Clone RE32514 Report

Search the DGRC for RE32514

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:325
Well:14
Vector:pFlc-1
Associated Gene/Transcriptgalectin-RA
Protein status:RE32514.pep: gold
Preliminary Size:1517
Sequenced Size:1851

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11372 2001-12-16 Blastp of sequenced clone
CG11372 2002-01-01 Sim4 clustering to Release 2
CG11372 2003-01-01 Sim4 clustering to Release 3
galectin 2008-04-29 Release 5.5 accounting
galectin 2008-08-15 Release 5.9 accounting
galectin 2008-12-18 5.12 accounting

Clone Sequence Records

RE32514.complete Sequence

1851 bp (1851 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071294

> RE32514.complete
AGTCCGCTCACAAACCGCTGCTAAAGGCACACGTATTTTGGCTTTCAGAT
GCATACATACATACATGTGTATGTATATATGTATTCAGCCAAAAAAAATC
TCGTACATTAAAGCGCGCTGAATTGCACCAAAAGAGCGAGAGAGCGTATA
AGCTCCGTGCTCAAAACCGCATTTGCATCGGGTAAAATCGGTAACCCCAT
CTTTGCATAGTCAGTATGACGGCAATAATACTCCTGGCTTGCCACTCGGT
TCGCGAACTCGTCGATCTGTCAGATGCTCTGTGGCAGAACACTTTTAATA
TCGAACGAAGTTTAAACTATTATCGCATCAAGCGCCGTTTGGAACTGTTT
CGATTTCATTGCCGCGAGCTTTGGTTGCGTCAGGTGTCAAAAACATCCGA
TCCAATGCATCGGAAGGCAGGCATAGATTTTGCAGCCATTGAGGCGGGTG
CAGACTGTGTCCTAAATATGGATGCCTTTGACGATACGACAACGGAACTA
CACAAGAGGTTTTTACAGGCGGAGGGCACAAGACCCTTTCCTTCGGATTG
CATCAGCGGCATCGAGGTGGTGGATGGAAATGAATTTAAAGCCTCATTTT
ACGAATATGCAGATGCTGTGCCAAAATATTTTAACGACCAAATAGGGAAA
TTGAGCGAAGGGATAAGTTTCACGGTGACTGGGAATCTCTCTGTAAACTG
CGAGAGGTTTTCCATCAATCTGGTTTATAACAATGACTCTCGAGATGTGG
CGCTCCACATTAATCCACGGTTGCCACAAAACTATATTGTCCGCAACACC
AAAGTACAGGACATTTGGGGAAACGAGGAAGTGTCCTCGGCATTGCCGTT
TCTACTAAGTCGAGGCGAGGAGTTTTCCATTCAAGTGCTAGTTACTGAGG
CATGCTATATGATATCGGTAAACGGACAACACTTTGCAGCGTACACTCAT
CGAATCCCTTATAGGGATGTTCGCATTCTGGAAGTGAAGGGAGATGTAAG
TAACGTGGAAATGAAGCGAACTTTGGTCTTAAAATATCCTGAGCGATTAC
CCCAGTCAGAGGCTAATAACATTGAGCTTCACATAGATGATGGGATTAAT
GAAATTGATGCCAGCGTTGAGGAGACTGTTAAAATACCTCATGAGTGGTG
CATTATTAGCGCCCCGAACACACAGTCGGACAGTTCGCCTAAGCGTAACA
ATAGTTCGAATGATCTTGGCCTTACTTTGCCTTATTATGGAGCATTGCCA
CCAAATTCGTTGGTCGATGGTCGATGCTTGAAGATTGAAGGGAGAGTGCG
ATTACTTCCCCACTCGTTTTATATAAACCTGCAACAGGGGCAGGACATAT
GGCCACATCCAGTAATTGCATTCCACTTAAACCCACGTTTTTCGAAAGCA
AGCAGCGGCGCTATTGGAAAGGCGGTGGTGTGTAGGAATGCCTGGCTTAA
TGGAGCTTGGGCACAAGAAGAGCGTTCGGAGTTTGACACAAACTTTCGCC
CTGGTCGGTCTTTTTGTTTAGCCATTGTTTGTACCAAAACATCCTTTGAG
GTGTATGTCAATCGGCAGTTTATGACTGATTTTAAATATAAGGTTAGCCC
TGAGGTGGTGGACACTGTCTACATACAAGGAGATGTTAAACTTTGGAATG
TAACGCTGGAAAAAAATCAGATGATTAAAGGCAAAAATATGCGAGTCTAT
CAGAATCCGTGGTTCTTTAGTGAGTAGTAGCTGTTCATGTTTTTATTTTT
TAGTAGTTTAGCGACAATAAAAAAGTGATACGCTCGTGTTTCATTATACA
ATATTTTTGTTAATAAATAAAATTATGGTAACGTCAAAAAAAAAAAAAAA
A

RE32514.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
galectin.g 2651 galectin.g 1153..2586 403..1836 6810 98.3 Plus
galectin.d 2693 galectin.d 1195..2628 403..1836 6810 98.3 Plus
galectin.f 3672 galectin.f 2423..3668 591..1836 6230 100 Plus
galectin.f 3672 galectin.f 238..828 1..591 2955 100 Plus
galectin.g 2651 galectin.g 36..626 1..591 2955 100 Plus
galectin.d 2693 galectin.d 78..668 1..591 2955 100 Plus
galectin.f 3672 galectin.f 1355..1543 403..591 585 87.3 Plus
galectin.f 3672 galectin.f 1260..1320 255..315 185 86.8 Plus
galectin.g 2651 galectin.g 1058..1118 255..315 185 86.8 Plus
galectin.d 2693 galectin.d 1100..1160 255..315 185 86.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 75090..76220 705..1835 5655 100 Plus
chr2L 23010047 chr2L 72402..72992 1..591 2940 99.8 Plus
chr2L 23010047 chr2L 74917..75034 591..708 590 100 Plus
chr2L 23010047 chr2L 73519..73707 403..591 585 87.3 Plus
chr2L 23010047 chr2L 73424..73484 255..315 185 86.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 75076..76207 705..1836 5660 100 Plus
2L 23513712 2L 72388..72978 1..591 2955 100 Plus
2L 23513712 2L 74903..75020 591..708 590 100 Plus
2L 23513712 2L 73505..73693 403..591 585 87.3 Plus
2L 23513712 2L 73410..73470 255..315 185 86.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 75076..76207 705..1836 5660 100 Plus
2L 23513712 2L 72388..72978 1..591 2955 100 Plus
2L 23513712 2L 74903..75020 591..708 590 100 Plus
2L 23513712 2L 73505..73693 403..591 585 87.3 Plus
2L 23513712 2L 73410..73470 255..315 185 86.8 Plus
Blast to na_te.dros performed 2019-03-16 21:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 66..129 94..32 155 73.4 Minus
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 4378..4441 94..32 146 71.9 Minus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 712..765 25..78 117 73.2 Plus

RE32514.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:09:21 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 72402..72991 1..590 99 -> Plus
chr2L 74917..75032 591..706 100 -> Plus
chr2L 75092..76220 707..1835 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:49 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1512 216..1727 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:11 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1512 216..1727 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:49 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1512 216..1727 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:45 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1512 216..1727 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:46 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1512 216..1727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:27:24 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1832 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:10 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1835 1..1835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:49 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 2..1836 1..1835 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:46 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 1..1832 1..1832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:46 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
galectin-RA 2..1836 1..1835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:09:21 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
2L 72388..72977 1..590 100 -> Plus
2L 74903..75018 591..706 100 -> Plus
2L 75078..76206 707..1835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:09:21 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
2L 72388..72977 1..590 100 -> Plus
2L 74903..75018 591..706 100 -> Plus
2L 75078..76206 707..1835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:09:21 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
2L 72388..72977 1..590 100 -> Plus
2L 74903..75018 591..706 100 -> Plus
2L 75078..76206 707..1835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:49 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 72388..72977 1..590 100 -> Plus
arm_2L 74903..75018 591..706 100 -> Plus
arm_2L 75078..76206 707..1835 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:20 Download gff for RE32514.complete
Subject Subject Range Query Range Percent Splice Strand
2L 72388..72977 1..590 100 -> Plus
2L 74903..75018 591..706 100 -> Plus
2L 75078..76206 707..1835 100   Plus

RE32514.pep Sequence

Translation from 215 to 1726

> RE32514.pep
MTAIILLACHSVRELVDLSDALWQNTFNIERSLNYYRIKRRLELFRFHCR
ELWLRQVSKTSDPMHRKAGIDFAAIEAGADCVLNMDAFDDTTTELHKRFL
QAEGTRPFPSDCISGIEVVDGNEFKASFYEYADAVPKYFNDQIGKLSEGI
SFTVTGNLSVNCERFSINLVYNNDSRDVALHINPRLPQNYIVRNTKVQDI
WGNEEVSSALPFLLSRGEEFSIQVLVTEACYMISVNGQHFAAYTHRIPYR
DVRILEVKGDVSNVEMKRTLVLKYPERLPQSEANNIELHIDDGINEIDAS
VEETVKIPHEWCIISAPNTQSDSSPKRNNSSNDLGLTLPYYGALPPNSLV
DGRCLKIEGRVRLLPHSFYINLQQGQDIWPHPVIAFHLNPRFSKASSGAI
GKAVVCRNAWLNGAWAQEERSEFDTNFRPGRSFCLAIVCTKTSFEVYVNR
QFMTDFKYKVSPEVVDTVYIQGDVKLWNVTLEKNQMIKGKNMRVYQNPWF
FSE*

RE32514.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15050-PA 497 GF15050-PA 1..496 1..503 1930 70.2 Plus
Dana\GF15051-PA 389 GF15051-PA 33..367 149..484 657 38 Plus
Dana\GF11976-PA 321 GF11976-PA 14..159 142..285 152 28.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24692-PA 503 GG24692-PA 1..503 1..503 2463 90.5 Plus
Dere\GG13329-PA 1348 GG13329-PA 813..950 339..479 155 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11722-PA 495 GH11722-PA 1..494 1..503 1677 61.9 Plus
Dgri\GH11723-PA 386 GH11723-PA 44..374 149..486 673 39.4 Plus
Dgri\GH14254-PA 2613 GH14254-PA 215..380 113..278 457 50 Plus
Dgri\GH20302-PA 321 GH20302-PA 14..157 142..283 157 27.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
galectin-PA 503 CG11372-PA 1..503 1..503 2664 100 Plus
galectin-PE 419 CG11372-PE 1..419 85..503 2150 97.1 Plus
galectin-PB 402 CG11372-PB 24..402 125..503 2006 99.7 Plus
galectin-PD 401 CG11372-PD 24..401 126..503 2005 100 Plus
galectin-PF 272 CG11372-PF 1..272 232..503 1454 100 Plus
CG11374-PC 401 CG11374-PC 44..381 149..493 640 39.6 Plus
Pex23-PA 1350 CG32226-PA 815..952 339..479 165 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16246-PA 488 GI16246-PA 1..482 1..498 1635 60.2 Plus
Dmoj\GI23146-PA 672 GI23146-PA 329..654 93..476 329 28.6 Plus
Dmoj\GI23146-PA 672 GI23146-PA 426..664 48..276 278 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16594-PA 503 GL16594-PA 1..502 1..503 2091 74.8 Plus
Dper\GL25042-PA 1348 GL25042-PA 814..951 339..479 159 31.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10954-PB 503 GA10954-PB 1..502 1..503 2091 74.8 Plus
Dpse\GA10955-PB 392 GA10955-PB 44..380 149..486 695 39.5 Plus
Dpse\GA16767-PA 1348 GA16767-PA 814..951 339..479 158 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16712-PA 503 GM16712-PA 1..503 1..503 2596 95.2 Plus
Dsec\GM22231-PA 1348 GM22231-PA 813..950 339..479 164 33.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22998-PA 503 GD22998-PA 1..503 1..503 2579 94.8 Plus
Dsim\GD12202-PA 1350 GD12202-PA 815..952 339..479 164 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16209-PA 489 GJ16209-PA 1..488 1..503 1719 63.1 Plus
Dvir\GJ16210-PA 390 GJ16210-PA 22..379 128..486 687 40.1 Plus
Dvir\GJ10448-PA 665 GJ10448-PA 355..652 134..486 400 30.3 Plus
Dvir\GJ10448-PA 665 GJ10448-PA 518..663 138..282 347 42.6 Plus
Dvir\GJ13532-PA 1349 GJ13532-PA 815..960 339..487 167 31.4 Plus
Dvir\GJ21223-PA 321 GJ21223-PA 14..140 142..265 152 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21075-PA 513 GK21075-PA 1..512 1..503 1769 64.1 Plus
Dwil\GK18874-PA 427 GK18874-PA 44..392 149..491 657 38.2 Plus
Dwil\GK17237-PA 1357 GK17237-PA 855..960 355..479 156 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16549-PA 502 GE16549-PA 1..502 1..503 2437 90.1 Plus
Dyak\GE22947-PA 1286 GE22947-PA 425..562 339..479 162 32.4 Plus
Dyak\GE22418-PA 1348 GE22418-PA 813..950 339..479 160 32.4 Plus

RE32514.hyp Sequence

Translation from 215 to 1726

> RE32514.hyp
MTAIILLACHSVRELVDLSDALWQNTFNIERSLNYYRIKRRLELFRFHCR
ELWLRQVSKTSDPMHRKAGIDFAAIEAGADCVLNMDAFDDTTTELHKRFL
QAEGTRPFPSDCISGIEVVDGNEFKASFYEYADAVPKYFNDQIGKLSEGI
SFTVTGNLSVNCERFSINLVYNNDSRDVALHINPRLPQNYIVRNTKVQDI
WGNEEVSSALPFLLSRGEEFSIQVLVTEACYMISVNGQHFAAYTHRIPYR
DVRILEVKGDVSNVEMKRTLVLKYPERLPQSEANNIELHIDDGINEIDAS
VEETVKIPHEWCIISAPNTQSDSSPKRNNSSNDLGLTLPYYGALPPNSLV
DGRCLKIEGRVRLLPHSFYINLQQGQDIWPHPVIAFHLNPRFSKASSGAI
GKAVVCRNAWLNGAWAQEERSEFDTNFRPGRSFCLAIVCTKTSFEVYVNR
QFMTDFKYKVSPEVVDTVYIQGDVKLWNVTLEKNQMIKGKNMRVYQNPWF
FSE*

RE32514.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
galectin-PA 503 CG11372-PA 1..503 1..503 2664 100 Plus
galectin-PE 419 CG11372-PE 1..419 85..503 2150 97.1 Plus
galectin-PB 402 CG11372-PB 24..402 125..503 2006 99.7 Plus
galectin-PD 401 CG11372-PD 24..401 126..503 2005 100 Plus
galectin-PF 272 CG11372-PF 1..272 232..503 1454 100 Plus