Clone RE32624 Report

Search the DGRC for RE32624

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:326
Well:24
Vector:pFlc-1
Associated Gene/TranscriptCG5861-RA
Protein status:RE32624.pep: gold
Preliminary Size:765
Sequenced Size:1118

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5861 2001-12-14 Blastp of sequenced clone
CG5861 2002-01-01 Sim4 clustering to Release 2
CG5861 2003-01-01 Sim4 clustering to Release 3
CG5861 2008-04-29 Release 5.5 accounting
CG5861 2008-08-15 Release 5.9 accounting
CG5861 2008-12-18 5.12 accounting

Clone Sequence Records

RE32624.complete Sequence

1118 bp (1118 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071295

> RE32624.complete
AGTGGCTACTTCTTTTCGTTCGGAAAGACACACGTTTTCCAATATTTCAA
AATATTTATTTATAATAGTTATTATTAAAATATTTATTGTAAAATATTGT
CTGCAAAACTAGCTTGTTTTTTATAGTCTGCCTGACATGCCGTCAGCCCT
GTTAAGCACATATCGATAACCCACGGCAAGCAACGCTAGTTTTTTTCTTT
TCAACTTTTAATTCTTCTCTTAATTAAGCCAAAATAAAATAGCCATAATT
TATCAAAGAAAATGACACTGTATCACTTTGGAAATTGTGTGGCCCTGCTG
ACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATATGGAGC
CTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACAGCTCG
TCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCATCCTCC
AGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATGGACAT
CGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGGCAAGG
GCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCGAAGTG
ATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACCGAGTT
CAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCTGGTGC
AGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACGATTTG
AACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACTGTCTT
CAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGGACCTT
GGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGATTCTGC
ACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTTAAGCAAT
TGTGCCAAACACTCTGTATTCCTTTGTTTTTGTAACTTGTTTATTTTTTG
GTGTTGTCAGAGAAATTGAGATTTTGTAACAAAGACAACAATTACGGTTT
AGAGAATTACTCCAAATGTTAATGAATTATAGCTACGATAACGTAATAGT
AACAAAAAAAAAAAAAAA

RE32624.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1173 CG5861-RA 15..1120 1..1106 5515 99.9 Plus
c(2)M-RA 2278 c(2)M-RA 2135..2278 1106..963 720 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16304663..16305182 1103..584 2600 100 Minus
chr2L 23010047 chr2L 16305803..16306137 335..1 1645 99.4 Minus
chr2L 23010047 chr2L 16305555..16305694 475..336 700 100 Minus
chr2L 23010047 chr2L 16305376..16305486 584..474 555 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305798..16306320 1106..584 2615 100 Minus
2L 23513712 2L 16306941..16307275 335..1 1660 99.7 Minus
2L 23513712 2L 16306693..16306832 475..336 700 100 Minus
2L 23513712 2L 16306514..16306624 584..474 555 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305798..16306320 1106..584 2615 100 Minus
2L 23513712 2L 16306941..16307275 335..1 1660 99.7 Minus
2L 23513712 2L 16306693..16306832 475..336 700 100 Minus
2L 23513712 2L 16306514..16306624 584..474 555 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:10:47 has no hits.

RE32624.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:45 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16304663..16305182 584..1103 100 <- Minus
chr2L 16305377..16305485 475..583 100 <- Minus
chr2L 16305556..16305694 336..474 100 <- Minus
chr2L 16305803..16306039 99..335 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:09:51 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 262..945 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:51 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 262..945 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:59:21 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 262..945 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:27 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 262..945 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:48 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 262..945 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:09:25 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:51 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:59:21 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 24..1126 1..1103 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:27 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:48 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 24..1126 1..1103 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:45 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16305801..16306320 584..1103 100 <- Minus
2L 16306515..16306623 475..583 100 <- Minus
2L 16306694..16306832 336..474 100 <- Minus
2L 16306941..16307275 1..335 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:45 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16305801..16306320 584..1103 100 <- Minus
2L 16306515..16306623 475..583 100 <- Minus
2L 16306694..16306832 336..474 100 <- Minus
2L 16306941..16307275 1..335 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:45 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16305801..16306320 584..1103 100 <- Minus
2L 16306515..16306623 475..583 100 <- Minus
2L 16306694..16306832 336..474 100 <- Minus
2L 16306941..16307275 1..335 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:59:21 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305801..16306320 584..1103 100 <- Minus
arm_2L 16306515..16306623 475..583 100 <- Minus
arm_2L 16306694..16306832 336..474 100 <- Minus
arm_2L 16306941..16307275 1..335 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:21:26 Download gff for RE32624.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16305801..16306320 584..1103 100 <- Minus
2L 16306515..16306623 475..583 100 <- Minus
2L 16306694..16306832 336..474 100 <- Minus
2L 16306941..16307275 1..335 99   Minus

RE32624.pep Sequence

Translation from 261 to 944

> RE32624.pep
MTLYHFGNCVALLTPYYFTYKYSGLSEYGAFWKCVQAGGIYIFTQLVKML
VLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSK
LITAGLGWATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLVQHIT
TATLIWLFTRHDLNKALKPLVSLLLAVTVFKGVWLEGMLHILTIGPWLTV
AVKALVAAVIGFCTLHIYSGLAQQIGI*

RE32624.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15326-PA 228 GF15326-PA 1..228 1..227 1132 95.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24174-PA 227 GG24174-PA 1..227 1..227 1170 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11431-PA 227 GH11431-PA 1..227 1..227 1092 91.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 227 CG5861-PA 1..227 1..227 1183 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14704-PA 227 GI14704-PA 1..227 1..227 1081 89.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14091-PA 228 GL14091-PA 1..228 1..227 1112 93.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19185-PA 228 GA19185-PA 1..228 1..227 1112 93.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17912-PA 227 GM17912-PA 1..227 1..227 1177 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21922-PA 202 GD21922-PA 1..202 1..227 1015 89 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17164-PA 227 GJ17164-PA 1..227 1..227 1093 90.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23717-PA 228 GK23717-PA 1..228 1..227 1085 91.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19368-PA 227 GE19368-PA 1..227 1..227 1168 99.1 Plus

RE32624.hyp Sequence

Translation from 261 to 944

> RE32624.hyp
MTLYHFGNCVALLTPYYFTYKYSGLSEYGAFWKCVQAGGIYIFTQLVKML
VLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSK
LITAGLGWATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLVQHIT
TATLIWLFTRHDLNKALKPLVSLLLAVTVFKGVWLEGMLHILTIGPWLTV
AVKALVAAVIGFCTLHIYSGLAQQIGI*

RE32624.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 227 CG5861-PA 1..227 1..227 1183 100 Plus