Clone RE31673 Report

Search the DGRC for RE31673

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:316
Well:73
Vector:pFlc-1
Associated Gene/Transcriptmmy-RB
Protein status:RE31673.pep: gold
Sequenced Size:1934

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9535 2002-10-12 Blastp of sequenced clone
CG9535 2003-01-01 Sim4 clustering to Release 3
mmy 2008-04-29 Release 5.5 accounting
mmy 2008-08-15 Release 5.9 accounting
mmy 2008-12-18 5.12 accounting

Clone Sequence Records

RE31673.complete Sequence

1934 bp (1934 high quality bases) assembled on 2002-10-12

GenBank Submission: BT001608

> RE31673.complete
GGTTGCGCTTTGGTTACCACGTATAGCGGAACGCAACAAAGCCCGGACAA
CCCGACCACTGTCTTTTTACCGCATTCGCCAAATAATCAGTCAGCCAGCG
GAGAGAAACCTGGCGGTGCCACATCAAAATCACCAAACGCAGCCAAAACT
TCGCCAACAATGACGGACTACCTGTCGCTGCACTCGCGACTCGCCCAGGT
GGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAATGACGAAC
GCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGAGATCAAG
CTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCATCAAGCT
GGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCCATTGCCA
GGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCTCCTCCAG
ATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGACAAGGCAC
ACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGACTGCAGT
CTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAAGCTGGAG
GAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTTGGTACAT
CATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTTGTGGCCA
ATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGAGCAGGGA
TCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACGAAAAGCA
TCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGGGCTATGA
AGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCTTATATCTG
CATGCCCATAGCGTGGACAACATCCTGATCAAGGTGGCCGATCCCGTTTT
TATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAGGTGGTGG
AGAAGGCAGCTCCCAACGAGGCTGTGGGCGTGGTGGCCATTGTCGATGGC
AAATACCAGGTGGTGGAGTACAGCGAAATCTCGGCCAAAACAGCCGAGAT
GCGCAATTCAGACGGCAGGCTGACCTTCAGTGCTGGCAACATTTGCAATC
ACTTCTTCAGCTCGAACTTCCTGCAGAAGATTGGCAGCACATACGAGCAG
GAGCTGAAGCTGCACGTGGCCAAGAAGAAGATTCCCTTCGTGGACAACGC
CGGCAAGCGTCTAACGCCCGACAAGCCGAACGGCATCAAGATAGAGAAGT
TTGTCTTTGACGTCTTCGAGTTCGCCCAGAAGTTCGTGGCCATGGAAGTG
CCACGCGACGAAGAGTTCAGCGCGCTAAAGAACTCCGATGCAGCTGGCAA
GGATTGCCCCAGTACTGCCCGCTCGGACCTCCATCGCCTGCACAAGAAGT
ATATCGAAGGCGCCGGTGGCATTGTGCATGGCGAAGTCTGCGAGATCTCG
CCCTTCGTCACCTACGCCGGCGAGAATCTCGCCTCGCATGTGGAGGGCAA
GTCGTTCACCAGTCCCGTCTACCTGCGGGACAGCCGCGATCCCTTGCACG
GACACCTTTAAGATGTAGGGGATCTGCATGGACGCATAGACTGATGGACG
GATAGTAGTCGTTTCGATTATTTGTAAATCTTTCGTATACCGTTGATGAA
CTTTATGATTCCCCAAACTGTAGTTAGTGCACGGAAATTCCATTGATTTC
AGTACTTAAAGGAGACTTGTAAAAATTTGTTACCTATTGTGTCCGTTGAT
TTATTTTTCGTTTTTGAAATAATTGTGCAATCGTAATGTGAATATATACA
ATATATAGAACATGTAATGATATGAATATTTTAATATGTTGTAAAATACA
AAAATTATTAGTACGGCCAAAAAAAAAAAAAAAA

RE31673.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-RB 2030 mmy-RB 110..2028 2..1920 9595 100 Plus
mmy-RA 2174 mmy-RA 362..2172 110..1920 9055 100 Plus
mmy.a 1491 mmy.a 70..1491 497..1918 7110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6467511..6468934 1918..495 7090 99.9 Minus
chr2L 23010047 chr2L 6470300..6470687 497..110 1940 100 Minus
chr2L 23010047 chr2L 6470934..6471041 109..2 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6468536..6469961 1920..495 7130 100 Minus
2L 23513712 2L 6471327..6471714 497..110 1940 100 Minus
2L 23513712 2L 6471961..6472068 109..2 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6468536..6469961 1920..495 7130 100 Minus
2L 23513712 2L 6471327..6471714 497..110 1940 100 Minus
2L 23513712 2L 6471961..6472068 109..2 540 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:10:20 has no hits.

RE31673.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:11:07 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6467511..6468932 497..1918 99 <- Minus
chr2L 6470301..6470687 110..496 100 <- Minus
chr2L 6470934..6471041 1..109 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:23 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 58..1563 106..1611 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:41 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 58..1563 106..1611 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:21:54 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 58..1563 106..1611 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:02:31 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 58..1563 106..1611 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:53:05 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RA 58..1563 106..1611 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:33:33 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 2..1919 1..1918 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:41 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 2..1919 1..1918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:21:54 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 4..1921 1..1918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:02:31 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 2..1919 1..1918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:53:05 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 4..1921 1..1918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:11:07 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468538..6469959 497..1918 100 <- Minus
2L 6471328..6471714 110..496 100 <- Minus
2L 6471961..6472068 1..109 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:11:07 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468538..6469959 497..1918 100 <- Minus
2L 6471328..6471714 110..496 100 <- Minus
2L 6471961..6472068 1..109 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:11:07 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468538..6469959 497..1918 100 <- Minus
2L 6471328..6471714 110..496 100 <- Minus
2L 6471961..6472068 1..109 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:21:54 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6468538..6469959 497..1918 100 <- Minus
arm_2L 6471328..6471714 110..496 100 <- Minus
arm_2L 6471961..6472068 1..109 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:14 Download gff for RE31673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468538..6469959 497..1918 100 <- Minus
2L 6471328..6471714 110..496 100 <- Minus
2L 6471961..6472068 1..109 99   Minus

RE31673.hyp Sequence

Translation from 3 to 1610

> RE31673.hyp
CALVTTYSGTQQSPDNPTTVFLPHSPNNQSASGEKPGGATSKSPNAAKTS
PTMTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKL
YFDRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQI
SNGHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEE
LAQEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGS
LPCFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLH
AHSVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGK
YQVVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQE
LKLHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVP
RDEEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISP
FVTYAGENLASHVEGKSFTSPVYLRDSRDPLHGHL*

RE31673.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-PA 520 CG9535-PA 6..520 21..535 2595 97.3 Plus
mmy-PB 483 CG9535-PB 1..483 53..535 2512 100 Plus
mmy-PD 483 CG9535-PD 1..483 53..535 2512 100 Plus

RE31673.pep Sequence

Translation from 159 to 1610

> RE31673.pep
MTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYF
DRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISN
GHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELA
QEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLP
CFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAH
SVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQ
VVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELK
LHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRD
EEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFV
TYAGENLASHVEGKSFTSPVYLRDSRDPLHGHL*

RE31673.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23678-PA 519 GF23678-PA 37..519 1..483 2454 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23620-PA 520 GG23620-PA 38..520 1..483 2559 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13251-PA 478 GH13251-PA 5..478 7..483 2092 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-PB 483 CG9535-PB 1..483 1..483 2512 100 Plus
mmy-PA 520 CG9535-PA 38..520 1..483 2512 100 Plus
mmy-PD 483 CG9535-PD 1..483 1..483 2512 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17290-PA 512 GI17290-PA 31..512 1..483 2079 78.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26105-PA 521 GL26105-PA 39..521 1..483 2374 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21861-PA 521 GA21861-PA 39..521 1..483 2373 91.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17936-PA 520 GM17936-PA 38..520 1..483 2586 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22574-PA 441 GD22574-PA 38..338 1..301 1609 100 Plus
Dsim\GD22574-PA 441 GD22574-PA 335..441 377..483 561 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17900-PA 481 GJ17900-PA 1..476 1..475 2134 81.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18694-PA 509 GK18694-PA 29..509 3..483 2417 92.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18439-PA 520 GE18439-PA 38..520 1..483 2557 98.6 Plus