Clone RE33063 Report

Search the DGRC for RE33063

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:330
Well:63
Vector:pFlc-1
Associated Gene/TranscriptLcp65Ac-RA
Protein status:RE33063.pep: gold
Preliminary Size:490
Sequenced Size:515

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6956 2001-12-14 Blastp of sequenced clone
CG6956 2002-01-01 Sim4 clustering to Release 2
CG6956 2003-01-01 Sim4 clustering to Release 3
Lcp65Ac 2008-04-29 Release 5.5 accounting
Lcp65Ac 2008-08-15 Release 5.9 accounting
Lcp65Ac 2008-12-18 5.12 accounting

Clone Sequence Records

RE33063.complete Sequence

515 bp (515 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071303

> RE33063.complete
ATCTCAAATCAAGTAACGTTGACTAGCCGTTCGGTCGCAAGTTCCCATCG
AATCCTTAGCCAAATTAGCCAAAACAAAAAGAAAAACATGAAGTGCACAG
TTGCCATCGTCTTCACCGCTCTCTTCGCCGTCGTTCTGGCTGCCCCCGCT
CCCGATGCGGATACCCAGATCCTGCGTCTGGAGTCCGACGTCCAGCCGGA
GGGCTACAACTTTGCTTTGGAGACCAGCGACGGCAAGAAGCACGAGGAGC
AGGGTCAGCTCAAGAACGTCGGCACCGAACAGGAGGCCATCGTGGTCCGC
GGATCCTACTCCTTCGTGGCCGATGATGGCCAGACCTACACGGTCAACTA
CATCGCTGACGAGAACGGATTCCAGCCCGAGGGTGCCCATCTGCCCAATG
TGCCCATCGGCAACTAAGCGGATACGGATACGCTAACCGAGAGCTGTTCT
ATGTATAATGGTTTCTAGTTGATTATTAAATAAACGCGGCAAAAAAATCG
AAAAAAAAAAAAAAA

RE33063.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ac-RA 593 Lcp65Ac-RA 85..586 1..502 2495 99.8 Plus
Lcp65Ad-RA 824 Lcp65Ad-RA 384..595 186..397 400 79.2 Plus
Lcp65Ae-RA 622 Lcp65Ae-RA 364..487 273..396 320 83.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6137658..6137942 216..500 1425 100 Plus
chr3L 24539361 chr3L 6137373..6137587 1..215 1060 99.5 Plus
chr3L 24539361 chr3L 6136242..6136421 218..397 330 78.9 Plus
chr3L 24539361 chr3L 6130282..6130405 396..273 320 83.9 Minus
chr3L 24539361 chr3L 6123127..6123222 396..301 300 87.5 Minus
chr3L 24539361 chr3L 6140130..6140279 396..247 300 80 Minus
chr3L 24539361 chr3L 6143001..6143150 396..247 300 80 Minus
chr3L 24539361 chr3L 6125729..6125824 396..301 285 86.5 Minus
chr3L 24539361 chr3L 6127408..6127503 396..301 285 86.5 Minus
chr3L 24539361 chr3L 6128941..6129032 396..305 265 85.9 Minus
chr3L 24539361 chr3L 6131974..6132125 396..245 220 76.3 Minus
chr3L 24539361 chr3L 6144836..6144909 398..325 190 83.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6145109..6145395 216..502 1435 100 Plus
3L 28110227 3L 6144824..6145038 1..215 1060 99.5 Plus
3L 28110227 3L 6143693..6143872 218..397 330 78.9 Plus
3L 28110227 3L 6137731..6137854 396..273 320 83.9 Minus
3L 28110227 3L 6130569..6130664 396..301 300 87.5 Minus
3L 28110227 3L 6147581..6147730 396..247 300 80 Minus
3L 28110227 3L 6150452..6150601 396..247 300 80 Minus
3L 28110227 3L 6133172..6133267 396..301 285 86.5 Minus
3L 28110227 3L 6134853..6134948 396..301 285 86.5 Minus
3L 28110227 3L 6136398..6136538 396..256 285 80.1 Minus
3L 28110227 3L 6139425..6139576 396..245 205 75.7 Minus
3L 28110227 3L 6152285..6152358 398..325 190 83.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6138209..6138495 216..502 1435 100 Plus
3L 28103327 3L 6137924..6138138 1..215 1060 99.5 Plus
3L 28103327 3L 6136793..6136972 218..397 330 78.8 Plus
3L 28103327 3L 6130831..6130954 396..273 320 83.8 Minus
3L 28103327 3L 6123669..6123764 396..301 300 87.5 Minus
3L 28103327 3L 6143552..6143701 396..247 300 80 Minus
3L 28103327 3L 6140681..6140830 396..247 300 80 Minus
3L 28103327 3L 6127953..6128048 396..301 285 86.4 Minus
3L 28103327 3L 6126272..6126367 396..301 285 86.4 Minus
3L 28103327 3L 6129498..6129589 396..305 280 86.9 Minus
3L 28103327 3L 6145385..6145458 398..325 190 83.7 Minus
3L 28103327 3L 6142948..6142989 355..396 150 90.4 Plus
3L 28103327 3L 6140077..6140118 355..396 150 90.4 Plus
Blast to na_te.dros performed on 2019-03-15 22:42:38 has no hits.

RE33063.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:43:16 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6137373..6137587 1..215 99 -> Plus
chr3L 6137658..6137942 216..500 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:06 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..330 88..417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:32 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..330 88..417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:32 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..330 88..417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:04 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..330 88..417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:02 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..330 88..417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:08:57 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..500 1..500 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:32 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..500 1..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:32 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 6..505 1..500 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:04 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 1..500 1..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:02 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ac-RA 6..505 1..500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:16 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6144824..6145038 1..215 99 -> Plus
3L 6145109..6145393 216..500 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:16 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6144824..6145038 1..215 99 -> Plus
3L 6145109..6145393 216..500 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:16 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6144824..6145038 1..215 99 -> Plus
3L 6145109..6145393 216..500 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:32 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6137924..6138138 1..215 99 -> Plus
arm_3L 6138209..6138493 216..500 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:21:02 Download gff for RE33063.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6137924..6138138 1..215 99 -> Plus
3L 6138209..6138493 216..500 100   Plus

RE33063.hyp Sequence

Translation from 0 to 416

> RE33063.hyp
ITNQVTLTSRSVASSHRILSQISQNKKKNMKCTVAIVFTALFAVVLAAPA
PDADTQILRLESDVQPEGYNFALETSDGKKHEEQGQLKNVGTEQEAIVVR
GSYSFVADDGQTYTVNYIADENGFQPEGAHLPNVPIGN*

RE33063.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ac-PA 109 CG6956-PA 1..109 30..138 563 100 Plus
Lcp65Ad-PB 108 CG6955-PB 1..104 30..132 382 69.2 Plus
Lcp65Ad-PA 108 CG6955-PA 1..104 30..132 382 69.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 5..104 36..136 328 65.3 Plus
Lcp65Ag1-PA 105 CG10530-PA 5..104 36..136 325 64.4 Plus

RE33063.pep Sequence

Translation from 87 to 416

> RE33063.pep
MKCTVAIVFTALFAVVLAAPAPDADTQILRLESDVQPEGYNFALETSDGK
KHEEQGQLKNVGTEQEAIVVRGSYSFVADDGQTYTVNYIADENGFQPEGA
HLPNVPIGN*

RE33063.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23521-PA 109 GF23521-PA 1..109 1..109 556 96.3 Plus
Dana\GF23520-PA 108 GF23520-PA 1..105 1..104 361 67.6 Plus
Dana\GF10921-PA 101 GF10921-PA 5..99 7..106 335 65 Plus
Dana\GF10925-PA 107 GF10925-PA 21..101 27..107 322 75.3 Plus
Dana\GF23526-PA 115 GF23526-PA 29..113 22..106 310 64.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15326-PA 109 GG15326-PA 1..109 1..109 559 97.2 Plus
Dere\GG14079-PA 106 GG14079-PA 26..105 28..107 390 90 Plus
Dere\GG15325-PA 108 GG15325-PA 1..105 1..104 385 68.6 Plus
Dere\GG14083-PA 105 GG14083-PA 25..103 28..106 311 73.4 Plus
Dere\GG14086-PA 102 GG14086-PA 18..102 22..106 303 65.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15836-PA 110 GH15836-PA 1..110 1..109 354 62.7 Plus
Dgri\GH15650-PA 101 GH15650-PA 5..99 7..105 352 70.7 Plus
Dgri\GH15835-PA 114 GH15835-PA 9..111 5..104 336 66 Plus
Dgri\GH15837-PA 104 GH15837-PA 1..102 1..103 332 59.2 Plus
Dgri\GH15651-PA 99 GH15651-PA 5..97 7..103 314 60.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ac-PA 109 CG6956-PA 1..109 1..109 563 100 Plus
Lcp65Ad-PB 108 CG6955-PB 1..104 1..103 382 69.2 Plus
Lcp65Ad-PA 108 CG6955-PA 1..104 1..103 382 69.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 5..104 7..107 328 65.3 Plus
Lcp65Ag2-PA 105 CG10534-PA 5..104 7..107 325 64.4 Plus
Lcp65Ag1-PA 105 CG10530-PA 5..104 7..107 325 64.4 Plus
Lcp65Af-PA 100 CG10533-PA 5..99 7..107 311 59.4 Plus
Cpr65Ax2-PB 102 CG18777-PB 4..101 6..107 301 58.8 Plus
Cpr65Ax2-PA 102 CG18777-PA 4..101 6..107 301 58.8 Plus
Cpr65Ax1-PA 102 CG34270-PA 4..101 6..107 301 58.8 Plus
Cpr65Av-PA 111 CG32405-PA 7..110 3..104 289 55.8 Plus
Lcp65Ae-PA 99 CG10529-PA 5..96 7..103 288 59.8 Plus
Lcp65Aa-PA 102 CG7287-PA 3..102 4..105 268 49 Plus
Lcp65Ab1-PA 104 CG32400-PA 5..103 7..107 248 49 Plus
Lcp65Ab2-PA 104 CG18773-PA 5..103 7..107 248 49 Plus
Acp65Aa-PA 105 CG10297-PA 7..104 7..103 247 48 Plus
Cpr65Aw-PA 117 CG32404-PA 5..106 10..105 219 48 Plus
Cpr47Ea-PA 135 CG9079-PA 38..122 23..106 218 49.4 Plus
Cpr65Az-PA 239 CG12330-PA 113..196 25..106 199 50 Plus
Cpr49Aa-PB 144 CG30045-PB 1..112 1..106 198 38.4 Plus
Cpr49Af-PB 126 CG8510-PB 4..101 7..106 197 46.5 Plus
Cpr49Af-PA 126 CG8510-PA 4..101 7..106 197 46.5 Plus
Cpr49Ae-PA 134 CG8505-PA 6..112 5..106 194 42.1 Plus
Cpr65Aw-PB 86 CG32404-PB 15..75 45..105 183 57.4 Plus
Cpr49Ab-PA 259 CG30042-PA 161..238 28..106 182 43 Plus
Cpr11B-PB 195 CG2555-PB 85..150 40..106 173 49.3 Plus
Cpr11B-PA 197 CG2555-PA 85..150 40..106 173 49.3 Plus
Cpr47Eb-PA 214 CG13224-PA 4..111 5..103 173 38 Plus
Cpr47Ef-PD 601 CG13214-PD 126..215 18..106 162 40 Plus
Cpr47Ef-PC 612 CG13214-PC 126..215 18..106 162 40 Plus
Cpr65Au-PB 106 CG18778-PB 9..101 7..98 156 38.3 Plus
Cpr65Au-PA 106 CG18778-PA 9..101 7..98 156 38.3 Plus
Cpr67Fa1-PA 134 CG7941-PA 6..100 7..106 155 35.9 Plus
Cpr67Fa2-PA 134 CG18349-PA 6..100 7..106 154 35.9 Plus
Cpr78E-PA 137 CG7160-PA 14..115 14..107 152 38.2 Plus
Cpr47Ee-PA 369 CG13222-PA 120..188 40..106 151 42 Plus
Pcp-PA 184 CG3440-PA 24..103 22..106 150 36.4 Plus
Cpr67Fb-PA 122 CG18348-PA 9..97 11..106 144 36.1 Plus
Cpr49Ag-PA 134 CG8511-PA 53..133 40..106 143 40.7 Plus
Cpr78Cc-PA 119 CG7658-PA 8..99 8..106 141 35.9 Plus
Cpr65Eb-PA 179 CG8638-PA 7..101 5..103 141 36.9 Plus
Cpr47Ec-PA 131 CG9077-PA 31..103 28..100 140 41.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12618-PA 110 GI12618-PA 1..108 1..107 362 74.1 Plus
Dmoj\GI12627-PA 112 GI12627-PA 5..111 7..107 340 66.4 Plus
Dmoj\GI12628-PA 104 GI12628-PA 5..102 7..103 327 67.3 Plus
Dmoj\GI12620-PA 104 GI12620-PA 1..104 1..105 312 56.2 Plus
Dmoj\GI12617-PA 110 GI12617-PA 10..107 6..104 302 62.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15557-PA 109 GL15557-PA 27..109 27..109 424 95.2 Plus
Dper\GL15556-PA 108 GL15556-PA 1..105 1..104 336 62.9 Plus
Dper\GL15521-PA 102 GL15521-PA 5..99 7..103 329 67 Plus
Dper\GL15558-PA 104 GL15558-PA 20..102 24..106 306 71.1 Plus
Dper\GL15560-PA 102 GL15560-PA 1..102 1..105 301 52.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19982-PA 109 GA19982-PA 27..109 27..109 424 95.2 Plus
Dpse\GA19981-PA 108 GA19981-PA 1..105 1..104 336 62.9 Plus
Dpse\GA15076-PA 104 GA15076-PA 20..102 24..106 306 71.1 Plus
Dpse\GA20238-PA 102 GA20238-PA 1..102 1..105 297 53.3 Plus
Dpse\GA23849-PA 101 GA23849-PA 18..99 22..103 293 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14760-PA 109 GM14760-PA 1..109 1..109 483 94.5 Plus
Dsec\GM19678-PA 109 GM19678-PA 1..109 1..109 483 94.5 Plus
Dsec\GM14759-PA 108 GM14759-PA 1..105 1..104 355 68.6 Plus
Dsec\GM11071-PA 115 GM11071-PA 1..105 1..104 336 66.7 Plus
Dsec\GM13865-PA 101 GM13865-PA 5..101 7..108 286 54.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13939-PA 107 GD13939-PA 1..107 1..109 536 95.4 Plus
Dsim\GD13938-PA 108 GD13938-PA 1..105 1..104 354 67.6 Plus
Dsim\GD14953-PA 101 GD14953-PA 5..101 7..108 288 55.9 Plus
Dsim\GD13943-PA 102 GD13943-PA 1..102 1..105 284 52.8 Plus
Dsim\GD13147-PA 111 GD13147-PA 9..110 5..104 284 56.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12740-PA 110 GJ12740-PA 1..110 1..109 379 72.7 Plus
Dvir\GJ12738-PA 110 GJ12738-PA 1..107 1..104 353 63.9 Plus
Dvir\GJ12680-PA 105 GJ12680-PA 19..104 22..107 334 69.8 Plus
Dvir\GJ12681-PA 105 GJ12681-PA 19..104 22..107 334 69.8 Plus
Dvir\GJ12742-PA 102 GJ12742-PA 1..101 1..104 310 57.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17269-PA 108 GK17269-PA 1..108 1..109 470 82.6 Plus
Dwil\GK17266-PA 115 GK17266-PA 8..112 1..104 380 64.8 Plus
Dwil\GK16921-PA 105 GK16921-PA 5..103 7..106 332 65 Plus
Dwil\GK16918-PA 105 GK16918-PA 5..102 7..103 318 65.3 Plus
Dwil\GK16924-PA 104 GK16924-PA 21..102 25..106 307 69.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21543-PA 108 GE21543-PA 1..105 1..104 342 66.7 Plus
Dyak\GE20507-PA 111 GE20507-PA 7..110 3..104 286 55.8 Plus
Dyak\GE20503-PA 102 GE20503-PA 1..102 1..105 284 54.7 Plus
Dyak\GE21545-PA 104 GE21545-PA 5..103 7..107 260 51 Plus
Dyak\GE21544-PA 118 GE21544-PA 19..118 7..108 258 50.5 Plus