Clone RE31991 Report

Search the DGRC for RE31991

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:319
Well:91
Vector:pFlc-1
Associated Gene/TranscriptCG43338-RA
Protein status:RE31991.pep: gold
Sequenced Size:2643

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31790 2003-01-01 Sim4 clustering to Release 3
CG31790 2005-01-26 Blastp of sequenced clone
CG31790 2008-04-29 Release 5.5 accounting
CG31790 2008-08-15 Release 5.9 accounting
CG31790 2008-12-18 5.12 accounting

Clone Sequence Records

RE31991.complete Sequence

2643 bp (2643 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021287

> RE31991.complete
AGTTCTTCGACGGCTTTTACTGGGAACAGTTGACTTGGTTCTTGGAGTGC
TTTAAATATTCGTGGCTCTAAATATGCCCAGTGAAAATCATCTGCATCAC
CATCACTTGGGACACACTGGTGGATTATCTCCGCATCATCATCACTTGTT
GGACACATCCTGCAGCAATACGGGAATCACTGTGACAGAACATCATCATG
GTCTCGACTTGACCACCACACTGCGCAGTGAACTGGCTGCGTTGTCCTAC
AAAAAGGAGCGACTTACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTG
CAGCAAAGATGCGGATATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGA
CTGCCCTCATCGGATCCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGG
GAGCAGGCTGTCCAGGCCCGATGTGATTCCACCATTCAGACGGTGCAGCG
GGAGAAGCGTAGCTCCGACGAGCGCAACAAAGAGCTAATCTGCAAGATAC
AGCATCTGGAAACGCATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATC
AAGGCTCAGCTGCACGATCTCCTGCGACGCCTTAGCATCACTTTGGGAAT
GGATGTGTGCGATGGCAATCAGAATTCCCATGCCACACCCGAGTGCATCA
TCTCGCGGGCCGAGGAGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAG
GTCAGTTCCACCTGCGACACGCTCAGCTCCTGCGAAAATGAACTGCTCAA
CTTGAAGTCGCTGGCCAACATTGAGAAGCAGCGGCTCACGGCCCAACTTG
ATGGAGCTGGCAATCACAACCACGAGTTGGAAGGACGCTGTCGCCAATAC
GAAAGGGATCTTCAGATCCAAAGAGATCGCTTGACTGAATCGGAAATCAA
CGGCGAGAAGCTCAAGGAAGAGCTGCGCGGCTTTGAGTCGCGATGCCATC
GTTTGCAAAACAACCTGGACCGGACTCAGGGCGATCGTCTGCAGTTCTTG
CGGGGATTGAGCAATCTCTTGAATGTTCCCGAACCGTGCGAAACGCTCAT
CAAGGACAAGCTGAGAGAGATTCTGGCGGAGAACCAGGCCATGCATGCGC
AAATGCACTCTCTGCGAGATCAGCTGAACTCGGAGCATGAGAAGCTTAAG
GAAACCCAACAGACCACCGAATGTCGCCTCCGTTCTGGCGAGGCTCAGAA
ATGTGAGCTAACTGAGCGCTTGGAGAAGTGCCATGCCGAGATCCATACTC
TTCGAAAGGATCACATGGGTCTATCGGAGTTCCTGCAGCGACTGGCCCTC
GCGATGAACTGGGGTGAGTGCTCTGCCCCTCCGGCTCTTGGAACTGATAC
CAATCTAATGGCGGAGAACTTGCTTGAGAGAGCCGAGAGACTCGCCGCTC
ACTGCGACCACGAGGCACCTCATCATCATCATCATCATCACAGTCCGGAT
AAGGGTTGCTGTGATCACGGACATGGTCATGGGAAACTTCGCCGCGAGAG
ATCCTGTCATGACATTCCCCTCAAGGAAAGCAGCAGTGTCTACAACCTGC
AGCGACGTGTTCGAGTTCTCAGGGAGCAAGTGCAGCGACGGGATCTCCAC
CTGGAGCTACTGCGTCGCAAGCTGGCCATCATAGAGGACGGTGCGCGAGG
AAAGTGCATGTTGCAGGGTGAACGGGATGAGGCGGTTTGCCGGGCCAAGA
AGGCGGCCAAGCAGGTGGACAAGTTGAGTGCCCAGCTGGCCGATGCCCGA
TCTCAGATAGCAGAGGTCAAGGCCCAGCTAGCCGAGGCTGTGGAGTATAA
GATCACCTCGTTGGAGAGGGCCAGAAAGATCGATGAGCTGACCACACAGA
TATGCGATCTGGAGGATGAGAAGACGCGCCTGCTCTCCCAACTTAATGCC
CTGAAGGAGCGCCTCAAGTCCTCCTGTGAATCCAATCAGAATCGCAGATG
CCGCGATGAGGCGCTAATAAATTCTATGCGCGATGATGTCAGTCGCTTGA
GCTCCCAACTCTCGGATGCCAATCAGCGGCTTTCGCATTTGCAATCCTTC
CGCACATCGGTGGCCAGGACACTGCATCTTCGCGACCTGCCGGAAACGGA
TCTTCTGCATCGCCTGCAGGCCCTGTGCTCGGCACATCAGGAGTTCACAA
TGCTTTCGAAACGCTATGAGACAGCTTCGCCAGTTGGAGATCATCCGTGT
CCTCGGTTCGATGATCCCATACCGCCATCCAGCCACTGTCGCCCGCCAAG
GGAGCTCAGTCCTCCGCCAACTTCCTTCCACCATAAGGCGACCATCCATT
CAGGCAGCAGCCATCACTCACCACCGTCTGAGCATCATCATGGTTCCAGC
AGCCATGTGCACAATCACCACGGACATGGACACGGACACGGTCACTCATC
GCATTCCAGGCGGCAGCGAAGTAAAAGCCGGGACAAACGACTCCACGATG
AGTGCTTCGACACGGATGTGCATCGACTGCACCATGGCTGCAAGGAGGAG
CTACTGGCCACCGGATCGGAGGATGACTATGACTTCAAGAGCAAATACTG
CTAGAGTACTAAACTTTTTCTTTGCATTTGTATTTTTTCAAAATAACTCA
GAATAATATATGGTTTCTACATTTCAGAAAAAAAAAAAAAAAA

RE31991.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31790-RA 2630 CG31790-RA 1..2630 1..2630 13120 99.9 Plus
CG31790.a 2843 CG31790.a 214..2843 1..2630 13120 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18666324..18667197 1972..1099 4355 99.9 Minus
chr2L 23010047 chr2L 18667258..18668084 1099..273 4030 99.2 Minus
chr2L 23010047 chr2L 18665611..18666263 2625..1973 3220 99.5 Minus
chr2L 23010047 chr2L 18668605..18668756 152..1 715 98 Minus
chr2L 23010047 chr2L 18668155..18668279 274..150 625 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18667607..18668480 1972..1099 4370 100 Minus
2L 23513712 2L 18668541..18669367 1099..273 4135 100 Minus
2L 23513712 2L 18666888..18667546 2631..1973 3280 99.8 Minus
2L 23513712 2L 18669888..18670039 152..1 745 99.3 Minus
2L 23513712 2L 18669438..18669562 274..150 625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18667607..18668480 1972..1099 4370 100 Minus
2L 23513712 2L 18668541..18669367 1099..273 4135 100 Minus
2L 23513712 2L 18666888..18667546 2631..1973 3280 99.8 Minus
2L 23513712 2L 18669888..18670039 152..1 745 99.3 Minus
2L 23513712 2L 18669438..18669562 274..150 625 100 Minus
Blast to na_te.dros performed 2019-03-15 14:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 1553..1637 2606..2522 118 65.9 Minus

RE31991.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:11:10 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18665609..18666263 1973..2627 99 <- Minus
chr2L 18666324..18667196 1100..1972 97 <- Minus
chr2L 18667258..18668082 275..1099 99 <- Minus
chr2L 18668155..18668280 149..274 99 <- Minus
chr2L 18668609..18668756 1..148 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:30 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG31790-RA 1..2481 74..2554 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:02 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG31790-RA 1..2481 74..2554 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:21:58 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG43338-RA 1..2481 74..2554 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:37 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG31790-RA 1..2481 74..2554 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:53:13 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG43338-RA 1..2481 74..2554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:06:29 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG31790-RA 1..2626 1..2627 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:01 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG31790-RA 1..2626 1..2627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:21:58 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG43338-RA 5..2630 1..2627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:37 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG31790-RA 1..2626 1..2627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:53:13 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
CG43338-RA 5..2630 1..2627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:11:10 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18669892..18670039 1..148 100   Minus
2L 18666892..18667546 1973..2627 99 <- Minus
2L 18667607..18668479 1100..1972 100 <- Minus
2L 18668541..18669365 275..1099 100 <- Minus
2L 18669438..18669563 149..274 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:11:10 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18669892..18670039 1..148 100   Minus
2L 18666892..18667546 1973..2627 99 <- Minus
2L 18667607..18668479 1100..1972 100 <- Minus
2L 18668541..18669365 275..1099 100 <- Minus
2L 18669438..18669563 149..274 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:11:10 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18669892..18670039 1..148 100   Minus
2L 18666892..18667546 1973..2627 99 <- Minus
2L 18667607..18668479 1100..1972 100 <- Minus
2L 18668541..18669365 275..1099 100 <- Minus
2L 18669438..18669563 149..274 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:21:58 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18666892..18667546 1973..2627 99 <- Minus
arm_2L 18667607..18668479 1100..1972 100 <- Minus
arm_2L 18668541..18669365 275..1099 100 <- Minus
arm_2L 18669438..18669563 149..274 99 <- Minus
arm_2L 18669892..18670039 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:31:56 Download gff for RE31991.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18669892..18670039 1..148 100   Minus
2L 18666892..18667546 1973..2627 99 <- Minus
2L 18667607..18668479 1100..1972 100 <- Minus
2L 18668541..18669365 275..1099 100 <- Minus
2L 18669438..18669563 149..274 99 <- Minus

RE31991.pep Sequence

Translation from 73 to 2553

> RE31991.pep
MPSENHLHHHHLGHTGGLSPHHHHLLDTSCSNTGITVTEHHHGLDLTTTL
RSELAALSYKKERLTGELAEARAALCSKDADIENLRAQAARQTALIGSLQ
SRLQNSESREQAVQARCDSTIQTVQREKRSSDERNKELICKIQHLETHMA
SEESQKEQIKAQLHDLLRRLSITLGMDVCDGNQNSHATPECIISRAEEVM
VELQRTKAKVSSTCDTLSSCENELLNLKSLANIEKQRLTAQLDGAGNHNH
ELEGRCRQYERDLQIQRDRLTESEINGEKLKEELRGFESRCHRLQNNLDR
TQGDRLQFLRGLSNLLNVPEPCETLIKDKLREILAENQAMHAQMHSLRDQ
LNSEHEKLKETQQTTECRLRSGEAQKCELTERLEKCHAEIHTLRKDHMGL
SEFLQRLALAMNWGECSAPPALGTDTNLMAENLLERAERLAAHCDHEAPH
HHHHHHSPDKGCCDHGHGHGKLRRERSCHDIPLKESSSVYNLQRRVRVLR
EQVQRRDLHLELLRRKLAIIEDGARGKCMLQGERDEAVCRAKKAAKQVDK
LSAQLADARSQIAEVKAQLAEAVEYKITSLERARKIDELTTQICDLEDEK
TRLLSQLNALKERLKSSCESNQNRRCRDEALINSMRDDVSRLSSQLSDAN
QRLSHLQSFRTSVARTLHLRDLPETDLLHRLQALCSAHQEFTMLSKRYET
ASPVGDHPCPRFDDPIPPSSHCRPPRELSPPPTSFHHKATIHSGSSHHSP
PSEHHHGSSSHVHNHHGHGHGHGHSSHSRRQRSKSRDKRLHDECFDTDVH
RLHHGCKEELLATGSEDDYDFKSKYC*

RE31991.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14834-PA 828 GF14834-PA 1..828 1..826 3645 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21697-PA 824 GG21697-PA 1..824 1..826 3933 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10524-PA 816 GH10524-PA 1..816 1..826 3392 81.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG43338-PA 826 CG31790-PA 1..826 1..826 4359 100 Plus
CG43338-PB 853 CG43338-PB 53..853 26..826 4202 100 Plus
GM130-PA 795 CG11061-PA 70..652 13..503 172 21.7 Plus
brp-PH 1740 CG42344-PH 470..1117 67..653 170 21.9 Plus
brp-PE 1740 CG42344-PE 470..1117 67..653 170 21.9 Plus
brp-PD 1740 CG42344-PD 470..1117 67..653 170 21.9 Plus
brp-PG 1786 CG42344-PG 516..1163 67..653 170 21.9 Plus
brp-PJ 2238 CG42344-PJ 968..1615 67..653 170 21.9 Plus
Golgin245-PA 1489 CG3493-PA 634..1337 23..700 169 19.8 Plus
brp-PK 1707 CG42344-PK 344..989 53..707 167 20 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18041-PA 807 GI18041-PA 1..806 1..825 3305 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19307-PA 831 GL19307-PA 1..435 1..435 2008 91.3 Plus
Dper\GL19307-PA 831 GL19307-PA 508..831 499..826 1369 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16478-PA 828 GA16478-PA 1..828 1..826 3588 86.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17078-PA 825 GM17078-PA 1..825 1..826 4251 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21823-PA 812 GD21823-PA 1..812 1..826 4172 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19787-PA 811 GJ19787-PA 1..811 1..826 3385 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23776-PA 815 GK23776-PA 1..815 1..826 3491 84 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12721-PA 828 GE12721-PA 1..828 1..826 4161 96.4 Plus

RE31991.hyp Sequence

Translation from 73 to 2553

> RE31991.hyp
MPSENHLHHHHLGHTGGLSPHHHHLLDTSCSNTGITVTEHHHGLDLTTTL
RSELAALSYKKERLTGELAEARAALCSKDADIENLRAQAARQTALIGSLQ
SRLQNSESREQAVQARCDSTIQTVQREKRSSDERNKELICKIQHLETHMA
SEESQKEQIKAQLHDLLRRLSITLGMDVCDGNQNSHATPECIISRAEEVM
VELQRTKAKVSSTCDTLSSCENELLNLKSLANIEKQRLTAQLDGAGNHNH
ELEGRCRQYERDLQIQRDRLTESEINGEKLKEELRGFESRCHRLQNNLDR
TQGDRLQFLRGLSNLLNVPEPCETLIKDKLREILAENQAMHAQMHSLRDQ
LNSEHEKLKETQQTTECRLRSGEAQKCELTERLEKCHAEIHTLRKDHMGL
SEFLQRLALAMNWGECSAPPALGTDTNLMAENLLERAERLAAHCDHEAPH
HHHHHHSPDKGCCDHGHGHGKLRRERSCHDIPLKESSSVYNLQRRVRVLR
EQVQRRDLHLELLRRKLAIIEDGARGKCMLQGERDEAVCRAKKAAKQVDK
LSAQLADARSQIAEVKAQLAEAVEYKITSLERARKIDELTTQICDLEDEK
TRLLSQLNALKERLKSSCESNQNRRCRDEALINSMRDDVSRLSSQLSDAN
QRLSHLQSFRTSVARTLHLRDLPETDLLHRLQALCSAHQEFTMLSKRYET
ASPVGDHPCPRFDDPIPPSSHCRPPRELSPPPTSFHHKATIHSGSSHHSP
PSEHHHGSSSHVHNHHGHGHGHGHSSHSRRQRSKSRDKRLHDECFDTDVH
RLHHGCKEELLATGSEDDYDFKSKYC*

RE31991.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG43338-PA 826 CG31790-PA 1..826 1..826 4359 100 Plus
CG43338-PB 853 CG43338-PB 53..853 26..826 4202 100 Plus
GM130-PA 795 CG11061-PA 70..652 13..503 172 21.7 Plus
brp-PH 1740 CG42344-PH 470..1117 67..653 170 21.9 Plus
brp-PE 1740 CG42344-PE 470..1117 67..653 170 21.9 Plus