BDGP Sequence Production Resources |
Search the DGRC for RE31995
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 319 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | beta4GalNAcTB-RA |
Protein status: | RE31995.pep: gold |
Sequenced Size: | 1365 |
Gene | Date | Evidence |
---|---|---|
CG14517 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14517 | 2004-01-14 | Blastp of sequenced clone |
beta4GalNAcTB | 2008-04-29 | Release 5.5 accounting |
beta4GalNAcTB | 2008-08-15 | Release 5.9 accounting |
beta4GalNAcTB | 2008-12-18 | 5.12 accounting |
1365 bp (1365 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011457
> RE31995.complete GTTGTTCGCCAACCGGCCGCGAAGATTGCGTCCGAAATTAGGATGCGGAG TTTCCAAAGATCGCACTGAGTCAACTTTTCCTGCCAACAATGTTCGTGCG GCTCTGGGTCCGCAGCTTCCATAAATATGATCTTCTCATCGCCATCGGAC TGATCACTCTCATCGTGTACCTGTGTCTGCCCTTCCGGTTCGCATCGCAC TACGACTACATCGAGGAATCAAAGATCGAGGGGGCTCTGGTGCCGCAGGT GACCAGAAATGTCTCCCAGCAGGAAGTTTTCGAATGCACCTACTCGGAGA TCATTGCCGAAAACCGGTTCGTCTACCACCTGGCCCATTACCATGACGCG GTGCAGAGGGGCGCGGAGATCCGTCCTGGCGGCGAGTTCCGTCCGGAAGG ATGTCAGGCTCGCTACAGCACCGCCATCATTGTGCCGTACAGGCAGCGGG AGGAGCAGCTGCACGCCTTCCTCACGTACATGCACAATTACCTGCCGCAG CAGCTGATCCACTATCGGATTTTCCTGGTCGAACAGTTCGATCATAAGCC GTTTAACAGGGCGATGCTCTTCAACATTGGCGCCCAGGTGGCTGCGGAGT ATGGATTTCCCTGCCTCATCCTTCATGACGTGGACCTCCTGCCACTGAAT TCGGGTCAAATATATGCCTGCTCCGAACGTCCACGGCACATGAGCTCTGC CCTGGATCACTGGCGATTCCGACTGCCTTACCGCGGTCTTTTCGGCGGCG TGGTGGCCATCAACACCGCCCAGTACCAGCAGATCAACGGCATGTCCAAT CTGTATTACGGCTGGGGCGGAGAGGACGATGACCTCTACGAGCGCCTGCA GGCCCTGAATATCGACATTTGCCGATTCGCAATGGAGTTCAGTAAGTACA CCATGCTGAAGCACAAACAGGAGCAGCCGAATGCCAATCGCGTGGCACTG CTGAGATCGGCGACTCTGCGCCAGCACGCGGATGGACTCAACTCACTGGT GTACACGGAAATGGAGCGGCGAATGCACAGTTTGTTCACGCACATCCTGG TTGATACCTGAGTGCCAGTATTTGTTATTGTATTTAGCTTGTAGGCCAAT CGTTTTCGTAGTCGGTATCTCGAAGTGTTTTATACTTGGCTGCACTTCGC TTCGCAACCGATTAGTTACCGCCTTAGACAATGCGTTCCGAATCGATCGT GATATCTCACTCACTAGGCTAAGAAGCTAGACGGGAATGGAGGAGTCAAA GCTGTAATTGAAGTACAATGCAGAAGCCTCAGATTAAGCGGATATCGACA TGTTAAGCACGCTCTGCCTCTGCCAATAAAAATGTATTGAATTTAATCGA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
beta4GalNAcTB-RA | 1348 | beta4GalNAcTB-RA | 1..1348 | 1..1348 | 6725 | 99.9 | Plus |
nc_19791.a | 1265 | nc_19791.a | 1..1055 | 1344..290 | 5275 | 100 | Minus |
nc_19791.a | 1265 | nc_19791.a | 1052..1260 | 209..1 | 1030 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29032661..29034008 | 1348..1 | 6725 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 28773492..28774839 | 1348..1 | 6725 | 99.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 24855629..24855765 | 1213..1349 | 99 | == | Minus |
chr3R | 24855766..24856953 | 1..1188 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..972 | 90..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..972 | 90..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..972 | 90..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..972 | 90..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..972 | 90..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..1297 | 1..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..1348 | 1..1349 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..1348 | 1..1349 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..1061 | 1..1061 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTB-RA | 1..1348 | 1..1349 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29032660..29034008 | 1..1349 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29032660..29034008 | 1..1349 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29032660..29034008 | 1..1349 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 24858382..24859730 | 1..1349 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 28773491..28774839 | 1..1349 | 99 | Minus |
Translation from 89 to 1060
> RE31995.pep MFVRLWVRSFHKYDLLIAIGLITLIVYLCLPFRFASHYDYIEESKIEGAL VPQVTRNVSQQEVFECTYSEIIAENRFVYHLAHYHDAVQRGAEIRPGGEF RPEGCQARYSTAIIVPYRQREEQLHAFLTYMHNYLPQQLIHYRIFLVEQF DHKPFNRAMLFNIGAQVAAEYGFPCLILHDVDLLPLNSGQIYACSERPRH MSSALDHWRFRLPYRGLFGGVVAINTAQYQQINGMSNLYYGWGGEDDDLY ERLQALNIDICRFAMEFSKYTMLKHKQEQPNANRVALLRSATLRQHADGL NSLVYTEMERRMHSLFTHILVDT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18727-PA | 323 | GF18727-PA | 1..323 | 1..323 | 1465 | 84.3 | Plus |
Dana\GF13490-PA | 391 | GF13490-PA | 151..383 | 91..322 | 556 | 44.2 | Plus |
Dana\beta4GalT7-PA | 318 | GF16319-PA | 68..223 | 106..262 | 266 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12042-PA | 323 | GG12042-PA | 1..323 | 1..323 | 1655 | 95.4 | Plus |
Dere\GG20439-PA | 403 | GG20439-PA | 163..395 | 91..322 | 563 | 45.5 | Plus |
Dere\beta4GalT7-PA | 322 | GG11346-PA | 73..227 | 107..262 | 224 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23682-PA | 322 | GH23682-PA | 1..322 | 1..323 | 1145 | 67.8 | Plus |
Dgri\GH21793-PA | 410 | GH21793-PA | 170..385 | 91..305 | 553 | 47.2 | Plus |
Dgri\GH22239-PA | 310 | GH22239-PA | 61..215 | 107..262 | 268 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
beta4GalNAcTB-PA | 323 | CG14517-PA | 1..323 | 1..323 | 1719 | 100 | Plus |
beta4GalNAcTA-PA | 403 | CG8536-PA | 163..395 | 91..322 | 551 | 45.5 | Plus |
beta4GalT7-PA | 322 | CG11780-PA | 75..227 | 109..262 | 273 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24526-PA | 322 | GI24526-PA | 1..322 | 1..323 | 1183 | 66.6 | Plus |
Dmoj\GI20541-PA | 406 | GI20541-PA | 166..381 | 91..305 | 539 | 45.4 | Plus |
Dmoj\beta4GalT7-PA | 309 | GI22222-PA | 59..214 | 106..262 | 261 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23283-PA | 322 | GL23283-PA | 1..322 | 1..323 | 1286 | 74.3 | Plus |
Dper\GL10126-PA | 196 | GL10126-PA | 2..188 | 137..322 | 439 | 44.4 | Plus |
Dper\GL24409-PA | 569 | GL24409-PA | 320..474 | 107..262 | 260 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13048-PA | 322 | GA13048-PA | 1..322 | 1..323 | 1297 | 75.2 | Plus |
Dpse\GA21145-PA | 399 | GA21145-PA | 159..374 | 91..305 | 546 | 45.8 | Plus |
Dpse\GA11195-PA | 321 | GA11195-PA | 72..226 | 107..262 | 258 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12269-PA | 323 | GM12269-PA | 1..323 | 1..323 | 1656 | 95.7 | Plus |
Dsec\GM21525-PA | 403 | GM21525-PA | 163..395 | 91..322 | 561 | 45.5 | Plus |
Dsec\beta4GalT7-PA | 195 | GM17784-PA | 72..195 | 107..231 | 168 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18000-PA | 323 | GD18000-PA | 1..323 | 1..323 | 1683 | 96.6 | Plus |
Dsim\GD11035-PA | 414 | GD11035-PA | 163..406 | 91..322 | 540 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22594-PA | 322 | GJ22594-PA | 1..322 | 1..323 | 1182 | 67.5 | Plus |
Dvir\GJ22392-PA | 406 | GJ22392-PA | 166..381 | 91..305 | 548 | 46.3 | Plus |
Dvir\GJ24343-PA | 308 | GJ24343-PA | 58..271 | 106..316 | 268 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22603-PA | 316 | GK22603-PA | 2..316 | 7..323 | 1262 | 73.2 | Plus |
Dwil\GK20782-PA | 384 | GK20782-PA | 144..376 | 91..322 | 547 | 44.2 | Plus |
Dwil\GK14189-PA | 319 | GK14189-PA | 70..224 | 107..262 | 249 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10481-PA | 323 | GE10481-PA | 1..323 | 1..323 | 1663 | 95.7 | Plus |
Dyak\GE13570-PA | 403 | GE13570-PA | 163..395 | 91..322 | 561 | 45.5 | Plus |
Dyak\beta4GalT7-PA | 322 | GE23542-PA | 75..276 | 109..305 | 265 | 31.9 | Plus |
Translation from 89 to 1060
> RE31995.hyp MFVRLWVRSFHKYDLLIAIGLITLIVYLCLPFRFASHYDYIEESKIEGAL VPQVTRNVSQQEVFECTYSEIIAENRFVYHLAHYHDAVQRGAEIRPGGEF RPEGCQARYSTAIIVPYRQREEQLHAFLTYMHNYLPQQLIHYRIFLVEQF DHKPFNRAMLFNIGAQVAAEYGFPCLILHDVDLLPLNSGQIYACSERPRH MSSALDHWRFRLPYRGLFGGVVAINTAQYQQINGMSNLYYGWGGEDDDLY ERLQALNIDICRFAMEFSKYTMLKHKQEQPNANRVALLRSATLRQHADGL NSLVYTEMERRMHSLFTHILVDT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
beta4GalNAcTB-PA | 323 | CG14517-PA | 1..323 | 1..323 | 1719 | 100 | Plus |
beta4GalNAcTA-PA | 403 | CG8536-PA | 163..395 | 91..322 | 551 | 45.5 | Plus |
beta4GalT7-PA | 322 | CG11780-PA | 75..227 | 109..262 | 273 | 35.9 | Plus |