BDGP Sequence Production Resources |
Search the DGRC for RE31673
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 316 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mmy-RB |
Protein status: | RE31673.pep: gold |
Sequenced Size: | 1934 |
Gene | Date | Evidence |
---|---|---|
CG9535 | 2002-10-12 | Blastp of sequenced clone |
CG9535 | 2003-01-01 | Sim4 clustering to Release 3 |
mmy | 2008-04-29 | Release 5.5 accounting |
mmy | 2008-08-15 | Release 5.9 accounting |
mmy | 2008-12-18 | 5.12 accounting |
1934 bp (1934 high quality bases) assembled on 2002-10-12
GenBank Submission: BT001608
> RE31673.complete GGTTGCGCTTTGGTTACCACGTATAGCGGAACGCAACAAAGCCCGGACAA CCCGACCACTGTCTTTTTACCGCATTCGCCAAATAATCAGTCAGCCAGCG GAGAGAAACCTGGCGGTGCCACATCAAAATCACCAAACGCAGCCAAAACT TCGCCAACAATGACGGACTACCTGTCGCTGCACTCGCGACTCGCCCAGGT GGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAATGACGAAC GCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGAGATCAAG CTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCATCAAGCT GGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCCATTGCCA GGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCTCCTCCAG ATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGACAAGGCAC ACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGACTGCAGT CTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAAGCTGGAG GAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTTGGTACAT CATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTTGTGGCCA ATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGAGCAGGGA TCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACGAAAAGCA TCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGGGCTATGA AGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCTTATATCTG CATGCCCATAGCGTGGACAACATCCTGATCAAGGTGGCCGATCCCGTTTT TATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAGGTGGTGG AGAAGGCAGCTCCCAACGAGGCTGTGGGCGTGGTGGCCATTGTCGATGGC AAATACCAGGTGGTGGAGTACAGCGAAATCTCGGCCAAAACAGCCGAGAT GCGCAATTCAGACGGCAGGCTGACCTTCAGTGCTGGCAACATTTGCAATC ACTTCTTCAGCTCGAACTTCCTGCAGAAGATTGGCAGCACATACGAGCAG GAGCTGAAGCTGCACGTGGCCAAGAAGAAGATTCCCTTCGTGGACAACGC CGGCAAGCGTCTAACGCCCGACAAGCCGAACGGCATCAAGATAGAGAAGT TTGTCTTTGACGTCTTCGAGTTCGCCCAGAAGTTCGTGGCCATGGAAGTG CCACGCGACGAAGAGTTCAGCGCGCTAAAGAACTCCGATGCAGCTGGCAA GGATTGCCCCAGTACTGCCCGCTCGGACCTCCATCGCCTGCACAAGAAGT ATATCGAAGGCGCCGGTGGCATTGTGCATGGCGAAGTCTGCGAGATCTCG CCCTTCGTCACCTACGCCGGCGAGAATCTCGCCTCGCATGTGGAGGGCAA GTCGTTCACCAGTCCCGTCTACCTGCGGGACAGCCGCGATCCCTTGCACG GACACCTTTAAGATGTAGGGGATCTGCATGGACGCATAGACTGATGGACG GATAGTAGTCGTTTCGATTATTTGTAAATCTTTCGTATACCGTTGATGAA CTTTATGATTCCCCAAACTGTAGTTAGTGCACGGAAATTCCATTGATTTC AGTACTTAAAGGAGACTTGTAAAAATTTGTTACCTATTGTGTCCGTTGAT TTATTTTTCGTTTTTGAAATAATTGTGCAATCGTAATGTGAATATATACA ATATATAGAACATGTAATGATATGAATATTTTAATATGTTGTAAAATACA AAAATTATTAGTACGGCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6467511..6468934 | 1918..495 | 7090 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 6470300..6470687 | 497..110 | 1940 | 100 | Minus |
chr2L | 23010047 | chr2L | 6470934..6471041 | 109..2 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6468536..6469961 | 1920..495 | 7130 | 100 | Minus |
2L | 23513712 | 2L | 6471327..6471714 | 497..110 | 1940 | 100 | Minus |
2L | 23513712 | 2L | 6471961..6472068 | 109..2 | 540 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6467511..6468932 | 497..1918 | 99 | <- | Minus |
chr2L | 6470301..6470687 | 110..496 | 100 | <- | Minus |
chr2L | 6470934..6471041 | 1..109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RA | 58..1563 | 106..1611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RA | 58..1563 | 106..1611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RA | 58..1563 | 106..1611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RA | 58..1563 | 106..1611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RA | 58..1563 | 106..1611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RB | 2..1919 | 1..1918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RB | 2..1919 | 1..1918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RB | 4..1921 | 1..1918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RB | 2..1919 | 1..1918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mmy-RB | 4..1921 | 1..1918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6468538..6469959 | 497..1918 | 100 | <- | Minus |
2L | 6471328..6471714 | 110..496 | 100 | <- | Minus |
2L | 6471961..6472068 | 1..109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6468538..6469959 | 497..1918 | 100 | <- | Minus |
2L | 6471328..6471714 | 110..496 | 100 | <- | Minus |
2L | 6471961..6472068 | 1..109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6468538..6469959 | 497..1918 | 100 | <- | Minus |
2L | 6471328..6471714 | 110..496 | 100 | <- | Minus |
2L | 6471961..6472068 | 1..109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6468538..6469959 | 497..1918 | 100 | <- | Minus |
arm_2L | 6471328..6471714 | 110..496 | 100 | <- | Minus |
arm_2L | 6471961..6472068 | 1..109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6468538..6469959 | 497..1918 | 100 | <- | Minus |
2L | 6471328..6471714 | 110..496 | 100 | <- | Minus |
2L | 6471961..6472068 | 1..109 | 99 | Minus |
Translation from 3 to 1610
> RE31673.hyp CALVTTYSGTQQSPDNPTTVFLPHSPNNQSASGEKPGGATSKSPNAAKTS PTMTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKL YFDRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQI SNGHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEE LAQEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGS LPCFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLH AHSVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGK YQVVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQE LKLHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVP RDEEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISP FVTYAGENLASHVEGKSFTSPVYLRDSRDPLHGHL*
Translation from 159 to 1610
> RE31673.pep MTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYF DRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISN GHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELA QEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLP CFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAH SVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQ VVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELK LHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRD EEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFV TYAGENLASHVEGKSFTSPVYLRDSRDPLHGHL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23678-PA | 519 | GF23678-PA | 37..519 | 1..483 | 2454 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23620-PA | 520 | GG23620-PA | 38..520 | 1..483 | 2559 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13251-PA | 478 | GH13251-PA | 5..478 | 7..483 | 2092 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mmy-PB | 483 | CG9535-PB | 1..483 | 1..483 | 2512 | 100 | Plus |
mmy-PA | 520 | CG9535-PA | 38..520 | 1..483 | 2512 | 100 | Plus |
mmy-PD | 483 | CG9535-PD | 1..483 | 1..483 | 2512 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17290-PA | 512 | GI17290-PA | 31..512 | 1..483 | 2079 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26105-PA | 521 | GL26105-PA | 39..521 | 1..483 | 2374 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21861-PA | 521 | GA21861-PA | 39..521 | 1..483 | 2373 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17936-PA | 520 | GM17936-PA | 38..520 | 1..483 | 2586 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22574-PA | 441 | GD22574-PA | 38..338 | 1..301 | 1609 | 100 | Plus |
Dsim\GD22574-PA | 441 | GD22574-PA | 335..441 | 377..483 | 561 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17900-PA | 481 | GJ17900-PA | 1..476 | 1..475 | 2134 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18694-PA | 509 | GK18694-PA | 29..509 | 3..483 | 2417 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18439-PA | 520 | GE18439-PA | 38..520 | 1..483 | 2557 | 98.6 | Plus |