGACAAACTCGATAGATCAGAGTTGCA CACAAATAAGTGGAAATAGTTTTAGCTACGATCTTTCAAATGCCTGCGAG GGCTACTATACTATCACCCAGTGTCCAGACTTGTATTTGTCAGTCCAAGC TACATCAAACACCACGTCCTGTATACAGGATGCTTGCCAGACCCCTGATC AATGGCGTTATATAATGTCAATGGTCAACATGGGATGCTACAGCGGTGTC TCGGGTATAGCAGCCAGTTTGTTAATAATTGTATTCGCAATATTAGCTCT CAGGCTAATTTAATGATTGGCAACTAGTGCGTGGTAATATTAGGATACTG CCGCAGATTTTAATCTTAAGTTTCCTTACAAAAATAACTATTTTTTTGTT TTACATTTATGTTTTATTTTTTCGTAATTAATGATATGCTTTAATAAACA ACCCTACTTCAATTTCCTAAATATAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 21072747..21074146 | 1459..60 | 6955 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 21071047..21071684 | 2774..2137 | 3160 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 21071853..21072197 | 2080..1736 | 1680 | 99.1 | Minus |
chr2R | 21145070 | chr2R | 21072249..21072391 | 1735..1593 | 715 | 100 | Minus |
chr2R | 21145070 | chr2R | 21072457..21072596 | 1599..1460 | 655 | 97.9 | Minus |
chr2R | 21145070 | chr2R | 21071738..21071797 | 2140..2081 | 300 | 100 | Minus |
chr2R | 21145070 | chr2R | 21074693..21074751 | 61..3 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 25186826..25188225 | 1459..60 | 7000 | 100 | Minus |
2R | 25286936 | 2R | 25185124..25185763 | 2776..2137 | 3200 | 100 | Minus |
2R | 25286936 | 2R | 25185932..25186276 | 2080..1736 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 25186328..25186470 | 1735..1593 | 715 | 100 | Minus |
2R | 25286936 | 2R | 25186536..25186675 | 1599..1460 | 670 | 98.6 | Minus |
2R | 25286936 | 2R | 25185817..25185876 | 2140..2081 | 300 | 100 | Minus |
2R | 25286936 | 2R | 25188777..25188835 | 61..3 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 25188025..25189424 | 1459..60 | 7000 | 100 | Minus |
2R | 25260384 | 2R | 25186323..25186962 | 2776..2137 | 3200 | 100 | Minus |
2R | 25260384 | 2R | 25187131..25187475 | 2080..1736 | 1725 | 100 | Minus |
2R | 25260384 | 2R | 25187527..25187669 | 1735..1593 | 715 | 100 | Minus |
2R | 25260384 | 2R | 25187735..25187874 | 1599..1460 | 670 | 98.5 | Minus |
2R | 25260384 | 2R | 25187016..25187075 | 2140..2081 | 300 | 100 | Minus |
2R | 25260384 | 2R | 25189976..25190034 | 61..3 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3687..3887 | 2764..2578 | 134 | 57.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 21072249..21072391 | 1593..1735 | 100 | <- | Minus |
chr2R | 21072464..21072596 | 1460..1592 | 99 | <- | Minus |
chr2R | 21071741..21071797 | 2081..2137 | 100 | <- | Minus |
chr2R | 21071853..21072197 | 1736..2080 | 99 | <- | Minus |
chr2R | 21071047..21071683 | 2138..2774 | 99 | <- | Minus |
chr2R | 21072747..21074144 | 62..1459 | 99 | <- | Minus |
chr2R | 21074693..21074753 | 1..61 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RB | 1..2592 | 22..2613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RB | 1..2592 | 22..2613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RF | 1..2523 | 91..2613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RB | 1..2592 | 22..2613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RF | 1..2523 | 91..2613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RB | 1..2774 | 1..2774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RB | 1..2774 | 1..2774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RD | 1..2745 | 30..2774 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RB | 1..2774 | 1..2774 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9380-RD | 1..2745 | 30..2774 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 25185126..25185762 | 2138..2774 | 100 | <- | Minus |
2R | 25185820..25185876 | 2081..2137 | 100 | <- | Minus |
2R | 25185932..25186276 | 1736..2080 | 100 | <- | Minus |
2R | 25186328..25186470 | 1593..1735 | 100 | <- | Minus |
2R | 25186543..25186675 | 1460..1592 | 100 | <- | Minus |
2R | 25186826..25188223 | 62..1459 | 100 | <- | Minus |
2R | 25188777..25188837 | 1..61 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 25185126..25185762 | 2138..2774 | 100 | <- | Minus |
2R | 25185820..25185876 | 2081..2137 | 100 | <- | Minus |
2R | 25185932..25186276 | 1736..2080 | 100 | <- | Minus |
2R | 25186328..25186470 | 1593..1735 | 100 | <- | Minus |
2R | 25186543..25186675 | 1460..1592 | 100 | <- | Minus |
2R | 25186826..25188223 | 62..1459 | 100 | <- | Minus |
2R | 25188777..25188837 | 1..61 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 25185126..25185762 | 2138..2774 | 100 | <- | Minus |
2R | 25185820..25185876 | 2081..2137 | 100 | <- | Minus |
2R | 25185932..25186276 | 1736..2080 | 100 | <- | Minus |
2R | 25186328..25186470 | 1593..1735 | 100 | <- | Minus |
2R | 25186543..25186675 | 1460..1592 | 100 | <- | Minus |
2R | 25186826..25188223 | 62..1459 | 100 | <- | Minus |
2R | 25188777..25188837 | 1..61 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 21072649..21073285 | 2138..2774 | 100 | <- | Minus |
arm_2R | 21073343..21073399 | 2081..2137 | 100 | <- | Minus |
arm_2R | 21073455..21073799 | 1736..2080 | 100 | <- | Minus |
arm_2R | 21073851..21073993 | 1593..1735 | 100 | <- | Minus |
arm_2R | 21074066..21074198 | 1460..1592 | 100 | <- | Minus |
arm_2R | 21074349..21075746 | 62..1459 | 100 | <- | Minus |
arm_2R | 21076300..21076360 | 1..61 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 25187545..25187687 | 1593..1735 | 100 | <- | Minus |
2R | 25187760..25187892 | 1460..1592 | 100 | <- | Minus |
2R | 25187149..25187493 | 1736..2080 | 100 | <- | Minus |
2R | 25186343..25186979 | 2138..2774 | 100 | <- | Minus |
2R | 25187037..25187093 | 2081..2137 | 100 | <- | Minus |
2R | 25188043..25189440 | 62..1459 | 100 | <- | Minus |
2R | 25189994..25190054 | 1..61 | 98 | Minus |
Translation from 0 to 2612
> RE31380.hyp TGVVGQKMKHSVQARQLVKQVTTTKTRTLTMKLQQLLAAVCCLAAALILK TKAQENAMLQIPPSLVECYNTSYFMNRDNRLPANMDTLISLIEKVENSYA ASSGVQADIRTVSVALLHRFRQDGIKKAAGINVADGVIPYSPTGFQFPKL KILLSRLIPGNANTFPNSSLTRVERCSLHFMLSSTFDTRTRGDENNVCNQ LSQYRAQRLPRSLKKEHENNFISASEWLEARSKRGRSSDSVSKYEQLGEL DYESDWAYAGPETSQCPVEDGLVRTRWGTISGGTLIAGIAAGVQQQTVQL NTLLTLASQRRARGRSQSQTSNTIDNRWAATLAGELAEVTLVQLPVSNGN PASVGATGGWNDTVLPHWYFLSQRNNLEATDAEIRGGLDGLILAKNVASW RTQAPSLKLSQLLRMYYSTNGVLSSGINACSRQNQFTNVAPSQEMEDQTN AFALILDREMQLRVTLQPSLISQFAGNATASLVTYVPQSLNDVSCMATSN LDLTDAITPMTNLYLFLDTSWQYSTIVDYIAYVIQQLNIHPYASTITMLS AQDGSIIVNTTNYITDVYQQWNATTQATYTQGFNLPNVLRTIQNLTQYLM NEEKTNSSLSGHSLVALIIPNQQTINDGDSSYATTEIQYIQEQIPDLRFI YYGGGSIQRFSSFVRDPTQDLFSLTLGSTPATSAGPVAKRIVQIPRRVIN PRCGSTWYTNSWGTDQTAQYVGPGKVNFYRVSSNYFFGAGANRYLTIQSQ NGGTYTICTSRTYAWPQQNSTTLSTTNSIDQSCTQISGNSFSYDLSNACE GYYTITQCPDLYLSVQATSNTTSCIQDACQTPDQWRYIMSMVNMGCYSGV SGIAASLLIIVFAILALRLI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9380-PE | 840 | CG9380-PE | 1..840 | 31..870 | 4333 | 100 | Plus |
CG9380-PD | 840 | CG9380-PD | 1..840 | 31..870 | 4333 | 100 | Plus |
CG9380-PF | 840 | CG9380-PF | 1..840 | 31..870 | 4333 | 100 | Plus |
CG9380-PG | 850 | CG9380-PG | 1..831 | 31..866 | 3046 | 72 | Plus |
Translation from 21 to 2612
> RE31380.pep MKHSVQARQLVKQVTTTKTRTLTMKLQQLLAAVCCLAAALILKTKAQENA MLQIPPSLVECYNTSYFMNRDNRLPANMDTLISLIEKVENSYAASSGVQA DIRTVSVALLHRFRQDGIKKAAGINVADGVIPYSPTGFQFPKLKILLSRL IPGNANTFPNSSLTRVERCSLHFMLSSTFDTRTRGDENNVCNQLSQYRAQ RLPRSLKKEHENNFISASEWLEARSKRGRSSDSVSKYEQLGELDYESDWA YAGPETSQCPVEDGLVRTRWGTISGGTLIAGIAAGVQQQTVQLNTLLTLA SQRRARGRSQSQTSNTIDNRWAATLAGELAEVTLVQLPVSNGNPASVGAT GGWNDTVLPHWYFLSQRNNLEATDAEIRGGLDGLILAKNVASWRTQAPSL KLSQLLRMYYSTNGVLSSGINACSRQNQFTNVAPSQEMEDQTNAFALILD REMQLRVTLQPSLISQFAGNATASLVTYVPQSLNDVSCMATSNLDLTDAI TPMTNLYLFLDTSWQYSTIVDYIAYVIQQLNIHPYASTITMLSAQDGSII VNTTNYITDVYQQWNATTQATYTQGFNLPNVLRTIQNLTQYLMNEEKTNS SLSGHSLVALIIPNQQTINDGDSSYATTEIQYIQEQIPDLRFIYYGGGSI QRFSSFVRDPTQDLFSLTLGSTPATSAGPVAKRIVQIPRRVINPRCGSTW YTNSWGTDQTAQYVGPGKVNFYRVSSNYFFGAGANRYLTIQSQNGGTYTI CTSRTYAWPQQNSTTLSTTNSIDQSCTQISGNSFSYDLSNACEGYYTITQ CPDLYLSVQATSNTTSCIQDACQTPDQWRYIMSMVNMGCYSGVSGIAASL LIIVFAILALRLI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11504-PA | 830 | GF11504-PA | 1..829 | 24..863 | 3562 | 78.4 | Plus |
Dana\GF11505-PA | 372 | GF11505-PA | 11..364 | 495..862 | 697 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19856-PA | 812 | GG19856-PA | 1..811 | 51..863 | 4081 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23130-PA | 887 | GH23130-PA | 37..874 | 31..851 | 3207 | 72.6 | Plus |
Dgri\GH23131-PA | 295 | GH23131-PA | 3..290 | 572..860 | 526 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9380-PE | 840 | CG9380-PE | 1..840 | 24..863 | 4333 | 100 | Plus |
CG9380-PD | 840 | CG9380-PD | 1..840 | 24..863 | 4333 | 100 | Plus |
CG9380-PF | 840 | CG9380-PF | 1..840 | 24..863 | 4333 | 100 | Plus |
CG9380-PG | 850 | CG9380-PG | 1..831 | 24..859 | 3046 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18471-PA | 781 | GI18471-PA | 1..762 | 78..845 | 3136 | 76 | Plus |
Dmoj\GI18472-PA | 377 | GI18472-PA | 11..374 | 495..860 | 761 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16825-PA | 1209 | GL16825-PA | 7..832 | 30..851 | 3641 | 82.7 | Plus |
Dper\GL16825-PA | 1209 | GL16825-PA | 842..1207 | 495..861 | 777 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21745-PB | 845 | GA21745-PB | 7..844 | 30..863 | 3688 | 82.4 | Plus |
Dpse\GA21745-PC | 816 | GA21745-PC | 7..811 | 30..853 | 2629 | 61.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11760-PA | 747 | GM11760-PA | 1..706 | 1..706 | 3688 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24892-PA | 864 | GD24892-PA | 1..863 | 1..863 | 4520 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21327-PA | 841 | GJ21327-PA | 1..830 | 24..853 | 3447 | 77.6 | Plus |
Dvir\GJ21328-PA | 376 | GJ21328-PA | 11..368 | 495..853 | 768 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21722-PA | 989 | GK21722-PA | 142..983 | 20..858 | 3514 | 78.6 | Plus |
Dwil\GK21723-PA | 378 | GK21723-PA | 11..373 | 495..859 | 760 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11380-PA | 841 | GE11380-PA | 1..840 | 24..863 | 4193 | 94.6 | Plus |