BDGP Sequence Production Resources |
Search the DGRC for RE31802
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 318 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | borr-RB |
Protein status: | RE31802.pep: gold |
Preliminary Size: | 1296 |
Sequenced Size: | 1309 |
Gene | Date | Evidence |
---|---|---|
CG4454 | 2002-10-01 | Blastp of sequenced clone |
Borr | 2008-04-29 | Release 5.5 accounting |
Borr | 2008-08-15 | Release 5.9 accounting |
borr | 2008-12-18 | 5.12 accounting |
1309 bp (1309 high quality bases) assembled on 2002-10-01
GenBank Submission: BT001609
> RE31802.complete ACTGTTCCATGACGCTTGAATTTTAGCGGACAAACTCGAAAAGAAATAGC AAAAAGACGACGCTTGCTACGAAAATAGTTATTCCTCGCAAAAACCCTGT AACGTGTAAACAAAGGCCGCTGCCACGATGCCGCGCACCAAGATACCAAA GAACTCCAAACGCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCC TGTACGAGCTGAAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAG ACCAAGTTCCTCTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCA GGTGCAGAAGGAGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCT TCGAGGAACTGGACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAG CTGCTCGCCTCGATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCC CTCCGCCACTGGAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCA GCATCGGTGCCAGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTG CTGCGGTCCACGAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAG GGCTCGTCGAGCGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATAT TGCACTCGGCCAAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGC AATTCGCGCAGCAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTT CAGTGCCGACCGCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGC CAACTACACCGCCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTG GCACTATCCAAATACGGCAGTCCCATGGTGGCTCAAGTAATGCCAGACAA GTTCGCCAATGTGAACATACCCATTCGGAACGGAGTTCTTAGCTTGCGGC CCAAAAAACTGGATGCCGACGAGGTGGAGTCAAATCTGTTGGAGAACCTG GACGAGGACACCCTTAACCAGATCAAAACGCTGCACGAGAACTTGCAGAT GATTGTTAATAAGGCCAGCCAGGCGGTGTTCAAGTAGCTGTCATTTCAAA CGCTTATCTAGATATAATGCTATATCATATATTTTAATACGTTTCGTTTA AGTTCAGTTTTCATTTTACTCATTTAGTTCAAGTATTTTGTCTTTATTCA TAAAGATCTATCGTATTTGCATAAGTTTCAATACATGTTCATATCCAAGT GTACGGCGATTTAAATGTAATGTTTTAAATACATGCTTAATCCAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
borr-RB | 1411 | borr-RB | 8..1313 | 1..1306 | 6515 | 99.9 | Plus |
borr.b | 1654 | borr.b | 4..1309 | 1..1306 | 6515 | 99.9 | Plus |
borr.a | 1642 | borr.a | 481..1297 | 490..1306 | 4070 | 99.8 | Plus |
borr.a | 1642 | borr.a | 4..482 | 1..479 | 2395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9251565..9252044 | 480..1 | 2400 | 100 | Minus |
chr2L | 23010047 | chr2L | 9250873..9251283 | 888..478 | 2055 | 100 | Minus |
chr2L | 23010047 | chr2L | 9250403..9250807 | 1293..889 | 2010 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9252634..9253113 | 480..1 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 9251459..9251876 | 1306..889 | 2075 | 99.8 | Minus |
2L | 23513712 | 2L | 9251942..9252352 | 888..478 | 2055 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9252634..9253113 | 480..1 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 9251459..9251876 | 1306..889 | 2075 | 99.7 | Minus |
2L | 23513712 | 2L | 9251942..9252352 | 888..478 | 2055 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9250873..9251281 | 480..888 | 100 | <- | Minus |
chr2L | 9250403..9250807 | 889..1293 | 99 | <- | Minus |
chr2L | 9251566..9252044 | 1..479 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 1..960 | 128..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 1..960 | 128..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 1..960 | 128..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Borr-RB | 1..960 | 128..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 1..960 | 128..1087 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 4..1296 | 1..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 4..1296 | 1..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 6..1298 | 1..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Borr-RB | 4..1296 | 1..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
borr-RB | 6..1298 | 1..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9251472..9251876 | 889..1293 | 99 | <- | Minus |
2L | 9251942..9252350 | 480..888 | 100 | <- | Minus |
2L | 9252635..9253113 | 1..479 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9251472..9251876 | 889..1293 | 99 | <- | Minus |
2L | 9251942..9252350 | 480..888 | 100 | <- | Minus |
2L | 9252635..9253113 | 1..479 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9251472..9251876 | 889..1293 | 99 | <- | Minus |
2L | 9251942..9252350 | 480..888 | 100 | <- | Minus |
2L | 9252635..9253113 | 1..479 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9251472..9251876 | 889..1293 | 99 | <- | Minus |
arm_2L | 9251942..9252350 | 480..888 | 100 | <- | Minus |
arm_2L | 9252635..9253113 | 1..479 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9251472..9251876 | 889..1293 | 99 | <- | Minus |
2L | 9251942..9252350 | 480..888 | 100 | <- | Minus |
2L | 9252635..9253113 | 1..479 | 100 | Minus |
Translation from 127 to 1086
> RE31802.pep MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG SAIEGHAPSATGSRNDEGYLTEDSSIGASGGSILAAHTGSLLRSTKAMRT PGPLHSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTP MASRAKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPM VAQVMPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIK TLHENLQMIVNKASQAVFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22038-PA | 318 | GF22038-PA | 1..318 | 1..319 | 1191 | 75.4 | Plus |
Dana\GF22049-PA | 218 | GF22049-PA | 87..214 | 183..315 | 232 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24035-PA | 312 | GG24035-PA | 1..312 | 1..319 | 1538 | 94.4 | Plus |
Dere\GG24036-PA | 218 | GG24036-PA | 88..212 | 179..315 | 259 | 40.7 | Plus |
Dere\GG24036-PA | 218 | GG24036-PA | 1..85 | 1..87 | 164 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13640-PA | 316 | GH13640-PA | 1..316 | 1..319 | 888 | 61 | Plus |
Dgri\GH13271-PA | 183 | GH13271-PA | 1..183 | 142..319 | 582 | 70.8 | Plus |
Dgri\GH13272-PA | 225 | GH13272-PA | 87..221 | 177..315 | 266 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
borr-PB | 319 | CG4454-PB | 1..319 | 1..319 | 1586 | 100 | Plus |
borr-PA | 315 | CG4454-PA | 1..315 | 1..319 | 1549 | 98.7 | Plus |
aust-PB | 216 | CG17009-PB | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PA | 216 | CG17009-PA | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PB | 216 | CG17009-PB | 1..98 | 1..99 | 178 | 41 | Plus |
aust-PA | 216 | CG17009-PA | 1..98 | 1..99 | 178 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11901-PA | 324 | GI11901-PA | 1..324 | 1..319 | 932 | 63 | Plus |
Dmoj\GI11912-PA | 221 | GI11912-PA | 87..217 | 178..315 | 278 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25535-PA | 318 | GL25535-PA | 1..318 | 1..319 | 1150 | 73.6 | Plus |
Dper\GL21274-PA | 226 | GL21274-PA | 87..222 | 179..315 | 215 | 38.7 | Plus |
Dper\GL10058-PA | 226 | GL10058-PA | 87..222 | 179..315 | 202 | 38 | Plus |
Dper\GL19675-PA | 226 | GL19675-PA | 87..222 | 179..315 | 199 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18196-PA | 318 | GA18196-PA | 1..318 | 1..319 | 1153 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12517-PA | 314 | GM12517-PA | 1..314 | 1..319 | 1600 | 97.5 | Plus |
Dsec\GM12528-PA | 217 | GM12528-PA | 86..211 | 177..315 | 243 | 38.8 | Plus |
Dsec\GM12528-PA | 217 | GM12528-PA | 1..74 | 1..74 | 168 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22362-PA | 315 | GD22362-PA | 1..315 | 1..319 | 1611 | 97.5 | Plus |
Dsim\GD22363-PA | 216 | GD22363-PA | 86..210 | 177..315 | 237 | 38.7 | Plus |
Dsim\GD22363-PA | 216 | GD22363-PA | 1..74 | 1..74 | 168 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14013-PA | 325 | GJ14013-PA | 1..325 | 1..319 | 936 | 64.5 | Plus |
Dvir\GJ14024-PA | 220 | GJ14024-PA | 89..216 | 179..315 | 263 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15062-PA | 331 | GK15062-PA | 1..331 | 1..319 | 893 | 59.3 | Plus |
Dwil\GK15971-PA | 257 | GK15971-PA | 1..257 | 30..319 | 490 | 43.2 | Plus |
Dwil\GK15063-PA | 144 | GK15063-PA | 59..142 | 229..314 | 174 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10577-PA | 313 | GE10577-PA | 1..313 | 1..319 | 1587 | 96.6 | Plus |
Dyak\GE10588-PA | 218 | GE10588-PA | 88..212 | 179..315 | 257 | 42.1 | Plus |
Dyak\GE10588-PA | 218 | GE10588-PA | 1..74 | 1..74 | 165 | 47.3 | Plus |
Translation from 127 to 1086
> RE31802.hyp MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG SAIEGHAPSATGSRNDEGYLTEDSSIGASGGSILAAHTGSLLRSTKAMRT PGPLHSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTP MASRAKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPM VAQVMPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIK TLHENLQMIVNKASQAVFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
borr-PB | 319 | CG4454-PB | 1..319 | 1..319 | 1586 | 100 | Plus |
borr-PA | 315 | CG4454-PA | 1..315 | 1..319 | 1549 | 98.7 | Plus |
aust-PB | 216 | CG17009-PB | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PA | 216 | CG17009-PA | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PB | 216 | CG17009-PB | 1..98 | 1..99 | 178 | 41 | Plus |
aust-PA | 216 | CG17009-PA | 1..98 | 1..99 | 178 | 41 | Plus |