BDGP Sequence Production Resources |
Search the DGRC for RE31408
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 314 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cpsf73-RA |
Protein status: | RE31408.pep: gold |
Preliminary Size: | 2118 |
Sequenced Size: | 2182 |
Gene | Date | Evidence |
---|---|---|
CG7698 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7698 | 2002-05-18 | Blastp of sequenced clone |
CG7698 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7698 | 2008-04-29 | Release 5.5 accounting |
CG7698 | 2008-08-15 | Release 5.9 accounting |
CG7698 | 2008-12-18 | 5.12 accounting |
2182 bp (2182 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119128
> RE31408.complete ACTGCCGTGCACAGCGTTTTGTTGCCGGCGATTTGTAAAAAAGTTTGTTA TTGATTACATTATTTTAGACATCATGACGCAGGCAACAGGTGATGCACGC ATGCCAGACGAGGAAAGCGACCTGCTGCAGATCAAGCCACTTGGTGCTGG CCAGGAAGTGGGACGCTCCTGCATCATGTTGGAATTTAAGGGCAAGAAGA TAATGCTGGACTGCGGAATCCATCCGGGATTGTCCGGCATGGATGCCCTG CCCTACGTAGATCTAATAGAGGCGGATGAGATTGATCTGCTGTTTATATC ACATTTCCACTTGGATCACTGCGGTGCCTTGCCTTGGTTTCTCATGAAGA CCAGCTTTAAAGGCCGCTGCTTTATGACCCATGCCACGAAAGCCATTTAC CGATGGATGCTGTCCGATTACATCAAGATCAGTAACATATCCACCGAACA GATGCTATACACGGAAGCCGATCTGGAGGCCTCCATGGAGAAGATCGAGA CGATCAATTTCCACGAGGAGCGCGATGTGATGGGCGTACGCTTTTGTGCC TATATTGCTGGTCATGTTTTGGGTGCCGCCATGTTCATGATCGAGATTGC TGGCATCAAGATCTTGTATACTGGTGACTTTTCGCGCCAGGAGGATCGAC ATTTGATGGCTGCCGAAGTGCCACCGATGAAGCCGGATGTTCTTATCACA GAGTCCACCTACGGCACTCACATTCACGAGAAAAGAGAGGATCGAGAGAA TCGATTTACCTCGCTGGTGCAGAAAATTGTTCAGCAAGGCGGGAGATGCT TAATTCCAGTATTTGCTTTGGGCCGTGCCCAAGAACTGCTACTTATTCTG GATGAATTCTGGTCGCAGAACCCGGATCTGCACGAGATTCCCATCTACTA TGCCTCCTCTTTGGCCAAGAAGTGCATGGCTGTCTACCAGACGTACATCA ATGCTATGAACGATCGAATTCGACGACAGATAGCTGTGAACAATCCCTTC GTTTTCCGCCACATTTCCAACCTGAAGGGTATCGATCACTTCGAGGATAT CGGACCCTGCGTAATCATGGCGTCGCCGGGTATGATGCAGTCGGGATTGT CGCGAGAGCTCTTCGAGAGCTGGTGCACAGATCCCAAGAACGGAGTGATT ATAGCCGGTTACTGCGTGGAGGGCACTTTGGCCAAAGCCGTTCTCTCCGA GCCGGAGGAGATCACCACACTGTCGGGCCAGAAGCTGCCGCTCAACATGT CCGTCGACTACATATCGTTTTCGGCTCACACGGACTACCAGCAGACCAGT GAATTCATCCGCCTACTAAAGCCAACGCATGTCGTGCTCGTCCACGGCGA GCAGAACGAGATGTCGCGTCTGAAGTTGGCCCTGCAGCGGGAATACGAAG CAGATGCAAGCACGGATATAAAATTCTACAACCCGCGAAACACACATGCC GTGGATCTTTATTTCCGTGGCGAGAAAACCGCCAAGGTGATGGGAAGCCT CGCAGCCAAGAACTCGGAGGTGGGAAGCAAACTCTCAGGTGTTCTGGTTA AGCGCGACTTTAAGTACCACCTCTTGGCTCCTTCTGATCTGGGCAAATAC ACGGATATGAGCATGTCTGTTGTAACCCAACGCCAGTCGATTCCCTGGGG CAGCTCGCTGAGCACTCTAGAGCTACTGCTGGATCGCATTGGAGCCGGAT GCGTTGAGGTGCTGGAGGCGGAGCGAAAGCTGCGCGTGTTCGGCTGCATC GAGCTAACTGTGGAGCAGAAAATCATTGTGATGGAGTGGCAAGCGACGCA TGTGAATGATGTGTACGCCGATGCCGTTCTTGCCTGCATCATGCAATCGG AGTTGGGCGGAACAAATCTGAAGGGTGCCACAAAGCAAACCAAGTCAGAG GACTCGCGCTTTCGGGAGTGCCTAATCGAGACGCTACAGGACACCTTCGG CGACAACTGCGTGCCAAAAATGTTCGAGGGCGATCTGCTGCCAGTGACGG TGAGCGGTAAACGTGCGGAAATAAATCTGGAAACCCTGGCCATCAGCTGT GCCGAGGATGATGTGCTGCGACAAATGCTCAATACGACGGTTCAGAAGTT ACACCAGACCCTAGTCTCCGCTCTTTGAAAACCATTCTATTCCGCTTAAT AAATCTCCTTGTGTCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14485939..14487230 | 1595..304 | 6415 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 14485434..14485877 | 2039..1596 | 2145 | 98.9 | Minus |
chr3R | 27901430 | chr3R | 14487293..14487454 | 303..142 | 810 | 100 | Minus |
chr3R | 27901430 | chr3R | 14487511..14487651 | 141..1 | 705 | 100 | Minus |
chr3R | 27901430 | chr3R | 14485246..14485372 | 2164..2038 | 620 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18661816..18663107 | 1595..304 | 6460 | 100 | Minus |
3R | 32079331 | 3R | 18661311..18661754 | 2039..1596 | 2220 | 100 | Minus |
3R | 32079331 | 3R | 18663170..18663331 | 303..142 | 810 | 100 | Minus |
3R | 32079331 | 3R | 18663388..18663528 | 141..1 | 705 | 100 | Minus |
3R | 32079331 | 3R | 18661118..18661249 | 2169..2038 | 645 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18402647..18403938 | 1595..304 | 6460 | 100 | Minus |
3R | 31820162 | 3R | 18402142..18402585 | 2039..1596 | 2220 | 100 | Minus |
3R | 31820162 | 3R | 18404001..18404162 | 303..142 | 810 | 100 | Minus |
3R | 31820162 | 3R | 18404219..18404359 | 141..1 | 705 | 100 | Minus |
3R | 31820162 | 3R | 18401949..18402080 | 2169..2038 | 645 | 99.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14487511..14487651 | 1..141 | 100 | Minus | |
chr3R | 14485244..14485371 | 2039..2166 | 98 | <- | Minus |
chr3R | 14485435..14485877 | 1596..2038 | 98 | <- | Minus |
chr3R | 14485939..14487230 | 304..1595 | 99 | <- | Minus |
chr3R | 14487293..14487454 | 142..303 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7698-RA | 1..2055 | 74..2128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpsf73-RA | 1..2055 | 74..2128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpsf73-RA | 1..2055 | 74..2128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7698-RA | 1..2055 | 74..2128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpsf73-RA | 1..2055 | 74..2128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7698-RA | 1..2166 | 1..2166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpsf73-RA | 1..2166 | 1..2166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpsf73-RA | 1..2166 | 1..2166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7698-RA | 1..2166 | 1..2166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpsf73-RA | 25..2190 | 1..2166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18661121..18661248 | 2039..2166 | 99 | <- | Minus |
3R | 18661312..18661754 | 1596..2038 | 100 | <- | Minus |
3R | 18661816..18663107 | 304..1595 | 100 | <- | Minus |
3R | 18663170..18663331 | 142..303 | 100 | <- | Minus |
3R | 18663388..18663528 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18661121..18661248 | 2039..2166 | 99 | <- | Minus |
3R | 18661312..18661754 | 1596..2038 | 100 | <- | Minus |
3R | 18661816..18663107 | 304..1595 | 100 | <- | Minus |
3R | 18663170..18663331 | 142..303 | 100 | <- | Minus |
3R | 18663388..18663528 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18661121..18661248 | 2039..2166 | 99 | <- | Minus |
3R | 18661312..18661754 | 1596..2038 | 100 | <- | Minus |
3R | 18661816..18663107 | 304..1595 | 100 | <- | Minus |
3R | 18663170..18663331 | 142..303 | 100 | <- | Minus |
3R | 18663388..18663528 | 1..141 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14489110..14489250 | 1..141 | 100 | Minus | |
arm_3R | 14488892..14489053 | 142..303 | 100 | <- | Minus |
arm_3R | 14486843..14486970 | 2039..2166 | 99 | <- | Minus |
arm_3R | 14487034..14487476 | 1596..2038 | 100 | <- | Minus |
arm_3R | 14487538..14488829 | 304..1595 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18402143..18402585 | 1596..2038 | 100 | <- | Minus |
3R | 18402647..18403938 | 304..1595 | 100 | <- | Minus |
3R | 18404001..18404162 | 142..303 | 100 | <- | Minus |
3R | 18404219..18404359 | 1..141 | 100 | Minus | |
3R | 18401952..18402079 | 2039..2166 | 99 | <- | Minus |
Translation from 0 to 2127
> RE31408.hyp LPCTAFCCRRFVKKFVIDYIILDIMTQATGDARMPDEESDLLQIKPLGAG QEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLLFIS HFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQ MLYTEADLEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIA GIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDREN RFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYY ASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDI GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVLSE PEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGE QNEMSRLKLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSL AAKNSEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQRQSIPWG SSLSTLELLLDRIGAGCVEVLEAERKLRVFGCIELTVEQKIIVMEWQATH VNDVYADAVLACIMQSELGGTNLKGATKQTKSEDSRFRECLIETLQDTFG DNCVPKMFEGDLLPVTVSGKRAEINLETLAISCAEDDVLRQMLNTTVQKL HQTLVSAL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cpsf73-PA | 684 | CG7698-PA | 1..684 | 25..708 | 3540 | 100 | Plus |
IntS11-PA | 597 | CG1972-PA | 1..440 | 34..480 | 817 | 38.8 | Plus |
Cpsf100-PA | 756 | CG1957-PA | 2..366 | 39..394 | 301 | 24.4 | Plus |
IntS9-PA | 654 | CG5222-PA | 9..471 | 52..446 | 205 | 20.7 | Plus |
Translation from 73 to 2127
> RE31408.pep MTQATGDARMPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIH PGLSGMDALPYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCF MTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEASMEKIETINFHEER DVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVP PMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALG RAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIR RQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESW CTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFS AHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIK FYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHL LAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGCVEVLEAE RKLRVFGCIELTVEQKIIVMEWQATHVNDVYADAVLACIMQSELGGTNLK GATKQTKSEDSRFRECLIETLQDTFGDNCVPKMFEGDLLPVTVSGKRAEI NLETLAISCAEDDVLRQMLNTTVQKLHQTLVSAL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18101-PA | 684 | GF18101-PA | 1..683 | 1..683 | 3590 | 96.6 | Plus |
Dana\GF23370-PA | 597 | GF23370-PA | 1..440 | 10..456 | 844 | 39.2 | Plus |
Dana\GF16269-PA | 756 | GF16269-PA | 2..366 | 15..370 | 309 | 23.8 | Plus |
Dana\GF10658-PA | 655 | GF10658-PA | 9..471 | 28..422 | 221 | 21.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16362-PA | 684 | GG16362-PA | 1..684 | 1..684 | 3676 | 99 | Plus |
Dere\GG11690-PA | 597 | GG11690-PA | 1..440 | 10..456 | 840 | 39 | Plus |
Dere\GG11633-PA | 756 | GG11633-PA | 2..366 | 15..370 | 312 | 24.1 | Plus |
Dere\GG13497-PA | 654 | GG13497-PA | 9..471 | 28..422 | 218 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19212-PA | 686 | GH19212-PA | 5..685 | 3..683 | 3451 | 93.8 | Plus |
Dgri\GH14325-PA | 597 | GH14325-PA | 1..440 | 10..456 | 839 | 39 | Plus |
Dgri\GH10247-PA | 754 | GH10247-PA | 2..383 | 15..392 | 305 | 23 | Plus |
Dgri\GH14706-PA | 657 | GH14706-PA | 9..471 | 28..422 | 208 | 20.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cpsf73-PA | 684 | CG7698-PA | 1..684 | 1..684 | 3540 | 100 | Plus |
IntS11-PA | 597 | CG1972-PA | 1..440 | 10..456 | 817 | 38.8 | Plus |
Cpsf100-PA | 756 | CG1957-PA | 2..366 | 15..370 | 301 | 24.4 | Plus |
IntS9-PA | 654 | CG5222-PA | 9..471 | 28..422 | 205 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24246-PA | 686 | GI24246-PA | 5..684 | 3..682 | 3507 | 94 | Plus |
Dmoj\GI10422-PA | 597 | GI10422-PA | 1..440 | 10..456 | 849 | 39.4 | Plus |
Dmoj\GI23051-PA | 754 | GI23051-PA | 2..366 | 15..370 | 308 | 23.6 | Plus |
Dmoj\GI12252-PA | 659 | GI12252-PA | 9..471 | 28..422 | 219 | 21 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23169-PA | 684 | GL23169-PA | 1..683 | 1..683 | 3562 | 95.9 | Plus |
Dper\GL23717-PA | 597 | GL23717-PA | 1..440 | 10..456 | 839 | 39 | Plus |
Dper\GL25097-PA | 657 | GL25097-PA | 9..471 | 28..422 | 213 | 21 | Plus |
Dper\GL24248-PA | 583 | GL24248-PA | 1..192 | 185..370 | 205 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20526-PA | 684 | GA20526-PA | 1..683 | 1..683 | 3570 | 96.2 | Plus |
Dpse\GA15164-PA | 597 | GA15164-PA | 1..440 | 10..456 | 839 | 39 | Plus |
Dpse\GA26549-PA | 731 | GA26549-PA | 2..366 | 15..370 | 300 | 23.8 | Plus |
Dpse\GA18747-PA | 657 | GA18747-PA | 9..471 | 28..422 | 213 | 21 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18692-PA | 684 | GM18692-PA | 1..684 | 1..684 | 3684 | 99.7 | Plus |
Dsec\GM12816-PA | 597 | GM12816-PA | 1..440 | 10..456 | 843 | 39 | Plus |
Dsec\GM12754-PA | 743 | GM12754-PA | 2..366 | 15..370 | 313 | 24.1 | Plus |
Dsec\GM24446-PA | 654 | GM24446-PA | 9..471 | 28..422 | 216 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20157-PA | 684 | GD20157-PA | 1..684 | 1..684 | 3685 | 99.7 | Plus |
Dsim\GD21460-PA | 597 | GD21460-PA | 1..440 | 10..456 | 843 | 39 | Plus |
Dsim\GD21403-PA | 664 | GD21403-PA | 21..274 | 128..370 | 276 | 26 | Plus |
Dsim\GD12515-PA | 654 | GD12515-PA | 9..471 | 28..422 | 215 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10819-PA | 686 | GJ10819-PA | 5..685 | 3..683 | 3507 | 94.3 | Plus |
Dvir\GJ10637-PA | 597 | GJ10637-PA | 1..440 | 10..456 | 851 | 39.4 | Plus |
Dvir\GJ24636-PA | 693 | GJ24636-PA | 2..366 | 15..370 | 307 | 23.8 | Plus |
Dvir\GJ11484-PA | 658 | GJ11484-PA | 9..471 | 28..422 | 220 | 21 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13096-PA | 684 | GK13096-PA | 1..684 | 1..684 | 3453 | 93.3 | Plus |
Dwil\GK11920-PA | 597 | GK11920-PA | 1..440 | 10..456 | 838 | 39 | Plus |
Dwil\GK22564-PA | 757 | GK22564-PA | 2..383 | 15..392 | 327 | 24.6 | Plus |
Dwil\GK23916-PA | 659 | GK23916-PA | 9..471 | 28..422 | 215 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25184-PA | 684 | GE25184-PA | 1..684 | 1..684 | 3684 | 99.4 | Plus |
Dyak\GE23879-PA | 597 | GE23879-PA | 1..440 | 10..456 | 839 | 39 | Plus |
Dyak\GE26465-PA | 756 | GE23822-PA | 2..366 | 15..370 | 313 | 24.1 | Plus |
Dyak\GE26465-PB | 548 | GE26465-PB | 2..366 | 15..370 | 311 | 24.1 | Plus |
Dyak\GE19796-PA | 654 | GE19796-PA | 9..471 | 28..422 | 215 | 20.7 | Plus |