Clone RE31995 Report

Search the DGRC for RE31995

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:319
Well:95
Vector:pFlc-1
Associated Gene/Transcriptbeta4GalNAcTB-RA
Protein status:RE31995.pep: gold
Sequenced Size:1365

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14517 2003-01-01 Sim4 clustering to Release 3
CG14517 2004-01-14 Blastp of sequenced clone
beta4GalNAcTB 2008-04-29 Release 5.5 accounting
beta4GalNAcTB 2008-08-15 Release 5.9 accounting
beta4GalNAcTB 2008-12-18 5.12 accounting

Clone Sequence Records

RE31995.complete Sequence

1365 bp (1365 high quality bases) assembled on 2004-01-14

GenBank Submission: BT011457

> RE31995.complete
GTTGTTCGCCAACCGGCCGCGAAGATTGCGTCCGAAATTAGGATGCGGAG
TTTCCAAAGATCGCACTGAGTCAACTTTTCCTGCCAACAATGTTCGTGCG
GCTCTGGGTCCGCAGCTTCCATAAATATGATCTTCTCATCGCCATCGGAC
TGATCACTCTCATCGTGTACCTGTGTCTGCCCTTCCGGTTCGCATCGCAC
TACGACTACATCGAGGAATCAAAGATCGAGGGGGCTCTGGTGCCGCAGGT
GACCAGAAATGTCTCCCAGCAGGAAGTTTTCGAATGCACCTACTCGGAGA
TCATTGCCGAAAACCGGTTCGTCTACCACCTGGCCCATTACCATGACGCG
GTGCAGAGGGGCGCGGAGATCCGTCCTGGCGGCGAGTTCCGTCCGGAAGG
ATGTCAGGCTCGCTACAGCACCGCCATCATTGTGCCGTACAGGCAGCGGG
AGGAGCAGCTGCACGCCTTCCTCACGTACATGCACAATTACCTGCCGCAG
CAGCTGATCCACTATCGGATTTTCCTGGTCGAACAGTTCGATCATAAGCC
GTTTAACAGGGCGATGCTCTTCAACATTGGCGCCCAGGTGGCTGCGGAGT
ATGGATTTCCCTGCCTCATCCTTCATGACGTGGACCTCCTGCCACTGAAT
TCGGGTCAAATATATGCCTGCTCCGAACGTCCACGGCACATGAGCTCTGC
CCTGGATCACTGGCGATTCCGACTGCCTTACCGCGGTCTTTTCGGCGGCG
TGGTGGCCATCAACACCGCCCAGTACCAGCAGATCAACGGCATGTCCAAT
CTGTATTACGGCTGGGGCGGAGAGGACGATGACCTCTACGAGCGCCTGCA
GGCCCTGAATATCGACATTTGCCGATTCGCAATGGAGTTCAGTAAGTACA
CCATGCTGAAGCACAAACAGGAGCAGCCGAATGCCAATCGCGTGGCACTG
CTGAGATCGGCGACTCTGCGCCAGCACGCGGATGGACTCAACTCACTGGT
GTACACGGAAATGGAGCGGCGAATGCACAGTTTGTTCACGCACATCCTGG
TTGATACCTGAGTGCCAGTATTTGTTATTGTATTTAGCTTGTAGGCCAAT
CGTTTTCGTAGTCGGTATCTCGAAGTGTTTTATACTTGGCTGCACTTCGC
TTCGCAACCGATTAGTTACCGCCTTAGACAATGCGTTCCGAATCGATCGT
GATATCTCACTCACTAGGCTAAGAAGCTAGACGGGAATGGAGGAGTCAAA
GCTGTAATTGAAGTACAATGCAGAAGCCTCAGATTAAGCGGATATCGACA
TGTTAAGCACGCTCTGCCTCTGCCAATAAAAATGTATTGAATTTAATCGA
AAAAAAAAAAAAAAA

RE31995.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTB-RA 1348 beta4GalNAcTB-RA 1..1348 1..1348 6725 99.9 Plus
nc_19791.a 1265 nc_19791.a 1..1055 1344..290 5275 100 Minus
nc_19791.a 1265 nc_19791.a 1052..1260 209..1 1030 99.5 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24855766..24856953 1188..1 5925 99.9 Minus
chr3R 27901430 chr3R 24855630..24855767 1348..1211 690 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29032661..29034008 1348..1 6725 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28773492..28774839 1348..1 6725 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 05:25:11 has no hits.

RE31995.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:26:13 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24855629..24855765 1213..1349 99 == Minus
chr3R 24855766..24856953 1..1188 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:31 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..972 90..1061 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:41:49 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..972 90..1061 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:27:00 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..972 90..1061 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:30:37 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..972 90..1061 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:02:35 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..972 90..1061 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:51:16 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..1297 1..1297 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:41:49 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..1348 1..1349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:00 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..1348 1..1349 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:30:37 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..1061 1..1061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:02:35 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTB-RA 1..1348 1..1349 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:13 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29032660..29034008 1..1349 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:13 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29032660..29034008 1..1349 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:13 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29032660..29034008 1..1349 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:00 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24858382..24859730 1..1349 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:09 Download gff for RE31995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28773491..28774839 1..1349 99   Minus

RE31995.pep Sequence

Translation from 89 to 1060

> RE31995.pep
MFVRLWVRSFHKYDLLIAIGLITLIVYLCLPFRFASHYDYIEESKIEGAL
VPQVTRNVSQQEVFECTYSEIIAENRFVYHLAHYHDAVQRGAEIRPGGEF
RPEGCQARYSTAIIVPYRQREEQLHAFLTYMHNYLPQQLIHYRIFLVEQF
DHKPFNRAMLFNIGAQVAAEYGFPCLILHDVDLLPLNSGQIYACSERPRH
MSSALDHWRFRLPYRGLFGGVVAINTAQYQQINGMSNLYYGWGGEDDDLY
ERLQALNIDICRFAMEFSKYTMLKHKQEQPNANRVALLRSATLRQHADGL
NSLVYTEMERRMHSLFTHILVDT*

RE31995.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18727-PA 323 GF18727-PA 1..323 1..323 1465 84.3 Plus
Dana\GF13490-PA 391 GF13490-PA 151..383 91..322 556 44.2 Plus
Dana\beta4GalT7-PA 318 GF16319-PA 68..223 106..262 266 35.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12042-PA 323 GG12042-PA 1..323 1..323 1655 95.4 Plus
Dere\GG20439-PA 403 GG20439-PA 163..395 91..322 563 45.5 Plus
Dere\beta4GalT7-PA 322 GG11346-PA 73..227 107..262 224 35.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23682-PA 322 GH23682-PA 1..322 1..323 1145 67.8 Plus
Dgri\GH21793-PA 410 GH21793-PA 170..385 91..305 553 47.2 Plus
Dgri\GH22239-PA 310 GH22239-PA 61..215 107..262 268 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTB-PA 323 CG14517-PA 1..323 1..323 1719 100 Plus
beta4GalNAcTA-PA 403 CG8536-PA 163..395 91..322 551 45.5 Plus
beta4GalT7-PA 322 CG11780-PA 75..227 109..262 273 35.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24526-PA 322 GI24526-PA 1..322 1..323 1183 66.6 Plus
Dmoj\GI20541-PA 406 GI20541-PA 166..381 91..305 539 45.4 Plus
Dmoj\beta4GalT7-PA 309 GI22222-PA 59..214 106..262 261 34.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23283-PA 322 GL23283-PA 1..322 1..323 1286 74.3 Plus
Dper\GL10126-PA 196 GL10126-PA 2..188 137..322 439 44.4 Plus
Dper\GL24409-PA 569 GL24409-PA 320..474 107..262 260 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13048-PA 322 GA13048-PA 1..322 1..323 1297 75.2 Plus
Dpse\GA21145-PA 399 GA21145-PA 159..374 91..305 546 45.8 Plus
Dpse\GA11195-PA 321 GA11195-PA 72..226 107..262 258 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12269-PA 323 GM12269-PA 1..323 1..323 1656 95.7 Plus
Dsec\GM21525-PA 403 GM21525-PA 163..395 91..322 561 45.5 Plus
Dsec\beta4GalT7-PA 195 GM17784-PA 72..195 107..231 168 32.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18000-PA 323 GD18000-PA 1..323 1..323 1683 96.6 Plus
Dsim\GD11035-PA 414 GD11035-PA 163..406 91..322 540 43.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22594-PA 322 GJ22594-PA 1..322 1..323 1182 67.5 Plus
Dvir\GJ22392-PA 406 GJ22392-PA 166..381 91..305 548 46.3 Plus
Dvir\GJ24343-PA 308 GJ24343-PA 58..271 106..316 268 30.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22603-PA 316 GK22603-PA 2..316 7..323 1262 73.2 Plus
Dwil\GK20782-PA 384 GK20782-PA 144..376 91..322 547 44.2 Plus
Dwil\GK14189-PA 319 GK14189-PA 70..224 107..262 249 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10481-PA 323 GE10481-PA 1..323 1..323 1663 95.7 Plus
Dyak\GE13570-PA 403 GE13570-PA 163..395 91..322 561 45.5 Plus
Dyak\beta4GalT7-PA 322 GE23542-PA 75..276 109..305 265 31.9 Plus

RE31995.hyp Sequence

Translation from 89 to 1060

> RE31995.hyp
MFVRLWVRSFHKYDLLIAIGLITLIVYLCLPFRFASHYDYIEESKIEGAL
VPQVTRNVSQQEVFECTYSEIIAENRFVYHLAHYHDAVQRGAEIRPGGEF
RPEGCQARYSTAIIVPYRQREEQLHAFLTYMHNYLPQQLIHYRIFLVEQF
DHKPFNRAMLFNIGAQVAAEYGFPCLILHDVDLLPLNSGQIYACSERPRH
MSSALDHWRFRLPYRGLFGGVVAINTAQYQQINGMSNLYYGWGGEDDDLY
ERLQALNIDICRFAMEFSKYTMLKHKQEQPNANRVALLRSATLRQHADGL
NSLVYTEMERRMHSLFTHILVDT*

RE31995.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTB-PA 323 CG14517-PA 1..323 1..323 1719 100 Plus
beta4GalNAcTA-PA 403 CG8536-PA 163..395 91..322 551 45.5 Plus
beta4GalT7-PA 322 CG11780-PA 75..227 109..262 273 35.9 Plus