Clone RE32936 Report

Search the DGRC for RE32936

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:329
Well:36
Vector:pFlc-1
Associated Gene/TranscriptSmyd4-RA
Protein status:RE32936.pep: gold
Preliminary Size:1992
Sequenced Size:2068

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14122 2001-12-14 Blastp of sequenced clone
CG14122 2002-01-01 Sim4 clustering to Release 2
CG14122 2003-01-01 Sim4 clustering to Release 3
CG14122 2008-04-29 Release 5.5 accounting
CG14122 2008-08-15 Release 5.9 accounting
CG14122 2008-12-18 5.12 accounting

Clone Sequence Records

RE32936.complete Sequence

2068 bp (2068 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071300

> RE32936.complete
AAATGGAGTTCGACGCCACGTACCACGAGATCTGCTCCGCGCAGACGGTT
CAGTCGGAGAGGAGGGGATTCTTCAACGAATTTTGCGTGGACGTGCGTGA
TGCATGTGGCGACAAGTGGCTGCGCAACTACTTTGGCAAACTGAAGTCCA
ATGCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCGAGGTGTGCGATCCT
GTGCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTCAAGCAGAAGGATGC
CCTCTTCTCGGCCCAGCGACGTGCACAGGCGGATAAGCTCTACCTGATGA
GCGGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGCTGCAGCAGGCTCTA
ATGGCCGCCAATCTGGCCGTGATGCGGGCTCCCGACCGCAATGCAGATCC
TGTCCTCGATGAGGGCCTCACCTTGGCATTGGCCTACAGATCGAGGGCTT
CCATATTGATCCGCTTGGGCGAGGGGGAGGCAGCATTGAATGACCTCAAG
CTGGCCATCAACTTTGGACTGGAGCTCAAGTCCAGTGTGGATTACTACTT
AAAGATGGCCAAAGCCTATGCAGTCATGGGAGAACCTGCCCGCGCTGAGA
TCTCATTGAAGATAGCCGAGAAAATGCCTGGCTGTGATGCCACCCACATC
GCACTGTGCCGCAAGGAACTATCATCAGTAAAGCCGAAACCCAAGGAAGC
CACCTCGGAACAGGTGCCACAACTGGCACATGGCGAGAGTGCCGAACTAG
TTGGTGCGTCCAAGGTGGTGAGGCTGGTGGAGACCAAGGACAAGGGTCGT
TTTGTGGTGGCCAACGAGGGTCTGAGAACCGGCGACGTTCTGCTCTTCGA
GGAGCCAGTGGCCGCCTGTTTGGAGCCCAGTTACTTTGGCACTCATTGTC
ATCATTGCTTCAAGAGGCTGCACACTCCCGTTTCCTGTCTCCACTGCTCG
GGAATCGCCTTCTGCTCCGCCCAGTGCATGGGCGAGGCCTGCTCCAGTTA
CCATCGCTTCGAGTGCGAGTATATGGACTTGATGATCGGTTCTGGCATGT
CCATCCTGTGCTTCATCGCGCTGCGCATCTTCACACAGGCGCCCAGCTTG
GAGCAGGGCTTGGCCACCGCCAATCTGCTCTTCGAGCACTTGTGCTCCCA
CGAGGAGGACCGCCAGCCGGACGACTACTTGCGGCGAGCTCTGATGTCTG
GCTTCCTGTTGCGCATTCTACAGAAGTCGCTGTACTTCGGACGTCGCAAA
ACTGAGGGAGTGAATCCAACTGCGGTGGAGCTGCAGGTGGCCACCGCTTT
GCTGGGCCTGCTGCAGGTGCTCCAGTACAATGCCCACCAGATCTATCAAA
CCCAAGTGACCGAGGAGCATCGCTTCGACGGCAGTAAGACGGTGTATCTG
GCCGCAGGACTTTATGGTACTGGTTCCTACTTCAATCACGAGTGCTGGCC
CAGCACCGCTTGTCATTTTGTTGGCAAGAAGCTGGTCCTCACAGCCACCA
GGCCGCATCGTGCCAATGAATTGGTGGCCGTGAACTACGGACCCATTTTC
ATCAAAAACAACTTGAAGGAGAGACAGCGATCTCTGCGAGGACGCTACTC
CTTCAGCTGCAGCTGCATGGCCTGCCAGGAGAACTGGCCACTGCTCCAGA
AACTGGACAAGCAAGTGCGATTCTGGTGCACCTCAGCCAACTGCTCTAAT
TTGCTCAAGTTCCCCAAGGATTTGGCAAAGGATGTGCGTTGTCCTCGCTG
CCGCAAGAACATCTCACTCAAGGAGAGCGTAGCCAAGATGATCAAGATCG
AGGAGCTGTATCGAGAGGCTGCGCGAGCCATGGAGGCCCAGAAAACCGTG
GAGGCCATAGAACTTTTCAAGGAGTCGCTCGATATGTTCTTCCAAGTGGC
TGCACTGCCTCACAAGGACACCATAGTGGCGCAGCAGTCGCTGCATAAGT
GTTTGTCCGATACGGGAACCACATTTAAAAAGGAAGGGAAATGAACGAAA
AACTAGTTAATGGCGTGTGCACTTGTATTATTAAATCGTTTTTTTCTACT
TGAAAAAAAAAAAAAAAA

RE32936.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd4-RA 2303 Smyd4-RA 175..2228 1..2054 10270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12391832..12392404 573..1 2835 99.7 Minus
chr3L 24539361 chr3L 12390834..12391372 1453..915 2695 100 Minus
chr3L 24539361 chr3L 12390121..12390498 2052..1675 1800 98.4 Minus
chr3L 24539361 chr3L 12391430..12391776 917..571 1735 100 Minus
chr3L 24539361 chr3L 12390550..12390776 1678..1452 1135 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:49:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12401250..12401822 573..1 2865 100 Minus
3L 28110227 3L 12400252..12400790 1453..915 2695 100 Minus
3L 28110227 3L 12399537..12399916 2054..1675 1900 100 Minus
3L 28110227 3L 12400848..12401194 917..571 1735 100 Minus
3L 28110227 3L 12399968..12400194 1678..1452 1135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12394350..12394922 573..1 2865 100 Minus
3L 28103327 3L 12393352..12393890 1453..915 2695 100 Minus
3L 28103327 3L 12392637..12393016 2054..1675 1900 100 Minus
3L 28103327 3L 12393948..12394294 917..571 1735 100 Minus
3L 28103327 3L 12393068..12393294 1678..1452 1135 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:15:02 has no hits.

RE32936.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:13 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12390553..12390774 1454..1675 100 <- Minus
chr3L 12390121..12390497 1676..2052 98 <- Minus
chr3L 12390834..12391370 917..1453 100 <- Minus
chr3L 12391431..12391773 574..916 100 <- Minus
chr3L 12391832..12392404 1..573 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:01 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
CG14122-RA 1..1992 3..1994 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:45 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
Smyd4-RA 1..1992 3..1994 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:09:35 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
Smyd4-RA 1..1992 3..1994 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:38:29 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
CG14122-RA 1..1992 3..1994 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:39 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
Smyd4-RA 1..1992 3..1994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:45:06 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
CG14122-RA 95..2146 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:45 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
Smyd4-RA 95..2146 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:35 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
Smyd4-RA 114..2165 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:38:29 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
CG14122-RA 95..2146 1..2052 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:39 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
Smyd4-RA 114..2165 1..2052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:13 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12399539..12399915 1676..2052 100 <- Minus
3L 12399971..12400192 1454..1675 100 <- Minus
3L 12400252..12400788 917..1453 100 <- Minus
3L 12400849..12401191 574..916 100 <- Minus
3L 12401250..12401822 1..573 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:13 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12399539..12399915 1676..2052 100 <- Minus
3L 12399971..12400192 1454..1675 100 <- Minus
3L 12400252..12400788 917..1453 100 <- Minus
3L 12400849..12401191 574..916 100 <- Minus
3L 12401250..12401822 1..573 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:13 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12399539..12399915 1676..2052 100 <- Minus
3L 12399971..12400192 1454..1675 100 <- Minus
3L 12400252..12400788 917..1453 100 <- Minus
3L 12400849..12401191 574..916 100 <- Minus
3L 12401250..12401822 1..573 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:35 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12393071..12393292 1454..1675 100 <- Minus
arm_3L 12392639..12393015 1676..2052 100 <- Minus
arm_3L 12393352..12393888 917..1453 100 <- Minus
arm_3L 12393949..12394291 574..916 100 <- Minus
arm_3L 12394350..12394922 1..573 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:36 Download gff for RE32936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12392639..12393015 1676..2052 100 <- Minus
3L 12393071..12393292 1454..1675 100 <- Minus
3L 12393352..12393888 917..1453 100 <- Minus
3L 12393949..12394291 574..916 100 <- Minus
3L 12394350..12394922 1..573 100   Minus

RE32936.pep Sequence

Translation from 2 to 1993

> RE32936.pep
MEFDATYHEICSAQTVQSERRGFFNEFCVDVRDACGDKWLRNYFGKLKSN
AARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS
GSGDGEESRELLQQALMAANLAVMRAPDRNADPVLDEGLTLALAYRSRAS
ILIRLGEGEAALNDLKLAINFGLELKSSVDYYLKMAKAYAVMGEPARAEI
SLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELV
GASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCH
HCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYMDLMIGSGMS
ILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRALMSG
FLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT
QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATR
PHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQK
LDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIE
ELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKC
LSDTGTTFKKEGK*

RE32936.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24983-PA 663 GF24983-PA 1..663 1..660 3106 86.4 Plus
Dana\GF12554-PA 660 GF12554-PA 118..657 147..658 573 28.1 Plus
Dana\GF12292-PA 574 GF12292-PA 176..501 234..551 243 25.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13835-PA 665 GG13835-PA 1..665 1..663 3360 94.6 Plus
Dere\GG20202-PA 660 GG20202-PA 237..657 252..658 563 30.8 Plus
Dere\GG20247-PA 573 GG20247-PA 171..501 240..551 260 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16068-PA 662 GH16068-PA 1..662 1..660 2779 76.3 Plus
Dgri\GH21386-PA 664 GH21386-PA 241..662 252..659 562 30.6 Plus
Dgri\GH20862-PA 574 GH20862-PA 171..495 240..545 238 26.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd4-2-PA 663 CG14122-PA 1..663 1..663 3455 100 Plus
Smyd4-3-PA 660 CG7759-PA 2..657 14..658 557 25.7 Plus
Smyd4-4-PA 573 CG8378-PA 171..497 240..547 258 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12333-PA 661 GI12333-PA 1..661 1..660 2741 76.1 Plus
Dmoj\GI18563-PA 666 GI18563-PA 6..663 18..658 565 26.9 Plus
Dmoj\GI20970-PA 574 GI20970-PA 187..501 256..551 258 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24960-PA 661 GL24960-PA 1..661 1..660 2954 81.4 Plus
Dper\GL11690-PA 660 GL11690-PA 2..657 14..658 564 26.7 Plus
Dper\GL16991-PA 574 GL16991-PA 171..501 240..551 256 26.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12774-PA 661 GA12774-PA 1..661 1..660 2945 81.1 Plus
Dpse\GA20567-PA 660 GA20567-PA 2..657 14..658 559 26.7 Plus
Dpse\GA20567-PB 567 GA20567-PB 139..564 247..658 553 30.4 Plus
Dpse\GA21031-PA 574 GA21031-PA 171..501 240..551 256 26.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24661-PA 660 GM24661-PA 1..660 1..660 3477 97.9 Plus
Dsec\GM21288-PA 660 GM21288-PA 237..657 252..658 553 30.4 Plus
Dsec\GM21333-PA 573 GM21333-PA 171..498 240..548 286 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12724-PA 663 GD12724-PA 1..663 1..663 3494 97.7 Plus
Dsim\GD10796-PA 646 GD10796-PA 237..643 252..658 535 30 Plus
Dsim\GD10841-PA 694 GD10841-PA 171..477 240..530 229 27.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12224-PA 661 GJ12224-PA 1..661 1..660 2756 76.7 Plus
Dvir\GJ20356-PA 662 GJ20356-PA 234..659 245..658 542 30.8 Plus
Dvir\GJ20689-PA 574 GJ20689-PA 187..501 256..551 255 28.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20590-PA 661 GK20590-PA 1..661 1..660 2837 78.5 Plus
Dwil\GK21416-PA 661 GK21416-PA 238..658 253..658 549 31.4 Plus
Dwil\GK19653-PA 574 GK19653-PA 164..504 225..554 260 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20125-PA 667 GE20125-PA 1..667 1..663 3403 94.5 Plus
Dyak\GE12361-PA 660 GE12361-PA 237..657 252..658 554 30.4 Plus
Dyak\GE12406-PA 573 GE12406-PA 171..501 240..551 272 26.3 Plus

RE32936.hyp Sequence

Translation from 2 to 1993

> RE32936.hyp
MEFDATYHEICSAQTVQSERRGFFNEFCVDVRDACGDKWLRNYFGKLKSN
AARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS
GSGDGEESRELLQQALMAANLAVMRAPDRNADPVLDEGLTLALAYRSRAS
ILIRLGEGEAALNDLKLAINFGLELKSSVDYYLKMAKAYAVMGEPARAEI
SLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELV
GASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCH
HCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYMDLMIGSGMS
ILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRALMSG
FLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT
QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATR
PHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQK
LDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIE
ELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKC
LSDTGTTFKKEGK*

RE32936.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd4-PA 663 CG14122-PA 1..663 1..663 3455 100 Plus
CG7759-PA 660 CG7759-PA 2..657 14..658 557 25.7 Plus
CG8378-PA 573 CG8378-PA 171..497 240..547 258 26.8 Plus