BDGP Sequence Production Resources |
Search the DGRC for RE32823
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 328 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ef1gamma-RA |
Protein status: | RE32823.pep: gold |
Preliminary Size: | 1721 |
Sequenced Size: | 1731 |
Gene | Date | Evidence |
---|---|---|
CG11901 | 2002-10-12 | Blastp of sequenced clone |
CG11901 | 2003-01-01 | Sim4 clustering to Release 3 |
Ef1gamma | 2008-04-29 | Release 5.5 accounting |
Ef1gamma | 2008-08-15 | Release 5.9 accounting |
Ef1gamma | 2008-12-18 | 5.12 accounting |
1731 bp (1731 high quality bases) assembled on 2002-10-12
GenBank Submission: BT001612
> RE32823.complete GGGTGCTCCGCGTTTTTTCGCTGAATTTGCCACTATATCGTATTTAATAC TGTATTTGCAGGCAGACGATTTAAACGGCGAATCCACCATGGTGAAAGGA ACTCTGTACACTTACCCCGAGAACTTCCGGGCCTACAAGGCGCTCATCGC AGCCCAGTACTCCGGAGCCCAGGTGAAAGTGGCCGACAACTTCAAGTTCG GCGAGACCAACAAGTCGGCTGAGTTCCTCAAGAAGTTCCCCGGTGGCAAG GTACCCGCCTTTGAGACCGCCGAAGGACAGTACTTGAGCGAGTCCAATGC CATCGCCTACCTGCTGGCCAACGAGCAGCTGCGCGGCGGAAAGTGCCCCT TCGTGCAGGCCCAGGTCCAGCAGTGGATCTCCTTCGCCGACAACGAGATT GTGCCTGCCTCCTGTGCCTGGGTCTTCCCCCTGCTGGGCATTCTGCCGCA GCAGAAGAACAGCACTGCCAAGCAAGAGGCCGAGGCTGTGCTGCAGCAGC TCAACCAGAAGCTGCAGGACGCCACCTTCCTGGCCGGCGAGAGGATCACA TTGGCCGACATTGTGGTCTTCAGCAGTCTGCTCCACCTGTACGAGTACGT CCTGGAGCCCAGTGTGCGCAGTGCCTTCGGCAACGTGAACCGCTGGTTCG TCACCATCCTCAACCAGAAGCAGGTCCAGGCCGTCGTCAAGGACTACAAG CTGTGCGAGAAGGCCCTGGTCTTCGACCCCAAGAAGTACGCCGAGTTCCA GGCCAAGACCGGAGCCGCCAAGCCCCAGCAGCAGGCTCAGCAGCAGAAGC AGGAGAAGAAGCCCAAGGAAAAGAAGGAGGCGCCCAAGAAGGCTGCCGAG CCCGCCGAGGAGTTGGACGCCGCCGATGAGGCCCTGGCCGCCGAGCCCAA GTCCAAGGACCCCTTCGATGCGCTGCCCAAGGGCACCTTCAACTTCGATG ACTTCAAGCGCGTGTACTCCAACGAGGACGAGGCCAAGTCCATTCCCTAC TTCTTCGATAAGTTCGATGCCGAGAACTACTCGATCTGGTTTGGCGAGTA CAAATACAACGAGGAGCTGTCCAAGGTGTTCATGTCGTGCAATCTCATCA CCGGCATGTTCCAGCGTCTGGACAAGATGCGCAAGGCGGCCTTCGCCTCC GTTTGCCTGTTCGGCGAGGACGGCAACAGCACCATCTCCGGTATCTGGGT GTGGCGCGGACAGGATCTGGCCTTCACGCTCTCCCCCGACTGGCAGATCG ACTACGAGGTCTACGACTGGAAGAAGCTCGACGCCAAGAGCGAGGAGACC AAGAAGCTGGTCACCCAGTACTTCTCCTGGTCCGGCACCGACAAGGACGG TCGCAAGTTCAACCAGGGCAAGATCTTCAAGTAATCATCTCTGCCTAGCC CAGCTCCGCTCAAAGCAGCAGCCGCCCTCATTTAGACCAACAACAACAAC AGCAGCAGTAACAATAAAGTTGAGATTTAAAATGCAGGAAGAGCACAATG CCCATTTCTTAAGTTCCAACTGATAAGTACACTAAAGATATCCAATATCT GTCGTGCTGCCTCCCACGTTTGGCGGAATCGTGTGTCTCGCCTCCTGCAT TTTGTACTGGAGAATTTGTTTGTAACCGCCTAAGCATAACACAGCATGAT ATTGTCAACGGAACAGCCGCCTGCAGTCAGAAAATATTTATAAAAAATAA AAGGTTTTCTATTAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ef1gamma-RA | 1823 | Ef1gamma-RA | 105..1818 | 3..1715 | 8515 | 99.8 | Plus |
Ef1gamma-RB | 1776 | Ef1gamma-RB | 116..1771 | 61..1715 | 8225 | 99.8 | Plus |
Ef1gamma.d | 1689 | Ef1gamma.d | 30..1684 | 62..1715 | 8220 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25043400..25044867 | 249..1715 | 7140 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 25043189..25043340 | 101..252 | 760 | 100 | Plus |
chr3R | 27901430 | chr3R | 25042970..25043067 | 3..100 | 490 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29220641..29222108 | 249..1715 | 7275 | 99.9 | Plus |
3R | 32079331 | 3R | 29220430..29220581 | 101..252 | 760 | 100 | Plus |
3R | 32079331 | 3R | 29220211..29220308 | 3..100 | 490 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 28961472..28962939 | 249..1715 | 7285 | 99.8 | Plus |
3R | 31820162 | 3R | 28961261..28961412 | 101..252 | 760 | 100 | Plus |
3R | 31820162 | 3R | 28961042..28961139 | 3..100 | 490 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2426 | 1414..1467 | 132 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6861 | 1401..1466 | 129 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6751 | 1428..1467 | 128 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6772 | 1380..1467 | 125 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6810 | 1414..1463 | 120 | 73.1 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3312 | 1401..1468 | 119 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6793 | 1436..1467 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2366 | 1412..1467 | 114 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2836 | 1401..1463 | 113 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5648..5675 | 1437..1464 | 113 | 89.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25042968..25043067 | 1..100 | 99 | -> | Plus |
chr3R | 25043189..25043338 | 101..250 | 100 | -> | Plus |
chr3R | 25043402..25044827 | 251..1675 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1296 | 89..1384 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RC | 1..1296 | 89..1384 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1296 | 89..1384 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1296 | 89..1384 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RB | 1..1296 | 89..1384 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1716 | 2..1716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1716 | 2..1716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1661 | 56..1716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1716 | 2..1716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ef1gamma-RA | 1..1661 | 56..1716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29220643..29222108 | 251..1716 | 99 | Plus | |
3R | 29220209..29220308 | 1..100 | 99 | -> | Plus |
3R | 29220430..29220579 | 101..250 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29220643..29222108 | 251..1716 | 99 | Plus | |
3R | 29220209..29220308 | 1..100 | 99 | -> | Plus |
3R | 29220430..29220579 | 101..250 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29220643..29222108 | 251..1716 | 99 | Plus | |
3R | 29220209..29220308 | 1..100 | 99 | -> | Plus |
3R | 29220430..29220579 | 101..250 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25045931..25046030 | 1..100 | 99 | -> | Plus |
arm_3R | 25046152..25046301 | 101..250 | 100 | -> | Plus |
arm_3R | 25046365..25047830 | 251..1716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 28961474..28962939 | 251..1716 | 99 | Plus | |
3R | 28961040..28961139 | 1..100 | 99 | -> | Plus |
3R | 28961261..28961410 | 101..250 | 100 | -> | Plus |
Translation from 0 to 1383
> RE32823.hyp CAPRFFAEFATISYLILYLQADDLNGESTMVKGTLYTYPENFRAYKALIA AQYSGAQVKVADNFKFGETNKSAEFLKKFPGGKVPAFETAEGQYLSESNA IAYLLANEQLRGGKCPFVQAQVQQWISFADNEIVPASCAWVFPLLGILPQ QKNSTAKQEAEAVLQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYV LEPSVRSAFGNVNRWFVTILNQKQVQAVVKDYKLCEKALVFDPKKYAEFQ AKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAEPAEELDAADEALAAEPK SKDPFDALPKGTFNFDDFKRVYSNEDEAKSIPYFFDKFDAENYSIWFGEY KYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWV WRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQYFSWSGTDKDG RKFNQGKIFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ef1gamma-PC | 431 | CG11901-PC | 1..431 | 30..460 | 2255 | 100 | Plus |
Ef1gamma-PA | 431 | CG11901-PA | 1..431 | 30..460 | 2255 | 100 | Plus |
Ef1gamma-PB | 431 | CG11901-PB | 1..431 | 30..460 | 2255 | 100 | Plus |
Translation from 88 to 1383
> RE32823.pep MVKGTLYTYPENFRAYKALIAAQYSGAQVKVADNFKFGETNKSAEFLKKF PGGKVPAFETAEGQYLSESNAIAYLLANEQLRGGKCPFVQAQVQQWISFA DNEIVPASCAWVFPLLGILPQQKNSTAKQEAEAVLQQLNQKLQDATFLAG ERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQKQVQAVV KDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPK KAAEPAEELDAADEALAAEPKSKDPFDALPKGTFNFDDFKRVYSNEDEAK SIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKA AFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAK SEETKKLVTQYFSWSGTDKDGRKFNQGKIFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18406-PA | 432 | GF18406-PA | 1..432 | 1..431 | 1977 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11656-PA | 430 | GG11656-PA | 1..430 | 1..431 | 2220 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14004-PA | 429 | GH14004-PA | 1..429 | 1..431 | 1834 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eEF1gamma-PC | 431 | CG11901-PC | 1..431 | 1..431 | 2255 | 100 | Plus |
eEF1gamma-PA | 431 | CG11901-PA | 1..431 | 1..431 | 2255 | 100 | Plus |
eEF1gamma-PB | 431 | CG11901-PB | 1..431 | 1..431 | 2255 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22348-PA | 426 | GI22348-PA | 1..426 | 1..431 | 1808 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13604-PA | 380 | GL13604-PA | 5..380 | 55..431 | 1622 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11269-PA | 430 | GA11269-PA | 1..430 | 1..431 | 1883 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12777-PA | 454 | GM12777-PA | 31..454 | 5..431 | 2197 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21427-PA | 457 | GD21427-PA | 31..457 | 5..431 | 2232 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14227-PA | 422 | GJ14227-PA | 1..422 | 1..431 | 1798 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12377-PA | 333 | GK12377-PA | 10..333 | 84..431 | 1310 | 76.3 | Plus |
Dwil\GK22492-PA | 264 | GK22492-PA | 1..210 | 1..210 | 956 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Ef1gamma-PA | 431 | GE23845-PA | 1..431 | 1..431 | 2246 | 98.8 | Plus |