Clone RE32047 Report

Search the DGRC for RE32047

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:320
Well:47
Vector:pFlc-1
Associated Gene/TranscriptCG2812-RA
Protein status:RE32047.pep: gold
Preliminary Size:1291
Sequenced Size:1338

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2812 2002-01-01 Sim4 clustering to Release 2
CG2812 2003-01-01 Sim4 clustering to Release 3
CG2812 2003-08-11 Blastp of sequenced clone
CG2812 2008-04-29 Release 5.5 accounting
CG2812 2008-08-15 Release 5.9 accounting
CG2812 2008-12-18 5.12 accounting

Clone Sequence Records

RE32047.complete Sequence

1338 bp (1338 high quality bases) assembled on 2003-08-11

GenBank Submission: BT011095

> RE32047.complete
ACTTTTGTTATTTCAACCGTGGCGAGTTGTACGTTCTATTACCTCGGATG
GCTTAGAAACTGTGTGGTCGAAACAGAAACGATCCAAGCTCCAGAAAATA
CTCGAAATAAGTGTGAAAAACTGTATAGATCCTCGGAAAATACACCATTC
ATGAATCCGGAATCGAGGGACCTGGATTTGAGAAAGGGCGATGTCGAGAG
GCCGCACTTCGAGGCGGTTACCACACTGTCCGACTCGCAGGCGATCCGGA
GCGTCGACTTTCATCCGAATGGAAAGTTGTACGCGGTGGGCTCCAACTCC
AAGACCTTCCGCATCTGCCAGTACCCCGCGCTGTCCAAGCTGAGACATGG
ACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTCTGCAAGCGCACGAAAC
ACCATCGGGGCTCCATATACTGCACCTGCTGGTCACGGGATGGGGAGCTA
ATTGCCACCGGATCGAACGACAAGACCATCAAGTACATGCGCTTCAACAA
CGACACCAACCAGCTGGTGGGACACGAGATGGAGCTGAACATGCACGACG
GCACGGTGCGGGACATGTGCTTCCTGGACGACTCGTCCACCAAGTCCCGG
CTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGATCTACATCACAGACTG
CGGAACCGGCACTCCCTTCCAGGCCTACAGTGGTCATACTGGCCACATCC
TGTCCCTCTACAGCTGGAACAACGCGATGTTCGTGTCGGGATCGCAGGAT
CAAACGATACGTTTCTGGGATCTGCGAGTGAATGTCTCTGTGAATACGCT
GGATAACGATCGAAAGGATGGTGGTCTGGAGAGCTCCGCTGTAACCGCGG
TCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTCTGGGCACGCTGACAGC
TCCTGTACTCTGTACGACATCCGTGGCAACCGGCCCATTCAGCGCTTCTA
TCCGCACACCGCTGAAATAAGGTGCGTCCGATTCTCCCCATCCGCCTACT
ACATGCTGACGTGCAGCTACGACAACTCGATCCGGCTGACGGACCTGCAA
GGCGACCTGGCCCACGAGCTGTCCTCCGTGGTGGTGGCGGAGCACAAGGA
CAAGGCCATCACCATCCGATGGCATCCGACCGAGTTCTCCTTCATCTCCA
CGTCGGCGGACAAGACGGCCACCCTCTGGGCGCTGCCGCCCTCGTAGCTC
CGTGGTCCAATGTTCCGGTCCAGTGGCGGCTTTAAATTCGTTGTCGATAT
TGTACTTCCGCAGAATAGTTCAGACTGATCTAATTTATTGAATAAACCCA
TTCCAACAGATAAAGGAAAAAGAAAAAAAAAAAAAAAA

RE32047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1328 CG2812-RA 6..1325 1..1320 6600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19811848..19812253 343..748 2015 99.8 Plus
chr2R 21145070 chr2R 19812599..19812950 969..1320 1760 100 Plus
chr2R 21145070 chr2R 19812315..19812543 745..973 1130 99.6 Plus
chr2R 21145070 chr2R 19811281..19811467 1..187 935 100 Plus
chr2R 21145070 chr2R 19811622..19811781 185..344 785 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 343..748 2030 100 Plus
2R 25286936 2R 23926558..23926914 969..1325 1770 99.7 Plus
2R 25286936 2R 23926274..23926502 745..973 1145 100 Plus
2R 25286936 2R 23925239..23925425 1..187 935 100 Plus
2R 25286936 2R 23925580..23925739 185..344 800 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23927006..23927411 343..748 2030 100 Plus
2R 25260384 2R 23927757..23928113 969..1325 1770 99.7 Plus
2R 25260384 2R 23927473..23927701 745..973 1145 100 Plus
2R 25260384 2R 23926438..23926624 1..187 935 100 Plus
2R 25260384 2R 23926779..23926938 185..344 800 100 Plus
Blast to na_te.dros performed 2019-03-15 16:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 467..510 121 75 Plus

RE32047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:26:35 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19811281..19811466 1..186 100 -> Plus
chr2R 19811624..19811781 187..344 99 -> Plus
chr2R 19811850..19812252 345..747 99 -> Plus
chr2R 19812318..19812541 748..971 99 -> Plus
chr2R 19812602..19812950 972..1322 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:34 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 151..1197 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:52:30 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 151..1197 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:01:52 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 151..1197 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:16 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 151..1197 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:54 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 151..1197 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:05 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1321 1..1321 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:52:30 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1321 1..1321 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:52 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 4..1325 1..1322 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:16 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1321 1..1321 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:54 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 4..1325 1..1322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:35 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23925239..23925424 1..186 100 -> Plus
2R 23925582..23925739 187..344 100 -> Plus
2R 23925809..23926211 345..747 100 -> Plus
2R 23926277..23926500 748..971 100 -> Plus
2R 23926561..23926911 972..1322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:35 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23925239..23925424 1..186 100 -> Plus
2R 23925582..23925739 187..344 100 -> Plus
2R 23925809..23926211 345..747 100 -> Plus
2R 23926277..23926500 748..971 100 -> Plus
2R 23926561..23926911 972..1322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:35 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23925239..23925424 1..186 100 -> Plus
2R 23925582..23925739 187..344 100 -> Plus
2R 23925809..23926211 345..747 100 -> Plus
2R 23926277..23926500 748..971 100 -> Plus
2R 23926561..23926911 972..1322 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:52 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19812762..19812947 1..186 100 -> Plus
arm_2R 19813105..19813262 187..344 100 -> Plus
arm_2R 19813332..19813734 345..747 100 -> Plus
arm_2R 19813800..19814023 748..971 100 -> Plus
arm_2R 19814084..19814434 972..1322 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:27 Download gff for RE32047.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23927026..23927428 345..747 100 -> Plus
2R 23927494..23927717 748..971 100 -> Plus
2R 23927778..23928128 972..1322 99   Plus
2R 23926456..23926641 1..186 100 -> Plus
2R 23926799..23926956 187..344 100 -> Plus

RE32047.hyp Sequence

Translation from 0 to 1196

> RE32047.hyp
TFVISTVASCTFYYLGWLRNCVVETETIQAPENTRNKCEKLYRSSENTPF
MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNS
KTFRICQYPALSKLRHGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGEL
IATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSR
LLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQD
QTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTGRLLVSGHADS
SCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQ
GDLAHELSSVVVAEHKDKAITIRWHPTEFSFISTSADKTATLWALPPS*

RE32047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 348 CG2812-PA 1..348 51..398 1868 100 Plus
CG3436-PC 347 CG3436-PC 54..301 135..393 215 25.3 Plus
CG3436-PA 347 CG3436-PA 54..301 135..393 215 25.3 Plus
wds-PB 361 CG17437-PB 59..357 67..393 194 24 Plus
wds-PA 361 CG17437-PA 59..357 67..393 194 24 Plus

RE32047.pep Sequence

Translation from 150 to 1196

> RE32047.pep
MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNS
KTFRICQYPALSKLRHGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGEL
IATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSR
LLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQD
QTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTGRLLVSGHADS
SCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQ
GDLAHELSSVVVAEHKDKAITIRWHPTEFSFISTSADKTATLWALPPS*

RE32047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12876-PA 348 GF12876-PA 1..348 1..348 1777 93.1 Plus
Dana\GF20700-PA 347 GF20700-PA 54..301 85..343 204 24.9 Plus
Dana\GF22217-PA 361 GF22217-PA 59..357 17..343 189 24.3 Plus
Dana\GF13988-PA 579 GF13988-PA 293..575 32..343 181 23.9 Plus
Dana\GF19640-PA 784 GF19640-PA 7..218 122..345 166 25.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22904-PA 348 GG22904-PA 1..348 1..348 1854 98.6 Plus
Dere\GG24701-PA 347 GG24701-PA 54..301 85..343 216 25.7 Plus
Dere\GG12938-PA 361 GG12938-PA 59..357 17..343 190 24.3 Plus
Dere\GG13777-PA 390 GG13777-PA 18..257 29..299 165 23.2 Plus
Dere\GG19653-PA 1056 GG19653-PA 12..346 28..337 165 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20187-PA 343 GH20187-PA 1..343 1..348 1567 82.5 Plus
Dgri\GH11537-PA 347 GH11537-PA 54..301 85..343 209 25.3 Plus
Dgri\GH24921-PA 357 GH24921-PA 55..353 17..343 191 24.3 Plus
Dgri\GH22022-PA 358 GH22022-PA 106..340 85..336 178 26.9 Plus
Dgri\GH25232-PA 247 GH25232-PA 38..201 178..343 170 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 348 CG2812-PA 1..348 1..348 1868 100 Plus
CG3436-PC 347 CG3436-PC 54..301 85..343 215 25.3 Plus
CG3436-PA 347 CG3436-PA 54..301 85..343 215 25.3 Plus
wds-PB 361 CG17437-PB 59..357 17..343 194 24 Plus
wds-PA 361 CG17437-PA 59..357 17..343 194 24 Plus
Gbeta76C-PA 346 CG8770-PA 104..345 89..343 174 24.2 Plus
CG3909-PA 331 CG3909-PA 80..328 81..348 172 24.7 Plus
ebi-PA 700 CG4063-PA 344..612 75..343 170 23.9 Plus
Poc1-PA 391 CG10191-PA 18..297 29..343 167 22.4 Plus
Poc1-PB 403 CG10191-PB 18..297 29..343 167 22.4 Plus
slmb-PC 510 CG3412-PC 206..487 81..343 166 25.5 Plus
slmb-PA 510 CG3412-PA 206..487 81..343 166 25.5 Plus
slmb-PB 597 CG3412-PB 206..487 81..343 166 25.5 Plus
Gbeta13F-PH 340 CG10545-PH 96..291 86..292 164 28.3 Plus
Gbeta13F-PG 340 CG10545-PG 96..291 86..292 164 28.3 Plus
Gbeta13F-PF 340 CG10545-PF 96..291 86..292 164 28.3 Plus
Gbeta13F-PE 340 CG10545-PE 96..291 86..292 164 28.3 Plus
Gbeta13F-PC 340 CG10545-PC 96..291 86..292 164 28.3 Plus
Gbeta13F-PA 340 CG10545-PA 96..291 86..292 164 28.3 Plus
CG10931-PA 345 CG10931-PA 55..251 132..343 163 26.3 Plus
Tango4-PA 482 CG1796-PA 159..362 73..292 163 26.1 Plus
U4-U6-60K-PA 553 CG6322-PA 325..550 101..344 160 25.6 Plus
Wdr33-PB 807 CG1109-PB 142..386 82..343 159 24.2 Plus
Wdr33-PA 807 CG1109-PA 142..386 82..343 159 24.2 Plus
Lis-1-PG 411 CG8440-PG 169..407 5..296 155 23.5 Plus
Lis-1-PF 411 CG8440-PF 169..407 5..296 155 23.5 Plus
Lis-1-PB 411 CG8440-PB 169..407 5..296 155 23.5 Plus
Lis-1-PA 411 CG8440-PA 169..407 5..296 155 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20715-PA 337 GI20715-PA 1..337 10..348 1505 80.8 Plus
Dmoj\GI17028-PA 347 GI17028-PA 54..301 85..343 217 26 Plus
Dmoj\GI21774-PA 358 GI21774-PA 56..354 17..343 190 24.3 Plus
Dmoj\GI16203-PA 981 GI16203-PA 12..348 28..339 168 26.3 Plus
Dmoj\GI11805-PA 346 GI11805-PA 109..345 94..343 167 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11179-PA 348 GL11179-PA 1..348 1..348 1748 91.7 Plus
Dper\GL18847-PA 347 GL18847-PA 54..301 85..343 222 26 Plus
Dper\GL13093-PA 356 GL13093-PA 54..352 17..343 190 24.3 Plus
Dper\GL25365-PA 413 GL25365-PA 53..257 79..299 171 24.3 Plus
Dper\GL21559-PA 413 GL21559-PA 53..257 79..299 168 24.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15470-PA 348 GA15470-PA 1..348 1..348 1752 91.7 Plus
Dpse\GA17451-PA 347 GA17451-PA 54..301 85..343 222 26 Plus
Dpse\GA14510-PA 356 GA14510-PA 54..352 17..343 190 24.3 Plus
Dpse\GA26333-PB 299 GA26333-PB 53..257 79..299 168 24.8 Plus
Dpse\GA10144-PA 413 GA10144-PA 53..257 79..299 167 24.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16064-PA 348 GM16064-PA 1..348 1..348 1867 99.1 Plus
Dsec\GM16719-PA 347 GM16719-PA 54..301 85..343 210 25.3 Plus
Dsec\GM19230-PA 361 GM19230-PA 59..357 17..343 190 24.3 Plus
Dsec\GM24599-PA 389 GM24599-PA 18..257 29..299 172 24.3 Plus
Dsec\GM23851-PA 332 GM23851-PA 81..329 81..348 166 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15453-PA 286 GD15453-PA 22..286 84..348 1428 100 Plus
Dsim\GD23005-PA 347 GD23005-PA 54..301 85..343 210 25.3 Plus
Dsim\GD16610-PA 361 GD16610-PA 59..357 17..343 190 24.3 Plus
Dsim\GD12669-PA 389 GD12669-PA 53..257 79..299 174 25.2 Plus
Dsim\GD18659-PA 332 GD18659-PA 81..329 81..348 169 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20455-PA 358 GJ20455-PA 12..358 1..348 1470 78.6 Plus
Dvir\GJ24581-PA 347 GJ24581-PA 54..301 85..343 209 24.9 Plus
Dvir\GJ16947-PA 358 GJ16947-PA 56..354 17..343 190 24.3 Plus
Dvir\GJ23285-PA 510 GJ23285-PA 206..487 81..343 166 25.8 Plus
Dvir\GJ15893-PA 991 GJ15893-PA 12..348 28..339 165 24.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15716-PA 344 GK15716-PA 1..344 1..348 1642 85.6 Plus
Dwil\GK23911-PA 347 GK23911-PA 54..301 85..343 219 27.9 Plus
Dwil\GK19997-PA 358 GK19997-PA 56..354 17..343 190 24.3 Plus
Dwil\GK25250-PA 819 GK25250-PA 7..218 122..345 176 24.3 Plus
Dwil\GK13501-PA 512 GK13501-PA 208..489 81..343 166 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14342-PA 348 GE14342-PA 1..348 1..348 1845 98.3 Plus
Dyak\GE16626-PA 347 GE16626-PA 54..301 85..343 213 25.7 Plus
Dyak\GE16263-PA 361 GE16263-PA 59..357 17..343 190 24.3 Plus
Dyak\GE20071-PA 391 GE20071-PA 53..257 79..299 169 24.8 Plus
Dyak\GE25013-PA 487 GE25013-PA 183..464 81..343 164 25.8 Plus