BDGP Sequence Production Resources |
Search the DGRC for RE32936
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 329 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Smyd4-RA |
Protein status: | RE32936.pep: gold |
Preliminary Size: | 1992 |
Sequenced Size: | 2068 |
Gene | Date | Evidence |
---|---|---|
CG14122 | 2001-12-14 | Blastp of sequenced clone |
CG14122 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14122 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14122 | 2008-04-29 | Release 5.5 accounting |
CG14122 | 2008-08-15 | Release 5.9 accounting |
CG14122 | 2008-12-18 | 5.12 accounting |
2068 bp (2068 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071300
> RE32936.complete AAATGGAGTTCGACGCCACGTACCACGAGATCTGCTCCGCGCAGACGGTT CAGTCGGAGAGGAGGGGATTCTTCAACGAATTTTGCGTGGACGTGCGTGA TGCATGTGGCGACAAGTGGCTGCGCAACTACTTTGGCAAACTGAAGTCCA ATGCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCGAGGTGTGCGATCCT GTGCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTCAAGCAGAAGGATGC CCTCTTCTCGGCCCAGCGACGTGCACAGGCGGATAAGCTCTACCTGATGA GCGGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGCTGCAGCAGGCTCTA ATGGCCGCCAATCTGGCCGTGATGCGGGCTCCCGACCGCAATGCAGATCC TGTCCTCGATGAGGGCCTCACCTTGGCATTGGCCTACAGATCGAGGGCTT CCATATTGATCCGCTTGGGCGAGGGGGAGGCAGCATTGAATGACCTCAAG CTGGCCATCAACTTTGGACTGGAGCTCAAGTCCAGTGTGGATTACTACTT AAAGATGGCCAAAGCCTATGCAGTCATGGGAGAACCTGCCCGCGCTGAGA TCTCATTGAAGATAGCCGAGAAAATGCCTGGCTGTGATGCCACCCACATC GCACTGTGCCGCAAGGAACTATCATCAGTAAAGCCGAAACCCAAGGAAGC CACCTCGGAACAGGTGCCACAACTGGCACATGGCGAGAGTGCCGAACTAG TTGGTGCGTCCAAGGTGGTGAGGCTGGTGGAGACCAAGGACAAGGGTCGT TTTGTGGTGGCCAACGAGGGTCTGAGAACCGGCGACGTTCTGCTCTTCGA GGAGCCAGTGGCCGCCTGTTTGGAGCCCAGTTACTTTGGCACTCATTGTC ATCATTGCTTCAAGAGGCTGCACACTCCCGTTTCCTGTCTCCACTGCTCG GGAATCGCCTTCTGCTCCGCCCAGTGCATGGGCGAGGCCTGCTCCAGTTA CCATCGCTTCGAGTGCGAGTATATGGACTTGATGATCGGTTCTGGCATGT CCATCCTGTGCTTCATCGCGCTGCGCATCTTCACACAGGCGCCCAGCTTG GAGCAGGGCTTGGCCACCGCCAATCTGCTCTTCGAGCACTTGTGCTCCCA CGAGGAGGACCGCCAGCCGGACGACTACTTGCGGCGAGCTCTGATGTCTG GCTTCCTGTTGCGCATTCTACAGAAGTCGCTGTACTTCGGACGTCGCAAA ACTGAGGGAGTGAATCCAACTGCGGTGGAGCTGCAGGTGGCCACCGCTTT GCTGGGCCTGCTGCAGGTGCTCCAGTACAATGCCCACCAGATCTATCAAA CCCAAGTGACCGAGGAGCATCGCTTCGACGGCAGTAAGACGGTGTATCTG GCCGCAGGACTTTATGGTACTGGTTCCTACTTCAATCACGAGTGCTGGCC CAGCACCGCTTGTCATTTTGTTGGCAAGAAGCTGGTCCTCACAGCCACCA GGCCGCATCGTGCCAATGAATTGGTGGCCGTGAACTACGGACCCATTTTC ATCAAAAACAACTTGAAGGAGAGACAGCGATCTCTGCGAGGACGCTACTC CTTCAGCTGCAGCTGCATGGCCTGCCAGGAGAACTGGCCACTGCTCCAGA AACTGGACAAGCAAGTGCGATTCTGGTGCACCTCAGCCAACTGCTCTAAT TTGCTCAAGTTCCCCAAGGATTTGGCAAAGGATGTGCGTTGTCCTCGCTG CCGCAAGAACATCTCACTCAAGGAGAGCGTAGCCAAGATGATCAAGATCG AGGAGCTGTATCGAGAGGCTGCGCGAGCCATGGAGGCCCAGAAAACCGTG GAGGCCATAGAACTTTTCAAGGAGTCGCTCGATATGTTCTTCCAAGTGGC TGCACTGCCTCACAAGGACACCATAGTGGCGCAGCAGTCGCTGCATAAGT GTTTGTCCGATACGGGAACCACATTTAAAAAGGAAGGGAAATGAACGAAA AACTAGTTAATGGCGTGTGCACTTGTATTATTAAATCGTTTTTTTCTACT TGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Smyd4-RA | 2303 | Smyd4-RA | 175..2228 | 1..2054 | 10270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12391832..12392404 | 573..1 | 2835 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 12390834..12391372 | 1453..915 | 2695 | 100 | Minus |
chr3L | 24539361 | chr3L | 12390121..12390498 | 2052..1675 | 1800 | 98.4 | Minus |
chr3L | 24539361 | chr3L | 12391430..12391776 | 917..571 | 1735 | 100 | Minus |
chr3L | 24539361 | chr3L | 12390550..12390776 | 1678..1452 | 1135 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12401250..12401822 | 573..1 | 2865 | 100 | Minus |
3L | 28110227 | 3L | 12400252..12400790 | 1453..915 | 2695 | 100 | Minus |
3L | 28110227 | 3L | 12399537..12399916 | 2054..1675 | 1900 | 100 | Minus |
3L | 28110227 | 3L | 12400848..12401194 | 917..571 | 1735 | 100 | Minus |
3L | 28110227 | 3L | 12399968..12400194 | 1678..1452 | 1135 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12394350..12394922 | 573..1 | 2865 | 100 | Minus |
3L | 28103327 | 3L | 12393352..12393890 | 1453..915 | 2695 | 100 | Minus |
3L | 28103327 | 3L | 12392637..12393016 | 2054..1675 | 1900 | 100 | Minus |
3L | 28103327 | 3L | 12393948..12394294 | 917..571 | 1735 | 100 | Minus |
3L | 28103327 | 3L | 12393068..12393294 | 1678..1452 | 1135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12390553..12390774 | 1454..1675 | 100 | <- | Minus |
chr3L | 12390121..12390497 | 1676..2052 | 98 | <- | Minus |
chr3L | 12390834..12391370 | 917..1453 | 100 | <- | Minus |
chr3L | 12391431..12391773 | 574..916 | 100 | <- | Minus |
chr3L | 12391832..12392404 | 1..573 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14122-RA | 1..1992 | 3..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smyd4-RA | 1..1992 | 3..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smyd4-RA | 1..1992 | 3..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14122-RA | 1..1992 | 3..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smyd4-RA | 1..1992 | 3..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14122-RA | 95..2146 | 1..2052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smyd4-RA | 95..2146 | 1..2052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smyd4-RA | 114..2165 | 1..2052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14122-RA | 95..2146 | 1..2052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Smyd4-RA | 114..2165 | 1..2052 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12399539..12399915 | 1676..2052 | 100 | <- | Minus |
3L | 12399971..12400192 | 1454..1675 | 100 | <- | Minus |
3L | 12400252..12400788 | 917..1453 | 100 | <- | Minus |
3L | 12400849..12401191 | 574..916 | 100 | <- | Minus |
3L | 12401250..12401822 | 1..573 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12399539..12399915 | 1676..2052 | 100 | <- | Minus |
3L | 12399971..12400192 | 1454..1675 | 100 | <- | Minus |
3L | 12400252..12400788 | 917..1453 | 100 | <- | Minus |
3L | 12400849..12401191 | 574..916 | 100 | <- | Minus |
3L | 12401250..12401822 | 1..573 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12399539..12399915 | 1676..2052 | 100 | <- | Minus |
3L | 12399971..12400192 | 1454..1675 | 100 | <- | Minus |
3L | 12400252..12400788 | 917..1453 | 100 | <- | Minus |
3L | 12400849..12401191 | 574..916 | 100 | <- | Minus |
3L | 12401250..12401822 | 1..573 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12393071..12393292 | 1454..1675 | 100 | <- | Minus |
arm_3L | 12392639..12393015 | 1676..2052 | 100 | <- | Minus |
arm_3L | 12393352..12393888 | 917..1453 | 100 | <- | Minus |
arm_3L | 12393949..12394291 | 574..916 | 100 | <- | Minus |
arm_3L | 12394350..12394922 | 1..573 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12392639..12393015 | 1676..2052 | 100 | <- | Minus |
3L | 12393071..12393292 | 1454..1675 | 100 | <- | Minus |
3L | 12393352..12393888 | 917..1453 | 100 | <- | Minus |
3L | 12393949..12394291 | 574..916 | 100 | <- | Minus |
3L | 12394350..12394922 | 1..573 | 100 | Minus |
Translation from 2 to 1993
> RE32936.pep MEFDATYHEICSAQTVQSERRGFFNEFCVDVRDACGDKWLRNYFGKLKSN AARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS GSGDGEESRELLQQALMAANLAVMRAPDRNADPVLDEGLTLALAYRSRAS ILIRLGEGEAALNDLKLAINFGLELKSSVDYYLKMAKAYAVMGEPARAEI SLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELV GASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCH HCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYMDLMIGSGMS ILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRALMSG FLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATR PHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQK LDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIE ELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKC LSDTGTTFKKEGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24983-PA | 663 | GF24983-PA | 1..663 | 1..660 | 3106 | 86.4 | Plus |
Dana\GF12554-PA | 660 | GF12554-PA | 118..657 | 147..658 | 573 | 28.1 | Plus |
Dana\GF12292-PA | 574 | GF12292-PA | 176..501 | 234..551 | 243 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13835-PA | 665 | GG13835-PA | 1..665 | 1..663 | 3360 | 94.6 | Plus |
Dere\GG20202-PA | 660 | GG20202-PA | 237..657 | 252..658 | 563 | 30.8 | Plus |
Dere\GG20247-PA | 573 | GG20247-PA | 171..501 | 240..551 | 260 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16068-PA | 662 | GH16068-PA | 1..662 | 1..660 | 2779 | 76.3 | Plus |
Dgri\GH21386-PA | 664 | GH21386-PA | 241..662 | 252..659 | 562 | 30.6 | Plus |
Dgri\GH20862-PA | 574 | GH20862-PA | 171..495 | 240..545 | 238 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Smyd4-2-PA | 663 | CG14122-PA | 1..663 | 1..663 | 3455 | 100 | Plus |
Smyd4-3-PA | 660 | CG7759-PA | 2..657 | 14..658 | 557 | 25.7 | Plus |
Smyd4-4-PA | 573 | CG8378-PA | 171..497 | 240..547 | 258 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12333-PA | 661 | GI12333-PA | 1..661 | 1..660 | 2741 | 76.1 | Plus |
Dmoj\GI18563-PA | 666 | GI18563-PA | 6..663 | 18..658 | 565 | 26.9 | Plus |
Dmoj\GI20970-PA | 574 | GI20970-PA | 187..501 | 256..551 | 258 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24960-PA | 661 | GL24960-PA | 1..661 | 1..660 | 2954 | 81.4 | Plus |
Dper\GL11690-PA | 660 | GL11690-PA | 2..657 | 14..658 | 564 | 26.7 | Plus |
Dper\GL16991-PA | 574 | GL16991-PA | 171..501 | 240..551 | 256 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12774-PA | 661 | GA12774-PA | 1..661 | 1..660 | 2945 | 81.1 | Plus |
Dpse\GA20567-PA | 660 | GA20567-PA | 2..657 | 14..658 | 559 | 26.7 | Plus |
Dpse\GA20567-PB | 567 | GA20567-PB | 139..564 | 247..658 | 553 | 30.4 | Plus |
Dpse\GA21031-PA | 574 | GA21031-PA | 171..501 | 240..551 | 256 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24661-PA | 660 | GM24661-PA | 1..660 | 1..660 | 3477 | 97.9 | Plus |
Dsec\GM21288-PA | 660 | GM21288-PA | 237..657 | 252..658 | 553 | 30.4 | Plus |
Dsec\GM21333-PA | 573 | GM21333-PA | 171..498 | 240..548 | 286 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12724-PA | 663 | GD12724-PA | 1..663 | 1..663 | 3494 | 97.7 | Plus |
Dsim\GD10796-PA | 646 | GD10796-PA | 237..643 | 252..658 | 535 | 30 | Plus |
Dsim\GD10841-PA | 694 | GD10841-PA | 171..477 | 240..530 | 229 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12224-PA | 661 | GJ12224-PA | 1..661 | 1..660 | 2756 | 76.7 | Plus |
Dvir\GJ20356-PA | 662 | GJ20356-PA | 234..659 | 245..658 | 542 | 30.8 | Plus |
Dvir\GJ20689-PA | 574 | GJ20689-PA | 187..501 | 256..551 | 255 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20590-PA | 661 | GK20590-PA | 1..661 | 1..660 | 2837 | 78.5 | Plus |
Dwil\GK21416-PA | 661 | GK21416-PA | 238..658 | 253..658 | 549 | 31.4 | Plus |
Dwil\GK19653-PA | 574 | GK19653-PA | 164..504 | 225..554 | 260 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20125-PA | 667 | GE20125-PA | 1..667 | 1..663 | 3403 | 94.5 | Plus |
Dyak\GE12361-PA | 660 | GE12361-PA | 237..657 | 252..658 | 554 | 30.4 | Plus |
Dyak\GE12406-PA | 573 | GE12406-PA | 171..501 | 240..551 | 272 | 26.3 | Plus |
Translation from 2 to 1993
> RE32936.hyp MEFDATYHEICSAQTVQSERRGFFNEFCVDVRDACGDKWLRNYFGKLKSN AARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS GSGDGEESRELLQQALMAANLAVMRAPDRNADPVLDEGLTLALAYRSRAS ILIRLGEGEAALNDLKLAINFGLELKSSVDYYLKMAKAYAVMGEPARAEI SLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELV GASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCH HCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYMDLMIGSGMS ILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRALMSG FLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATR PHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQK LDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIE ELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKC LSDTGTTFKKEGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Smyd4-PA | 663 | CG14122-PA | 1..663 | 1..663 | 3455 | 100 | Plus |
CG7759-PA | 660 | CG7759-PA | 2..657 | 14..658 | 557 | 25.7 | Plus |
CG8378-PA | 573 | CG8378-PA | 171..497 | 240..547 | 258 | 26.8 | Plus |