Clone RE32990 Report

Search the DGRC for RE32990

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:329
Well:90
Vector:pFlc-1
Associated Gene/TranscriptRbf2-RA
Protein status:RE32990.pep: gold
Preliminary Size:2448
Sequenced Size:2713

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5083 2001-12-14 Blastp of sequenced clone
CG5083 2002-01-01 Sim4 clustering to Release 2
CG5083 2003-01-01 Sim4 clustering to Release 3
Rbf2 2008-04-29 Release 5.5 accounting
Rbf2 2008-08-15 Release 5.9 accounting
Rbf2 2008-12-18 5.12 accounting

Clone Sequence Records

RE32990.complete Sequence

2713 bp (2713 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071301

> RE32990.complete
GATAACAATGGCGGTGAGGCAGGCAGCAATCGAAATCATTCGCGCCTTTC
TGAAATTTGCATTTTGTACAGTCTAAACGGGGATTCGCGTAAACTACGCA
GAAATATAAACAAACAAAAACTAGTAGACTATAGAATATAAACAGTTTCC
TACCAATGGAGACTTGTGAAGTGGAGGGAGAGGCGGAGACGCTGGTGAGA
CGCTTCTCCGTCAGCTGCGAGCAATTGGAGCTGGAAGCGAGAATTCAGCA
AAGCGCTCTGTCCACCTACCATCGCTTGGATGCGGTCAACGGGCTGTCCA
CCAGCGAGGCAGATGCCCAGGAGTGGCTGTGTTGCGCCGTCTACAGCGAA
CTGCAGCGCTCGAAGATGCGCGATATTAGGGAGTCCATCAACGAGGCAAA
CGATTCGGTGGCCAAGAACTGCTGCTGGAACGTGTCACTAACCCGTCTGC
TGCGCAGCTTTAAGATGAACGTGTCCCAGTTTCTACGCCGCATGGAGCAC
TGGAATTGGCTGACCCAAAACGAGAACACTTTCCAGCTGGAGGTTGAGGA
ACTGCGTTGTCGACTTGGTATTACTTCGACGCTGCTGCGGCATTATAAGC
ACATCTTTCGGAGCCTGTTCGTTCACCCCGGCAAGGGTGCGGACCCGGGT
GCCGCGAATCACTACCAAGCGCTGTATGAGTTCGGTTGGTTGCTCTTCCT
GGTCATTCGCAACGAGTTACCCGGTTTTGCGATTACAAACCTGATCAACG
GCTGTCAGGTGCTCGTTTGCACAATGGATCTCCTTTTCGTGAACGCCTTA
GAGGTGCCCCGATCCGTAGTTATCCGCCGGGAGTTCTCTGGAGTGCCCAA
GAATTGGGACACCGAAGACTTCAATCCTATTTTGCTAAATAAATATAGCG
TGCTAGAAGCACTGGGAGAACTGATTCCCGAGCTACCAGCGAAGGGAGTG
GTGCAAATGAAGAACGCCTTTTTCCACAAAGCCTTAATAATGCTCTATAT
GGACCATAGTCTAGTTGGAGACGACACCCATATGCGGGAGATCATTAAGG
AGGGTATGCTAGATATCAATCTGGAAAACTTAAATCGCAAATACACCAAT
CAAGTAGCCGACATTAGTGAGATGGACGAGCGTGTGCTGCTCAGCGTCCA
GGGGGCGATAGAGACCAAAGGGGACTCTCCTAAAAGCCCACAGCTCGCCT
TCCAAACAAGCTCGTCACCTTCGCATAGGAAGCTGTCCACCCATGATCTA
CCAGCAAGTCTTCCCCTAAGCATTATAAAAGCATTCCCCAAGAAGGAAGA
CGCAGATAAAATTGTAAATTATTTAGATCAAACTCTGGAAGAAATGAATC
GGACCTTTACCATGGCCGTGAAAGATTTTTTGGATGCTGAGTTGTCTGGA
AAACGATTCCGCCAGGCCAGAGGCCTTTACTACAAATATTTGCAGAAAAT
TTTGGGACCGGAGCTGGTTCAAAAACCACAGCTGAAGATTGGTCAGTTAA
TGAAGCAGCGCAAGCTTACCGCCGCCCTGTTAGCTTGCTGCCTGGAACTG
GCACTTCACGTCCACCACAAACTAGTGGAAGGCCTAAGGTTTCCCTTTGT
CCTGCACTGCTTTTCACTGGACGCCTACGACTTTCAAAAGATTCTAGAGT
TGGTGGTGCGCTACGATCATGGTTTTCTGGGCAGAGAGCTGATCAAGCAC
CTGGATGTGGTGGAGGAAATGTGCCTGGACTCGTTGATTTTCCGCAAGAG
CTCACAGCTGTGGTGGGAGCTAAATCAAAGACTTCCCCGCTACAAGGAAG
TCGATGCAGAAACAGAAGACAAGGAGAACTTTTCAACAGGCTCAAGCATC
TGCCTTCGAAAGTTCTACGGACTGGCCAACCGGCGGCTGCTCCTTCTGTG
TAAGAGTCTTTGCCTCGTGGATTCCTTTCCCCAAATATGGCACCTGGCCG
AGCACTCTTTCACCTTAGAGAGTAGCCGTCTGCTCCGCAATCGACACCTG
GACCAACTGCTGTTGTGCGCCATACATCTTCATGTTCGGCTCGAGAAGCT
TCACCTCACTTTCAGCATGATTATCCAGCACTATCGCCGACAGCCGCACT
TTCGGAGAAGCGCTTACCGAGAGGTTAGCTTGGGCAATGGTCAGACCGCT
GATATTATCACTTTCTACAACAGTGTGTATGTCCAAAGTATGGGCAACTA
TGGCCGCCACCTGGAGTGTGCGCAAACACGCAAGTCACTGGAAGAATCAC
AGAGTAACGTTGGTATTCTGACGGAAACAACTTCCAACGAATTGAGCATG
AGAGCCAACATCAGCATATCTTCACCGCCCCCTCCCAGGGTATGCCAAAG
TGGCTCCTGCTCCAGTCATCCACCTTCATCTCCCGCCGCATCACCACTTT
CCTTGCAAAGCTCGCCCAACGTAAAGCGTGCTGCTTCGAGTAACGACTTG
ATGAGAGAGATCAAGCGACCAAACATCCTGCGGCGTCGCCAGCTTTCAGT
GATCTAATAACCAATCAAAAAAGGCTTAAATACTTGGCTGCATTTTACGC
AGCTAGCTTAGTATATTTCTTAAACTAAAAAATGGTAATTAAATAATGTT
TAAATTATAGATATTTTATTAACTTGTTCAAGTAAGTTAAAAGCTTTTGC
TTTTGTAAAAATAAAGGAATAACTGCCACTCGTAGTTTAAAAAAAATAAA
AAAAAAAAAAAAA

RE32990.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rbf2-RA 2690 Rbf2-RA 1..2690 1..2690 13435 99.9 Plus
mor.b 3875 mor.b 3791..3875 2695..2611 410 98.8 Minus
mor.a 3900 mor.a 3816..3900 2695..2611 410 98.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11790049..11792755 1..2695 13140 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15965451..15968145 1..2695 13445 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15706282..15708976 1..2695 13445 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 13:31:53 has no hits.

RE32990.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:32:58 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11790049..11792756 1..2697 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:04 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2352 156..2507 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:19 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2352 156..2507 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:08 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2352 156..2507 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:26 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2352 156..2507 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:14:12 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2352 156..2507 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:44:30 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2690 1..2690 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:18 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2688 1..2688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:08 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2688 1..2688 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:26 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 1..2690 1..2690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:12 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 6..2693 1..2688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:58 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15965451..15968146 1..2697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:58 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15965451..15968146 1..2697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:58 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15965451..15968146 1..2697 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:08 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11791173..11793868 1..2697 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:06 Download gff for RE32990.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15706282..15708977 1..2697 99   Plus

RE32990.pep Sequence

Translation from 155 to 2506

> RE32990.pep
METCEVEGEAETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTS
EADAQEWLCCAVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLR
SFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELRCRLGITSTLLRHYKHI
FRSLFVHPGKGADPGAANHYQALYEFGWLLFLVIRNELPGFAITNLINGC
QVLVCTMDLLFVNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVL
EALGELIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEG
MLDINLENLNRKYTNQVADISEMDERVLLSVQGAIETKGDSPKSPQLAFQ
TSSSPSHRKLSTHDLPASLPLSIIKAFPKKEDADKIVNYLDQTLEEMNRT
FTMAVKDFLDAELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMK
QRKLTAALLACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELV
VRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQRLPRYKEVD
AETEDKENFSTGSSICLRKFYGLANRRLLLLCKSLCLVDSFPQIWHLAEH
SFTLESSRLLRNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFR
RSAYREVSLGNGQTADIITFYNSVYVQSMGNYGRHLECAQTRKSLEESQS
NVGILTETTSNELSMRANISISSPPPPRVCQSGSCSSHPPSSPAASPLSL
QSSPNVKRAASSNDLMREIKRPNILRRRQLSVI*

RE32990.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18553-PA 786 GF18553-PA 1..782 1..778 2312 57.5 Plus
Dana\GF22059-PA 854 GF22059-PA 21..706 6..683 728 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16967-PA 780 GG16967-PA 1..780 1..783 3315 84.7 Plus
Dere\GG12742-PA 843 GG12742-PA 36..699 21..676 736 30.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23495-PA 769 GH23495-PA 4..765 11..778 1467 41.7 Plus
Dgri\GH12452-PA 818 GH12452-PA 22..699 6..682 710 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rbf2-PA 783 CG5083-PA 1..783 1..783 4059 100 Plus
Rbf-PA 845 CG7413-PA 26..707 11..682 690 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22956-PA 792 GI22956-PA 10..788 13..778 1738 45.4 Plus
Dmoj\GI14825-PA 802 GI14825-PA 6..682 11..682 739 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22085-PA 781 GL22085-PA 1..778 1..778 1746 46.4 Plus
Dper\GL14434-PA 833 GL14434-PA 31..708 16..683 750 30.4 Plus
Dper\GL22656-PA 387 GL22656-PA 166..375 365..567 470 48.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18648-PA 781 GA18648-PA 1..778 1..778 1741 46.6 Plus
Dpse\GA20332-PA 833 GA20332-PA 31..708 16..683 750 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24273-PA 782 GM24273-PA 1..782 1..783 3539 90 Plus
Dsec\GM19021-PA 799 GM19021-PA 26..677 11..657 660 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19061-PA 779 GD19061-PA 1..779 1..783 3509 89.1 Plus
Dsim\GD16459-PA 845 GD16459-PA 26..707 11..682 706 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23772-PA 792 GJ23772-PA 8..788 12..778 1741 46.7 Plus
Dvir\GJ19490-PA 815 GJ19490-PA 22..721 6..715 778 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14024-PA 807 GK14024-PA 16..802 14..777 1691 44.7 Plus
Dwil\GK19998-PA 833 GK19998-PA 59..731 21..683 678 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24354-PA 783 GE24354-PA 1..783 1..783 3370 85.7 Plus
Dyak\GE16567-PA 635 GE16567-PA 1..491 203..683 554 30.3 Plus
Dyak\GE16566-PA 216 GE16566-PA 31..209 16..193 158 24.3 Plus

RE32990.hyp Sequence

Translation from 155 to 2506

> RE32990.hyp
METCEVEGEAETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTS
EADAQEWLCCAVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLR
SFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELRCRLGITSTLLRHYKHI
FRSLFVHPGKGADPGAANHYQALYEFGWLLFLVIRNELPGFAITNLINGC
QVLVCTMDLLFVNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVL
EALGELIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEG
MLDINLENLNRKYTNQVADISEMDERVLLSVQGAIETKGDSPKSPQLAFQ
TSSSPSHRKLSTHDLPASLPLSIIKAFPKKEDADKIVNYLDQTLEEMNRT
FTMAVKDFLDAELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMK
QRKLTAALLACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELV
VRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQRLPRYKEVD
AETEDKENFSTGSSICLRKFYGLANRRLLLLCKSLCLVDSFPQIWHLAEH
SFTLESSRLLRNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFR
RSAYREVSLGNGQTADIITFYNSVYVQSMGNYGRHLECAQTRKSLEESQS
NVGILTETTSNELSMRANISISSPPPPRVCQSGSCSSHPPSSPAASPLSL
QSSPNVKRAASSNDLMREIKRPNILRRRQLSVI*

RE32990.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rbf2-PA 783 CG5083-PA 1..783 1..783 4059 100 Plus
Rbf-PA 845 CG7413-PA 26..707 11..682 690 28.8 Plus