BDGP Sequence Production Resources |
Search the DGRC for RE33242
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 332 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cat-RA |
Protein status: | RE33242.pep: gold |
Preliminary Size: | 1977 |
Sequenced Size: | 2009 |
Gene | Date | Evidence |
---|---|---|
CG6871 | 2001-12-14 | Blastp of sequenced clone |
CG6871 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6871 | 2003-01-01 | Sim4 clustering to Release 3 |
Cat | 2008-04-29 | Release 5.5 accounting |
Cat | 2008-08-15 | Release 5.9 accounting |
Cat | 2008-12-18 | 5.12 accounting |
2009 bp (2009 high quality bases) assembled on 2001-12-14
GenBank Submission: AY084154
> RE33242.complete AGGTACGTGGTGCTGGGCTATAAAAACAAATGGAACTGCGCTGCAGTTGC TTTAGTTGACAGAATTCTCGACGCAGTCACAGCAAAAAACCGAAGGCGGC TAGAAATCAACAACTTTCCAGTTCGAGTGTTTCTAAATTCTGGTTATCCC GTTGAGCAAATATCCTAAATTTTAAGCAAAATGGCTGGACGCGATGCGGC TTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTG CCATTACCACCGGCAATGGAGCACCCATTGGAATCAAGGATGCCTCCCAG ACGGTTGGTCCGCGAGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGA TGAGATGTCGCACTTCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACG CCAAGGGAGCTGGTGCTTTTGGTTACTTTGAGGTGACCCATGACATCACC CAGTATTGTGCCGCCAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACT GGCCGTGCGATTCTCCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCG CCCGCGATCCTCGAGGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTC TGGGATTTGGTTGGCAACAACACGCCGGTCTTCTTCATTCGCGACCCGAT CCTATTCCCCAGCTTCATTCACACCCAGAAGCGCAACCCGCAGACGCATC TGAAGGATCCGGACATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCC GCTCACCAGGTGTGCATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTA CTGCCACATGAACGGCTATGGCTCGCACACCTTCAAATTGATCAACGCCA AGGGCGAGCCCATCTATGCCAAGTTCCACTTCAAGACGGACCAGGGCATC AAGAATTTGGACGTGAAGACCGCCGATCAGTTGGCTAGCACTGATCCGGA TTACAGCATTCGCGATCTGTACAACAGGATCAAGACCTGCAAGTTCCCCA GTTGGACGATGTACATTCAGGTCATGACCTACGAGCAGGCCAAGAAGTTC AAGTACAACCCCTTCGATGTCACCAAGGTCTGGTCGCAGAAGGAGTACCC TCTGATTCCTGTGGGCAAAATGGTGCTGGATCGCAATCCCAAGAACTACT TTGCTGAGGTGGAGCAGATCGCCTTCAGTCCCGCTCACCTGGTGCCCGGC GTTGAGCCCTCTCCGGACAAGATGCTGCATGGTCGTCTGTTCTCCTACTC GGACACCCATCGCCATCGCCTGGGACCGAACTACTTGCAGATCCCGGTGA ACTGCCCGTACAAGGTGAAGATTGAGAACTTCCAGCGGGATGGAGCCATG AATGTGACGGACAACCAGGATGGTGCCCCCAACTACTTCCCCAACTCGTT CAACGGTCCCCAGGAATGCCCCAGGGCCAGGGCCTTGTCCTCCTGCTGTC CGGTGACTGGAGATGTCTACCGCTACAGCAGCGGCGACACCGAGGACAAC TTCGGCCAGGTCACCGACTTCTGGGTGCATGTGCTCGACAAGTGCGCCAA GAAGCGTCTGGTGCAGAACATTGCCGGCCATTTGAGCAACGCCAGCCAGT TCTTGCAGGAGCGGGCCGTCAAGAACTTCACCCAGGTGCACGCCGATTTC GGTCGCATGCTGACCGAGGAACTCAACCTGGCCAAGTCCTCGAAGTTCTA AGCTGAGCGAGCGGATTCGACGGATCAGACTTGGTTTTTGGCCTTAATTA CGATTAATCCAATGGAACTAATTATTCCAACACCAACACCACCACCACCA ACACCACCCATTCCGAAATTGACTAAGAAAGGCGAACGCTTTTCGGATCT TTGGTTGCGGGCTTAAATTGATTTAACCACGAAATGTGTCTTGTCTTGTT TTGATATTCAAAATTGTTTAAGTCATAAACAAATTACACTTACAATGTAT ATGTATATGCAATGAATATATAATAAATTCTTTATTTTTTGACAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cat-RA | 2126 | Cat-RA | 50..2039 | 3..1992 | 9935 | 99.9 | Plus |
Cat.a | 1829 | Cat.a | 70..1824 | 238..1992 | 8760 | 99.9 | Plus |
CG9314-RA | 1991 | CG9314-RA | 929..1359 | 964..1394 | 715 | 77.7 | Plus |
CG9314-RA | 1991 | CG9314-RA | 620..711 | 655..746 | 280 | 86.9 | Plus |
CG9314-RA | 1991 | CG9314-RA | 249..411 | 284..446 | 275 | 77.9 | Plus |
CG9314-RA | 1991 | CG9314-RA | 1409..1489 | 1444..1524 | 210 | 83.9 | Plus |
CG9314-RA | 1991 | CG9314-RA | 838..878 | 873..913 | 175 | 95.1 | Plus |
CG9314-RA | 1991 | CG9314-RA | 500..570 | 535..605 | 145 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18815992..18816915 | 237..1160 | 4575 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 18817009..18817844 | 1157..1992 | 4165 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 18812256..18812492 | 3..239 | 1185 | 100 | Plus |
chr2L | 23010047 | chr2L | 8705506..8706102 | 1056..1652 | 735 | 74.9 | Plus |
chr2L | 23010047 | chr2L | 8704671..8705300 | 284..913 | 555 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18826337..18827260 | 237..1160 | 4605 | 99.9 | Plus |
3L | 28110227 | 3L | 18827354..18828189 | 1157..1992 | 4180 | 100 | Plus |
3L | 28110227 | 3L | 18822608..18822844 | 3..239 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 8706633..8707229 | 1056..1652 | 750 | 75 | Plus |
2L | 23513712 | 2L | 8705798..8706427 | 284..913 | 555 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18819437..18820360 | 237..1160 | 4605 | 99.8 | Plus |
3L | 28103327 | 3L | 18820454..18821289 | 1157..1992 | 4180 | 100 | Plus |
3L | 28103327 | 3L | 18815708..18815944 | 3..239 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 8706633..8706971 | 1056..1394 | 600 | 78.4 | Plus |
2L | 23513712 | 2L | 8706169..8706260 | 655..746 | 280 | 86.9 | Plus |
2L | 23513712 | 2L | 8705798..8705960 | 284..446 | 275 | 77.9 | Plus |
2L | 23513712 | 2L | 8707021..8707101 | 1444..1524 | 210 | 83.9 | Plus |
2L | 23513712 | 2L | 8706387..8706427 | 873..913 | 175 | 95.1 | Plus |
2L | 23513712 | 2L | 8706478..8706536 | 964..1022 | 145 | 83 | Plus |
2L | 23513712 | 2L | 8706049..8706119 | 535..605 | 145 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 1906..2028 | 1865..1989 | 115 | 63.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18812254..18812490 | 1..237 | 99 | -> | Plus |
chr3L | 18815993..18816913 | 238..1158 | 99 | -> | Plus |
chr3L | 18817011..18817844 | 1159..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1521 | 181..1701 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1521 | 181..1701 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1521 | 181..1701 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1521 | 181..1701 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1521 | 181..1701 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1992 | 1..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1992 | 1..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 3..1993 | 1..1991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 1..1992 | 1..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cat-RA | 3..1993 | 1..1991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18822606..18822842 | 1..237 | 99 | -> | Plus |
3L | 18826338..18827258 | 238..1158 | 99 | -> | Plus |
3L | 18827356..18828189 | 1159..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18822606..18822842 | 1..237 | 99 | -> | Plus |
3L | 18826338..18827258 | 238..1158 | 99 | -> | Plus |
3L | 18827356..18828189 | 1159..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18822606..18822842 | 1..237 | 99 | -> | Plus |
3L | 18826338..18827258 | 238..1158 | 99 | -> | Plus |
3L | 18827356..18828189 | 1159..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18815706..18815942 | 1..237 | 99 | -> | Plus |
arm_3L | 18819438..18820358 | 238..1158 | 99 | -> | Plus |
arm_3L | 18820456..18821289 | 1159..1993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18815706..18815942 | 1..237 | 99 | -> | Plus |
3L | 18819438..18820358 | 238..1158 | 99 | -> | Plus |
3L | 18820456..18821289 | 1159..1993 | 99 | Plus |
Translation from 180 to 1700
> RE33242.pep MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL AKSSKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23641-PA | 506 | GF23641-PA | 1..506 | 1..506 | 2601 | 92.9 | Plus |
Dana\GF15540-PA | 506 | GF15540-PA | 1..506 | 1..506 | 2057 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13679-PA | 506 | GG13679-PA | 1..506 | 1..506 | 2706 | 98 | Plus |
Dere\GG25301-PA | 506 | GG25301-PA | 1..506 | 1..506 | 2035 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14374-PA | 506 | GH14374-PA | 1..506 | 1..506 | 2477 | 88.1 | Plus |
Dgri\GH13231-PA | 506 | GH13231-PA | 1..506 | 1..506 | 2015 | 69.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cat-PA | 506 | CG6871-PA | 1..506 | 1..506 | 2731 | 100 | Plus |
CG9314-PC | 506 | CG9314-PC | 1..506 | 1..506 | 2025 | 70.4 | Plus |
CG9314-PA | 506 | CG9314-PA | 1..506 | 1..506 | 2025 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11318-PA | 506 | GI11318-PA | 1..506 | 1..506 | 2526 | 89.9 | Plus |
Dmoj\GI12408-PA | 506 | GI12408-PA | 1..506 | 1..506 | 2046 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25560-PA | 506 | GL25560-PA | 1..506 | 1..506 | 2016 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19920-PA | 506 | GA19920-PA | 1..506 | 1..506 | 2601 | 92.1 | Plus |
Dpse\GA21693-PA | 506 | GA21693-PA | 1..506 | 1..506 | 2016 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Cat-PA | 506 | GM14993-PA | 1..506 | 1..506 | 2716 | 98 | Plus |
Dsec\GM17118-PA | 506 | GM17118-PA | 1..506 | 1..506 | 2050 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Cat-PA | 506 | GD14770-PA | 1..506 | 1..506 | 2718 | 98.2 | Plus |
Dsim\GD23560-PA | 506 | GD23560-PA | 1..506 | 1..506 | 2050 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11574-PA | 506 | GJ11574-PA | 1..506 | 1..506 | 2503 | 89.5 | Plus |
Dvir\GJ17881-PA | 506 | GJ17881-PA | 1..506 | 1..506 | 2054 | 70.9 | Plus |
Translation from 180 to 1700
> RE33242.hyp MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL AKSSKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cat-PA | 506 | CG6871-PA | 1..506 | 1..506 | 2731 | 100 | Plus |
CG9314-PC | 506 | CG9314-PC | 1..506 | 1..506 | 2025 | 70.4 | Plus |
CG9314-PA | 506 | CG9314-PA | 1..506 | 1..506 | 2025 | 70.4 | Plus |