Clone RE33242 Report

Search the DGRC for RE33242

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:332
Well:42
Vector:pFlc-1
Associated Gene/TranscriptCat-RA
Protein status:RE33242.pep: gold
Preliminary Size:1977
Sequenced Size:2009

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6871 2001-12-14 Blastp of sequenced clone
CG6871 2002-01-01 Sim4 clustering to Release 2
CG6871 2003-01-01 Sim4 clustering to Release 3
Cat 2008-04-29 Release 5.5 accounting
Cat 2008-08-15 Release 5.9 accounting
Cat 2008-12-18 5.12 accounting

Clone Sequence Records

RE33242.complete Sequence

2009 bp (2009 high quality bases) assembled on 2001-12-14

GenBank Submission: AY084154

> RE33242.complete
AGGTACGTGGTGCTGGGCTATAAAAACAAATGGAACTGCGCTGCAGTTGC
TTTAGTTGACAGAATTCTCGACGCAGTCACAGCAAAAAACCGAAGGCGGC
TAGAAATCAACAACTTTCCAGTTCGAGTGTTTCTAAATTCTGGTTATCCC
GTTGAGCAAATATCCTAAATTTTAAGCAAAATGGCTGGACGCGATGCGGC
TTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTG
CCATTACCACCGGCAATGGAGCACCCATTGGAATCAAGGATGCCTCCCAG
ACGGTTGGTCCGCGAGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGA
TGAGATGTCGCACTTCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACG
CCAAGGGAGCTGGTGCTTTTGGTTACTTTGAGGTGACCCATGACATCACC
CAGTATTGTGCCGCCAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACT
GGCCGTGCGATTCTCCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCG
CCCGCGATCCTCGAGGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTC
TGGGATTTGGTTGGCAACAACACGCCGGTCTTCTTCATTCGCGACCCGAT
CCTATTCCCCAGCTTCATTCACACCCAGAAGCGCAACCCGCAGACGCATC
TGAAGGATCCGGACATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCC
GCTCACCAGGTGTGCATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTA
CTGCCACATGAACGGCTATGGCTCGCACACCTTCAAATTGATCAACGCCA
AGGGCGAGCCCATCTATGCCAAGTTCCACTTCAAGACGGACCAGGGCATC
AAGAATTTGGACGTGAAGACCGCCGATCAGTTGGCTAGCACTGATCCGGA
TTACAGCATTCGCGATCTGTACAACAGGATCAAGACCTGCAAGTTCCCCA
GTTGGACGATGTACATTCAGGTCATGACCTACGAGCAGGCCAAGAAGTTC
AAGTACAACCCCTTCGATGTCACCAAGGTCTGGTCGCAGAAGGAGTACCC
TCTGATTCCTGTGGGCAAAATGGTGCTGGATCGCAATCCCAAGAACTACT
TTGCTGAGGTGGAGCAGATCGCCTTCAGTCCCGCTCACCTGGTGCCCGGC
GTTGAGCCCTCTCCGGACAAGATGCTGCATGGTCGTCTGTTCTCCTACTC
GGACACCCATCGCCATCGCCTGGGACCGAACTACTTGCAGATCCCGGTGA
ACTGCCCGTACAAGGTGAAGATTGAGAACTTCCAGCGGGATGGAGCCATG
AATGTGACGGACAACCAGGATGGTGCCCCCAACTACTTCCCCAACTCGTT
CAACGGTCCCCAGGAATGCCCCAGGGCCAGGGCCTTGTCCTCCTGCTGTC
CGGTGACTGGAGATGTCTACCGCTACAGCAGCGGCGACACCGAGGACAAC
TTCGGCCAGGTCACCGACTTCTGGGTGCATGTGCTCGACAAGTGCGCCAA
GAAGCGTCTGGTGCAGAACATTGCCGGCCATTTGAGCAACGCCAGCCAGT
TCTTGCAGGAGCGGGCCGTCAAGAACTTCACCCAGGTGCACGCCGATTTC
GGTCGCATGCTGACCGAGGAACTCAACCTGGCCAAGTCCTCGAAGTTCTA
AGCTGAGCGAGCGGATTCGACGGATCAGACTTGGTTTTTGGCCTTAATTA
CGATTAATCCAATGGAACTAATTATTCCAACACCAACACCACCACCACCA
ACACCACCCATTCCGAAATTGACTAAGAAAGGCGAACGCTTTTCGGATCT
TTGGTTGCGGGCTTAAATTGATTTAACCACGAAATGTGTCTTGTCTTGTT
TTGATATTCAAAATTGTTTAAGTCATAAACAAATTACACTTACAATGTAT
ATGTATATGCAATGAATATATAATAAATTCTTTATTTTTTGACAAAAAAA
AAAAAAAAA

RE33242.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-RA 2126 Cat-RA 50..2039 3..1992 9935 99.9 Plus
Cat.a 1829 Cat.a 70..1824 238..1992 8760 99.9 Plus
CG9314-RA 1991 CG9314-RA 929..1359 964..1394 715 77.7 Plus
CG9314-RA 1991 CG9314-RA 620..711 655..746 280 86.9 Plus
CG9314-RA 1991 CG9314-RA 249..411 284..446 275 77.9 Plus
CG9314-RA 1991 CG9314-RA 1409..1489 1444..1524 210 83.9 Plus
CG9314-RA 1991 CG9314-RA 838..878 873..913 175 95.1 Plus
CG9314-RA 1991 CG9314-RA 500..570 535..605 145 80.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18815992..18816915 237..1160 4575 99.7 Plus
chr3L 24539361 chr3L 18817009..18817844 1157..1992 4165 99.9 Plus
chr3L 24539361 chr3L 18812256..18812492 3..239 1185 100 Plus
chr2L 23010047 chr2L 8705506..8706102 1056..1652 735 74.9 Plus
chr2L 23010047 chr2L 8704671..8705300 284..913 555 72.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18826337..18827260 237..1160 4605 99.9 Plus
3L 28110227 3L 18827354..18828189 1157..1992 4180 100 Plus
3L 28110227 3L 18822608..18822844 3..239 1185 100 Plus
2L 23513712 2L 8706633..8707229 1056..1652 750 75 Plus
2L 23513712 2L 8705798..8706427 284..913 555 72.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18819437..18820360 237..1160 4605 99.8 Plus
3L 28103327 3L 18820454..18821289 1157..1992 4180 100 Plus
3L 28103327 3L 18815708..18815944 3..239 1185 100 Plus
2L 23513712 2L 8706633..8706971 1056..1394 600 78.4 Plus
2L 23513712 2L 8706169..8706260 655..746 280 86.9 Plus
2L 23513712 2L 8705798..8705960 284..446 275 77.9 Plus
2L 23513712 2L 8707021..8707101 1444..1524 210 83.9 Plus
2L 23513712 2L 8706387..8706427 873..913 175 95.1 Plus
2L 23513712 2L 8706478..8706536 964..1022 145 83 Plus
2L 23513712 2L 8706049..8706119 535..605 145 80.2 Plus
Blast to na_te.dros performed 2019-03-15 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 1906..2028 1865..1989 115 63.4 Plus

RE33242.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:26:45 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18812254..18812490 1..237 99 -> Plus
chr3L 18815993..18816913 238..1158 99 -> Plus
chr3L 18817011..18817844 1159..1993 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:13 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1521 181..1701 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:06 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1521 181..1701 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:02:01 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1521 181..1701 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:23 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1521 181..1701 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:16 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1521 181..1701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:36:55 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1992 1..1993 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:06 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1992 1..1993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:01 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 3..1993 1..1991 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:24 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1992 1..1993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:16 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 3..1993 1..1991 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:45 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18822606..18822842 1..237 99 -> Plus
3L 18826338..18827258 238..1158 99 -> Plus
3L 18827356..18828189 1159..1993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:45 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18822606..18822842 1..237 99 -> Plus
3L 18826338..18827258 238..1158 99 -> Plus
3L 18827356..18828189 1159..1993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:26:45 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18822606..18822842 1..237 99 -> Plus
3L 18826338..18827258 238..1158 99 -> Plus
3L 18827356..18828189 1159..1993 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:01 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18815706..18815942 1..237 99 -> Plus
arm_3L 18819438..18820358 238..1158 99 -> Plus
arm_3L 18820456..18821289 1159..1993 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:16 Download gff for RE33242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18815706..18815942 1..237 99 -> Plus
3L 18819438..18820358 238..1158 99 -> Plus
3L 18820456..18821289 1159..1993 99   Plus

RE33242.pep Sequence

Translation from 180 to 1700

> RE33242.pep
MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL
QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK
VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV
FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD
RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ
LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV
WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH
GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP
NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH
VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL
AKSSKF*

RE33242.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23641-PA 506 GF23641-PA 1..506 1..506 2601 92.9 Plus
Dana\GF15540-PA 506 GF15540-PA 1..506 1..506 2057 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13679-PA 506 GG13679-PA 1..506 1..506 2706 98 Plus
Dere\GG25301-PA 506 GG25301-PA 1..506 1..506 2035 69.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14374-PA 506 GH14374-PA 1..506 1..506 2477 88.1 Plus
Dgri\GH13231-PA 506 GH13231-PA 1..506 1..506 2015 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-PA 506 CG6871-PA 1..506 1..506 2731 100 Plus
CG9314-PC 506 CG9314-PC 1..506 1..506 2025 70.4 Plus
CG9314-PA 506 CG9314-PA 1..506 1..506 2025 70.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11318-PA 506 GI11318-PA 1..506 1..506 2526 89.9 Plus
Dmoj\GI12408-PA 506 GI12408-PA 1..506 1..506 2046 70.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25560-PA 506 GL25560-PA 1..506 1..506 2016 69 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19920-PA 506 GA19920-PA 1..506 1..506 2601 92.1 Plus
Dpse\GA21693-PA 506 GA21693-PA 1..506 1..506 2016 69 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Cat-PA 506 GM14993-PA 1..506 1..506 2716 98 Plus
Dsec\GM17118-PA 506 GM17118-PA 1..506 1..506 2050 70.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Cat-PA 506 GD14770-PA 1..506 1..506 2718 98.2 Plus
Dsim\GD23560-PA 506 GD23560-PA 1..506 1..506 2050 70.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11574-PA 506 GJ11574-PA 1..506 1..506 2503 89.5 Plus
Dvir\GJ17881-PA 506 GJ17881-PA 1..506 1..506 2054 70.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12121-PA 506 GK12121-PA 1..506 1..506 2599 92.3 Plus
Dwil\GK18754-PA 506 GK18754-PA 1..506 1..506 2018 69.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19975-PA 506 GE19975-PA 1..506 1..506 2694 97.2 Plus
Dyak\GE18791-PA 506 GE18791-PA 1..506 1..506 2062 70.8 Plus

RE33242.hyp Sequence

Translation from 180 to 1700

> RE33242.hyp
MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL
QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK
VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV
FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD
RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ
LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV
WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH
GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP
NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH
VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL
AKSSKF*

RE33242.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-PA 506 CG6871-PA 1..506 1..506 2731 100 Plus
CG9314-PC 506 CG9314-PC 1..506 1..506 2025 70.4 Plus
CG9314-PA 506 CG9314-PA 1..506 1..506 2025 70.4 Plus